Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32290 210 / 1e-65 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G25330 202 / 1e-62 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G52060 154 / 8e-45 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT5G22070 125 / 2e-33 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G31350 96 / 1e-22 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT5G25970 89 / 4e-20 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G25870 87 / 3e-19 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G57270 84 / 2e-18 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2.3) AT1G10280 82 / 2e-17 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G11730 81 / 2e-17 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G017300 [exp] 156 / 7e-45 AT5G22070 418 / 7e-146 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.008G018600 [exp] 147 / 1e-41 AT3G52060 407 / 2e-142 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.001G215400 [exp] 147 / 3e-41 AT5G22070 421 / 1e-146 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G242900 [exp] 145 / 4e-41 AT3G52060 407 / 9e-143 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.006G233400 [exp] 87 / 2e-19 AT5G11730 557 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.018G143900 [exp] 86 / 6e-19 AT2G19160 564 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G195900 [exp] 85 / 1e-18 AT3G21310 504 / 8e-180 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.003G001700 [exp] 84 / 2e-18 AT1G10280 543 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G076600 [exp] 84 / 3e-18 AT2G19160 560 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002919 [exp] 244 / 5e-79 AT5G25330 389 / 4e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10001503 [exp] 243 / 1e-78 AT4G32290 382 / 7e-132 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10004106 [exp] 151 / 9e-43 AT5G22070 486 / 3e-172 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10028866 [exp] 149 / 1e-42 AT3G52060 393 / 1e-136 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10008954 [exp] 146 / 2e-41 AT3G52060 400 / 2e-139 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10026959 [exp] 90 / 4e-20 AT4G31350 490 / 8e-174 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10025464 [exp] 86 / 6e-19 AT2G19160 550 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005108 [exp] 85 / 8e-19 AT1G10880 330 / 4e-109 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10006952 [exp] 85 / 2e-18 AT2G19160 503 / 9e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005504 [exp] 84 / 4e-18 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF02485 [poplar] [flax] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Potri.006G254800.1 pacid=42769504 polypeptide=Potri.006G254800.1.p locus=Potri.006G254800 ID=Potri.006G254800.1.v4.1 annot-version=v4.1 ATGCTTTCTCCAACCCCACTCTCTCTTTTATGTACAATCTTTTTAACAAAAAACCTCCCTAAACTCAAAATCAAAACCCCCATTTCACCACAACCACCAC CTCATCCTCCATCCCTACCACCACCACCTCAAGATGACGACTCACTTCTACATCTTGCTTCCCAAGTCAATCCAAGACCTAAATCACCAAAGAAACTAGC TTTCTTGTTTTTGACGACTACACCTCTTCCCTTTGCACCTCCATGGGAACTCTACTTTAACCAAAGTAGAACGGTTTTCACAGACAAAGTTATCCACTCA AAACTAGCTAAAAGATCAACCCCCACTCTCATATCGGCGGTGCGTCGGTTACTATCCCACGCGCTTCTTCATGACCCTTCCACTTCCATGTTTGCCCTTT TATCCCCTTCTTATGGGCGGCGCGTGGAGTCGATGCTCCCGGAGGTGGGGTTTAAAGATTTTCGTATCGGGTCCCAGTTTAGGGTATTAACACGTAAGCA TGCGAGGATGGTAGTAAGGGACATGAGGATTTGGCCCAAATTTAACCAAACTTGCTTGAGGGAGGACACATGTTATCCTGAAGAGAATTACTTCCCTACC CTTATCCATATGCAGGACCCGCGCGGTGTTAGTGCTGGTGGTCACCCACGTAAGTATAAGGCGTCTGAGGTGGGCCCAGATTTGATAATGAGCTTGAGAA ACAGAAGGCCGAGGTATGGTTACGAGGGAATAAACGGCTCTGATTTGTCAGTGATGAAACGAAATGACCCGTTCTTGTTTGCGAGGAAATTTTCTCCTGA TTCGATCCAGCCATTAATCAGTATAGCGAAGGATATCATCTTGAATGATTAG
AA sequence Show only first row Show all	>Potri.006G254800.1 pacid=42769504 polypeptide=Potri.006G254800.1.p locus=Potri.006G254800 ID=Potri.006G254800.1.v4.1 annot-version=v4.1 MLSPTPLSLLCTIFLTKNLPKLKIKTPISPQPPPHPPSLPPPPQDDDSLLHLASQVNPRPKSPKKLAFLFLTTTPLPFAPPWELYFNQSRTVFTDKVIHS KLAKRSTPTLISAVRRLLSHALLHDPSTSMFALLSPSYGRRVESMLPEVGFKDFRIGSQFRVLTRKHARMVVRDMRIWPKFNQTCLREDTCYPEENYFPT LIHMQDPRGVSAGGHPRKYKASEVGPDLIMSLRNRRPRYGYEGINGSDLSVMKRNDPFLFARKFSPDSIQPLISIAKDIILND

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32290			Core-2/I-branching beta-1,6-N-...		Potri.006G254800 [exp]	0	1
					Potri.019G031732 [exp]	1.73	0.8578
					Potri.006G023450 [exp]	4.00	0.8084
AT1G51450		ASH2R, TRO	ARABIDOPSIS Ash2 RELATIVE, TRA...		Potri.001G256000 [exp]	9.21	0.8007
AT1G49230			RING/U-box superfamily protein...		Potri.019G010500 [exp]	9.53	0.7838
AT5G17440			LUC7 related protein (.1)		Potri.019G055000 [exp]	10.39	0.7647
AT2G37960			unknown protein		Potri.016G109100 [exp]	25.29	0.6390
AT3G20640	bHLH	bHLH123	basic helix-loop-helix (bHLH) ...		Potri.001G410600 [exp]	25.47	0.7656
AT3G29310			calmodulin-binding protein-rel...		Potri.017G091100 [exp]	31.36	0.7366
					Potri.004G212751 [exp]	31.93	0.7753
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Potri.006G066150 [exp]	36.20	0.7394

Compare expression of checked genes

Potri.006G254800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.