Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32300 965 / 0 SD2-5 S-domain-2 5 (.1) AT5G35370 412 / 7e-131 S-locus lectin protein kinase family protein (.1) AT1G34300 369 / 2e-115 lectin protein kinase family protein (.1) AT5G24080 354 / 1e-113 Protein kinase superfamily protein (.1) AT2G19130 340 / 3e-104 S-locus lectin protein kinase family protein (.1) AT4G00340 310 / 6e-93 RLK4 receptor-like protein kinase 4 (.1) AT5G20050 287 / 1e-88 Protein kinase superfamily protein (.1) AT3G17420 257 / 5e-77 GPK1 glyoxysomal protein kinase 1 (.1) AT1G56720 255 / 5e-76 Protein kinase superfamily protein (.1.2.3) AT5G60900 260 / 2e-75 RLK1 receptor-like protein kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G027300 [exp] 1344 / 0 AT4G32300 1012 / 0.0 S-domain-2 5 (.1) Potri.019G013797 [exp] 435 / 8e-140 AT5G35370 751 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.002G086500 [exp] 414 / 7e-132 AT5G35370 952 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.015G026300 [exp] 411 / 1e-130 AT5G24080 684 / 0.0 Protein kinase superfamily protein (.1) Potri.004G061900 [exp] 380 / 3e-118 AT4G32300 402 / 3e-126 S-domain-2 5 (.1) Potri.013G121000 [exp] 368 / 7e-115 AT2G19130 863 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G115700 [exp] 363 / 9e-113 AT1G34300 939 / 0.0 lectin protein kinase family protein (.1) Potri.019G086200 [exp] 358 / 6e-111 AT1G34300 918 / 0.0 lectin protein kinase family protein (.1) Potri.013G149500 [exp] 355 / 4e-110 AT2G19130 838 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002917 [exp] 991 / 0 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10000249 [exp] 985 / 0 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10043391 [exp] 768 / 0 AT4G32300 795 / 0.0 S-domain-2 5 (.1) Lus10028067 [exp] 408 / 9e-130 AT5G35370 844 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039315 [exp] 407 / 3e-129 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1) Lus10006052 [exp] 356 / 6e-110 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1) Lus10033748 [exp] 331 / 3e-101 AT2G19130 711 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10028711 [exp] 320 / 2e-99 AT1G34300 704 / 0.0 lectin protein kinase family protein (.1) Lus10042266 [exp] 317 / 9e-96 AT2G19130 775 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10029802 [exp] 308 / 2e-92 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Potri.006G254600.1 pacid=42768822 polypeptide=Potri.006G254600.1.p locus=Potri.006G254600 ID=Potri.006G254600.1.v4.1 annot-version=v4.1 ATGGACCGATGGTGTTTGATTCGCTTTATGGGGTCCATTTCATTGTTTGTCCTCCTCCTTCCTGAAGGCTGTAAGGCTGGTGTCCAACATGTAGGAACGA TCTATCCAGGGTTTCAAGGGTCTCAAATGACTTGGATCAATCTTAATGGGTTGTTTCTTATATCTAACAACTCGAATTTCGCATTTGGCTTCTCAACTAC TCAAGATGTTACACAATTTCTGTTAGTCGTTGTCCACATGGGTAGCTCGAAGGTCATTTGGTCTGCAAATAGAGGCTCCCCAGTTTCATATTCTGATAAA TTTATCTTCGGTGGAGATGGGAAGGTTTCTTTGCAAAAAGGGGAAGCTGTGGTTTGGACAGCTGATACAGGTGGCAAGAGGGTTTCTGCGATAGAAATGC AGGATTCAGGAAATTTGGTTTTGCTTGGGAATGGTGGTAGTGTACTTTGGCAGAGTTTTAGCCATCCTACCGATACACTTATATCGAACCAGGATTTTGT TGATGGAATGAAACTTGTAAGTGATCCTAACTCCAACAAGCTGACCCATATCCTTGAAATCAAGTCCGGAGACATGATGCTTTCTGCAGGTTTCCAAACT CCCCAGCCTTATTGGTCCATCCAAAAGGAGAGGCGGATGACCATCGATAAAGGTGGTGGGAAACCTGCTGTGGCATCTCTCAGTGGAAATTCATGGAAGT TCTATGATGGAAACAAAGTGTTCCTGTCACAATTTATTTTCTCAGATAGTACTGATGCAAATGGCACTTGGATTGCAGTTCTAGGAAATGATGGTTTTAT ATCTTTCTACAATCTTGATGACGGAGGCAGTGATTCACAAACAAAAATACCAAGTGATCCATGCAGCAGACCAGAACCTTGCGATGCACATTATGTTTGT TCTGGTAACAATGTATGCCAGTGCCCTTCTGGTCTTAGTAATCGCCTGAATTGCCAGACAGAGGTTGTCTCTTCCTGTGATGGTTCAAATGGCTCTACAG AGCTTGTGAGTGCTGGGGATCGGCTCAATTATTTTGCTCTGGGGTTTGTTCCACCCTCTTCAATAACTGATTTGGAAGGTTGCAAATCCGCTTGCCATGG TAATTGCTCATGCCTTGCGTTTTTCTTCCATAACAGTTCTGGAAACTGCTTCCTGTTCAGCGACATAGGAAGTTTCCAGAACTCTAATGCAGGCTCTAGC TTTGTTGCATACATTAAAGTTTCAAGTGATGGAGGCAGTGGTTCCAATGCTGGAGGGGATGGGAGCGGCGAAAAAAGCTTTCCAATTGTTGTGATAATAG TCATTGGAACGTTGATTGTCATCTGTGGTCTACTTTATATGGCATTTCGCTATCACAGGAAAAAGAAGAAGATGCTAGAATCTCCCCCCAACACCTCAGA AGATGATAACTTCCTAGAGACTTTATCTGGGATGCCAATCCGTTTTAGTTACAGAGATCTTCAGACAGCCACTAATAACTTCTCGGTGAAGCTTGGACAA GGAGGGTTTGGCTCAGTCTATCAAGGAGCTCTCCCAGATGGAACCCAACTAGCTGTGAAGAAGTTGGAAGGCATGGGTCAGGGAAAGAAAGAATTTCGAG CTGAAGTTAGCATAATTGGCAGTATCCATCATCACCACTTGGTCAGGATAAAAGGCTTCTGTGCTGAAGGAACTCATCGCCTTCTTGCTTATGAGTTCAT GGCAAATGGCTCTTTGGATAAATGGATCTTCAAGAGAAACAAAGAAGAATTCCTGCTGGATTGGGAAACAAGATTCAATATTGCTGTGGGAACAGCAAAA GGACTAGCTTACCTCCACGAAGACTGTGATGTTAAGATCATTCATTGTGACATAAAACCAGAAAACGTGCTTCTTGATGGTCAATTCCTTGCTAAAGTCT CAGATTTCGGCTTGGCTAAGTTAATGAATCGAGAGCAAAGCCATGTTTTCACAACATTAAGAGGCACCAGAGGGTACCTTGCACCAGAATGGATCACAAA TTATGCCATATCAGAGAAAAGTGATGTTTATAGCTATGGCATGTTGTTGCTTGAGATCATTGGTGGAAGAAAAAACTTTGATCCAACTGAATCTTCGGAG AAGTCCCATTTCCCTTCTTATGCATTCAAGATGATGGAAGAAGGGAAACTGAAGGAAATCCTTGATTCGAAGCTGAGGTTAGACAATGACGACGATAGGG TTTCCACGTCTATTAAAGTTGCATTATGGTGTATACAGGAAGATATGAATCTCAGGCCATCAATGACCAAAGTAGTCCACATGCTTGAAGGTCTCTCCCC AGTTCCACTGCCACCAACTTCATCACCATTGGGTTCCCGCCTTTATTCAAGTTTCTTCAAATCAACAAGTGAGGAGGGCACTTCCTCAGGACCATCGGAC TGCAATAGTGATGCCTACCTCTCTGCAGTGCGACTTTCCGGCCCTAGATAA
AA sequence Show only first row Show all	>Potri.006G254600.1 pacid=42768822 polypeptide=Potri.006G254600.1.p locus=Potri.006G254600 ID=Potri.006G254600.1.v4.1 annot-version=v4.1 MDRWCLIRFMGSISLFVLLLPEGCKAGVQHVGTIYPGFQGSQMTWINLNGLFLISNNSNFAFGFSTTQDVTQFLLVVVHMGSSKVIWSANRGSPVSYSDK FIFGGDGKVSLQKGEAVVWTADTGGKRVSAIEMQDSGNLVLLGNGGSVLWQSFSHPTDTLISNQDFVDGMKLVSDPNSNKLTHILEIKSGDMMLSAGFQT PQPYWSIQKERRMTIDKGGGKPAVASLSGNSWKFYDGNKVFLSQFIFSDSTDANGTWIAVLGNDGFISFYNLDDGGSDSQTKIPSDPCSRPEPCDAHYVC SGNNVCQCPSGLSNRLNCQTEVVSSCDGSNGSTELVSAGDRLNYFALGFVPPSSITDLEGCKSACHGNCSCLAFFFHNSSGNCFLFSDIGSFQNSNAGSS FVAYIKVSSDGGSGSNAGGDGSGEKSFPIVVIIVIGTLIVICGLLYMAFRYHRKKKKMLESPPNTSEDDNFLETLSGMPIRFSYRDLQTATNNFSVKLGQ GGFGSVYQGALPDGTQLAVKKLEGMGQGKKEFRAEVSIIGSIHHHHLVRIKGFCAEGTHRLLAYEFMANGSLDKWIFKRNKEEFLLDWETRFNIAVGTAK GLAYLHEDCDVKIIHCDIKPENVLLDGQFLAKVSDFGLAKLMNREQSHVFTTLRGTRGYLAPEWITNYAISEKSDVYSYGMLLLEIIGGRKNFDPTESSE KSHFPSYAFKMMEEGKLKEILDSKLRLDNDDDRVSTSIKVALWCIQEDMNLRPSMTKVVHMLEGLSPVPLPPTSSPLGSRLYSSFFKSTSEEGTSSGPSD CNSDAYLSAVRLSGPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32300		SD2-5	S-domain-2 5 (.1)		Potri.006G254600 [exp]	0	1
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Potri.002G188100 [exp]	9.16	0.7942
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.001G003000 [exp]	13.82	0.8156
AT1G77210		AtSTP14	sugar transport protein 14, su...		Potri.001G253800 [exp]	14.42	0.7801
AT5G67390			unknown protein		Potri.005G145800 [exp]	15.09	0.8079
AT1G77020			DNAJ heat shock N-terminal dom...		Potri.002G074600 [exp]	23.49	0.7615
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Potri.002G044900 [exp]	31.11	0.7871	Pt-AUX28.3
					Potri.006G088500 [exp]	35.29	0.7581
					Potri.006G088616 [exp]	38.98	0.7504
					Potri.005G190101 [exp]	39.57	0.7839
AT3G48520		CYP94B3	cytochrome P450, family 94, su...		Potri.002G042100 [exp]	43.06	0.7833	Pt-CYP94.3

Compare expression of checked genes

Potri.006G254600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.