Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19720 1209 / 0 DRP5B, ARC5 Dynamin related protein 5B, ACCUMULATION AND REPLICATION OF CHLOROPLAST 5, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT1G53140 225 / 1e-62 DRP5A Dynamin related protein 5A (.1) AT1G14830 76 / 7e-14 DRP1C, ADL5, ADL1C DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) AT5G42080 74 / 2e-13 RSW9, DRP1A, AG68, ADL1A, ADL1 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) AT2G44590 72 / 7e-13 ADL1D DYNAMIN-like 1D (.1.2.3) AT3G61760 71 / 2e-12 ADL1B DYNAMIN-like 1B (.1) AT3G60190 71 / 2e-12 ADL1E, ADL4, ADLP2, EDR3, DRP1E ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) AT4G33650 69 / 1e-11 APEM1, DRP3A, ADL2 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) AT2G14120 61 / 2e-09 DRP3B dynamin related protein (.1.2.3) AT1G10290 56 / 8e-08 DRP2A, ADL6 DYNAMIN-RELATED PROTEIN 2A, dynamin-like protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G118500 [exp] 222 / 2e-61 AT1G53140 1263 / 0.0 Dynamin related protein 5A (.1) Potri.018G027001 [exp] 91 / 1e-20 AT3G19720 87 / 4e-20 Dynamin related protein 5B, ACCUMULATION AND REPLICATION OF CHLOROPLAST 5, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.001G090600 [exp] 77 / 3e-14 AT5G42080 1123 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Potri.003G141000 [exp] 75 / 1e-13 AT5G42080 1115 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Potri.002G171200 [exp] 75 / 1e-13 AT3G61760 1090 / 0.0 DYNAMIN-like 1B (.1) Potri.014G043600 [exp] 71 / 3e-12 AT3G60190 1042 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.010G105900 [exp] 69 / 9e-12 AT1G14830 1100 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Potri.001G147500 [exp] 67 / 4e-11 AT3G60190 976 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.002G135100 [exp] 66 / 8e-11 AT3G60190 1027 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002141 [exp] 215 / 4e-58 AT1G53140 1204 / 0.0 Dynamin related protein 5A (.1) Lus10003873 [exp] 75 / 1e-13 AT5G42080 1137 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10004007 [exp] 74 / 3e-13 AT3G61760 1099 / 0.0 DYNAMIN-like 1B (.1) Lus10023073 [exp] 72 / 1e-12 AT5G42080 1106 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10001820 [exp] 71 / 2e-12 AT5G42080 1123 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10008750 [exp] 66 / 8e-12 AT1G53140 245 / 3e-82 Dynamin related protein 5A (.1) Lus10019170 [exp] 66 / 6e-11 AT1G14830 1131 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Lus10029001 [exp] 66 / 6e-11 AT1G14830 1061 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Lus10030255 [exp] 66 / 7e-11 AT3G61760 1052 / 0.0 DYNAMIN-like 1B (.1) Lus10002407 [exp] 64 / 5e-10 AT4G33650 1079 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00350 [poplar] [flax] Dynamin_N Dynamin family
Representative CDS sequence Show only first row Show all	>Potri.006G254900.2 pacid=42767175 polypeptide=Potri.006G254900.2.p locus=Potri.006G254900 ID=Potri.006G254900.2.v4.1 annot-version=v4.1 ATGCTACAGAACAGTGAAGACACTGTTAACAAAAACCCACAACCCCGACTTCAAGTGGATAAGGAACAGCAAGAGTCGGTGAGCCAGGTAAAATCTTTAG TTTCAGTTCGGAGAAAACTAGAAATGGAGGAGCAATGGAGGCTGTATGAAGCTTATAATGAGCTACATGGGTTAGCACAGGAACTGAAGACTCCATTCGA CGCACCGGCTGTGTTAGTGGTGGGCCACCAAACCGATGGAAAGAGTGCACTGGTGGAAGGTCTAATGGGCTTTCAATTCAACCATGTCGGCGGTGGCACC AAGACTCGTCGCCCCATTACTCTCCATATGAAATATGATCCTGAATGTGAGGTCCCTACTTGCCATCTTGTCTCTGATGATGACCCCTCTTTTGCTCAGG AGAAATCCCTCCATGAAATTCAGGCATACATCGAGTATGAAAACATGAGGTTAGAGAAGGAGTCGTTTCAATTTTCAGCTAAGGAGATAATTATAAGGGT GGAATACAAGCATTGCCCTAATCTTACTATTATAGATACTCCTGGACTTATTGCTCCTGCACCGGGCCGGAAAAATCAAGCATTACAGAGTCAAGCTCAT GCGGTGGAGTCGCTTGTGAGAGCGAAAATGCAGCATAAAGAATTCATTATATTGTGTCTTGAAGATTGTAGTGACTGGAGTAATGCAACTACTCGGAGAG TTGTAATGCAAATTGATCCTGAGCTCTCAAGGACTATTGTTGTCTCAACAAAGCTTGACACTAGAATACCTCAGTTTGCTCGCGCATCTGATGTTGAAGT GTTCCTTTCACCACCAGCGCATACACTTGATGGTTTCATATTAGGTGACTCTCCCTTCTTCACATCAGTTCCTTCTGGAAGAGTTGGTTCTGGCCATGAT TCAGTTTATAGCTCCAATGATGAATTTAAGCAGGCCATATCCTTGAGAGAGGTGGAAGACATTGCATCTTTGGAGGAAAAGCTGTGCCGTCCATTATCAA TGCAAGAAAGAAATAGAATAGGTGTTAGCAAATTAAGGTCCTTTTTGGAAGAATTGCTACAGAAGAGGTATATGGATAGTGTTCCATTGATCATTCCGCT TCTTGAAAAGGAGTATCGCACTGCAACAAGAAAGCTGAATGAAATAAACAAAGAACTCAGCACTTTGGATGAAGTAAAATTGAAGGAGAAAGGGAGAAAA TTTCACGATCTGTTCATAACCAAGCTGTCATTGTTGTTGAAAGGGACAGTTGTTGCTCCTCCAGATAAGTTTGGCGAAACACTGCAAGATGAGAGAAGTA ATGGAGGGGCATTTGTTGGCACCGATGGTCTTCAATTCCCACTCAAGCTAATACCTAATGCAGGGATGCGTCTTTATGGGGGTGCACAATATCATCGTGC AATGGCTGAATTCCGTTTTGTTGTTGGGGGAAACAAATGCCCTCAAATTACACGTGAAGAAATTGTGAATGCATGTGGAGTTGAAGATATCCATGACGGA ACTAACTACTCTAGGACGGCTTGTGTAATAGCTGTAGCCAAGGCTCGTGATACATTTGAACCTTTTCTTCATCAGTTAGGTTGTAGGCTCTTGTATGTCT TAAAGAGATTACTTCCAATCTCGGTCTATCTTCTTCAGAAAGATGGTGAGTATCTAAGTGGTCATGATGTATTCCTCAAGCGTGTTGATTCCGCCTTCAG CAACTTCGCTGAATCTACAGAAAGGGCATGCCGTGAAAAATGCATGGAGGACTTAGAAAGCACCACACGTTATGTAACATGGTCCCTCCACAATAAGAAC CGGGCTGGGTTACGCCAATTCTTAGACTCCTTTGGTGGAACAGAGCAGTCTGCTATGGGAGTTAATCCTATATCTGCTAGTCTGGAGTCATCCATGGTTT CAGTTGCCAATGAGAAGCATGACAATAGACCAAAGGCTGATGTCAAACTCAGTCATTTGGCTTCAGGCACTGACTCATGCTCTGCAGTTCAGACAACAGA AACACGCCTTGCAGATCTTCTAGACAAAACCCTTTGGAATCGGAGACTTGCCCCTTCATCTGAAAGAATTGTTTATGGTCTAGTTCAACAGATATTCCAT GGCATAAGAGAGTATTTCTTAGCCTCTGCTGAGTTGAAGTTCAACTGTTTTCTTTTGATGCCGGTTGTAGACAAGTTGCCAGCACTTCTTCTGCAGGACC TAGAATCAGCATTTGTAGATGATTTAGATAACGTTTTTGACATCACCAACTTGCGACACTCTTTCAGCCAACGGAAGCTAGAAACAGAGATGGACCTTAA AAGGATCAAGAGGCTCAAAGAGAAATTTAGGCTGATAAATGAGCAGCTTACTTTGCATCAACTCAAGGCCGTCTCCATTGAATGA
AA sequence Show only first row Show all	>Potri.006G254900.2 pacid=42767175 polypeptide=Potri.006G254900.2.p locus=Potri.006G254900 ID=Potri.006G254900.2.v4.1 annot-version=v4.1 MLQNSEDTVNKNPQPRLQVDKEQQESVSQVKSLVSVRRKLEMEEQWRLYEAYNELHGLAQELKTPFDAPAVLVVGHQTDGKSALVEGLMGFQFNHVGGGT KTRRPITLHMKYDPECEVPTCHLVSDDDPSFAQEKSLHEIQAYIEYENMRLEKESFQFSAKEIIIRVEYKHCPNLTIIDTPGLIAPAPGRKNQALQSQAH AVESLVRAKMQHKEFIILCLEDCSDWSNATTRRVVMQIDPELSRTIVVSTKLDTRIPQFARASDVEVFLSPPAHTLDGFILGDSPFFTSVPSGRVGSGHD SVYSSNDEFKQAISLREVEDIASLEEKLCRPLSMQERNRIGVSKLRSFLEELLQKRYMDSVPLIIPLLEKEYRTATRKLNEINKELSTLDEVKLKEKGRK FHDLFITKLSLLLKGTVVAPPDKFGETLQDERSNGGAFVGTDGLQFPLKLIPNAGMRLYGGAQYHRAMAEFRFVVGGNKCPQITREEIVNACGVEDIHDG TNYSRTACVIAVAKARDTFEPFLHQLGCRLLYVLKRLLPISVYLLQKDGEYLSGHDVFLKRVDSAFSNFAESTERACREKCMEDLESTTRYVTWSLHNKN RAGLRQFLDSFGGTEQSAMGVNPISASLESSMVSVANEKHDNRPKADVKLSHLASGTDSCSAVQTTETRLADLLDKTLWNRRLAPSSERIVYGLVQQIFH GIREYFLASAELKFNCFLLMPVVDKLPALLLQDLESAFVDDLDNVFDITNLRHSFSQRKLETEMDLKRIKRLKEKFRLINEQLTLHQLKAVSIE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19720		DRP5B, ARC5	Dynamin related protein 5B, AC...		Potri.006G254900 [exp]	0	1
AT1G66520		PDE194	pigment defective 194, formylt...		Potri.017G123300 [exp]	2.82	0.7610
AT5G48960			HAD-superfamily hydrolase, sub...		Potri.010G002900 [exp]	6.32	0.7745
AT1G05070			Protein of unknown function (D...		Potri.005G038000 [exp]	28.49	0.7235
AT1G63855			Putative methyltransferase fam...		Potri.005G109000 [exp]	34.11	0.7599
AT2G29260			NAD(P)-binding Rossmann-fold s...		Potri.001G244900 [exp]	37.41	0.7392
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Potri.017G141000 [exp]	60.12	0.7506
AT5G38360			alpha/beta-Hydrolases superfam...		Potri.004G099300 [exp]	69.24	0.7071
AT4G31780		UGT81A1, EMB279...	UDP-glycosyl transferase 81A1,...		Potri.018G016600 [exp]	77.20	0.7307
AT3G62330			Zinc knuckle (CCHC-type) famil...		Potri.002G192800 [exp]	79.32	0.7459
AT5G01510		RUS5	ROOT UV-B SENSITIVE 5, Protein...		Potri.006G099700 [exp]	85.48	0.7390

Compare expression of checked genes

Potri.006G254900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.