Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56130 516 / 2e-171 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56140 509 / 6e-169 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56120 506 / 2e-167 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56145 491 / 6e-162 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G07650 348 / 2e-107 Leucine-rich repeat transmembrane protein kinase (.1.2) AT3G14840 346 / 9e-107 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53440 344 / 5e-106 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29730 325 / 5e-99 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53420 323 / 1e-98 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 323 / 2e-98 Leucine-rich repeat transmembrane protein kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G026800 [exp] 1094 / 0 AT1G56130 491 / 9e-162 Leucine-rich repeat transmembrane protein kinase (.1) Potri.007G067900 [exp] 552 / 0 AT1G56130 1290 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.003G148000 [exp] 525 / 7e-175 AT1G56145 1063 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.001G082900 [exp] 503 / 3e-166 AT1G56140 1097 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.004G135500 [exp] 388 / 2e-122 AT1G07650 1324 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.011G106400 [exp] 369 / 3e-115 AT1G53440 1268 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.003G025566 [exp] 358 / 2e-114 AT1G53440 754 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385600 [exp] 364 / 2e-113 AT1G53440 1202 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385400 [exp] 364 / 2e-113 AT1G53440 1231 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031199 [exp] 486 / 1e-159 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10010951 [exp] 380 / 2e-120 AT1G07650 979 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10031374 [exp] 367 / 1e-113 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10005550 [exp] 359 / 1e-111 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10038153 [exp] 343 / 3e-105 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10015239 [exp] 330 / 4e-101 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10042505 [exp] 323 / 2e-97 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10041937 [exp] 291 / 1e-86 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10005418 [exp] 187 / 4e-50 AT1G29750 800 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10019036 [exp] 163 / 7e-42 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.006G255100.1 pacid=42768168 polypeptide=Potri.006G255100.1.p locus=Potri.006G255100 ID=Potri.006G255100.1.v4.1 annot-version=v4.1 ATGGGGGTCTTGAGCTTCTTTTTCTTTGTTTTTTTGGTGTCTCAGGTTGGTTTTGGACAGCAAACTACTGATCCTAAAGAAGTGGATGCTCTAAACAAAT TGATAGATTACTGGAATTTGAGAGACAGGTTGAATATTACTGATGACCCCTGCATCCAGAATGCAACATGGGCTAATGAAATAGCAAATCCTAGAGTTGC TTGTGATTGCGGCGGCAACACTTGCCATATCACTCACCTGAAGATTTATGCTTTGGACATTTCTGGTGAGATACCAAGTGAACTGTTTGTCCTTAAGGAT CTGATGGACTTGAATCTTGGTCAAAATGTACTAAATGGTTCCATCCCAGCAGAAATCGAACAGCTGTCGAATATGCAATACCTTAGCCTCGGCATCAACA ACTTCACTGGTCCAGTGCCTCAAGAACTTGGAAATCTAACCAAGTTGATTATCCTAAGTTTTAGCTCGAACAATTTCGTTGGATCACTGCCTACATCCCT TGGAAAGTTGACCTCCTTGCAGGAGCTGTATATTGATAGCAGTGGAGTCAGTGGACCGATCCCGCAAGAATTAGCAAATCTGAAATCTCTTCAAATTCTC TGGGCATCTGATAACCAGTTCACCGGAAAGCTTCCAGACTTCTTTGGAACTCTGACAGAACTCAGGACCCTGCGGCTTCAAGGGACATTGCTTGAAGGTC CAATTCCAAACAGTTTTAGTGCTCTAAACAAGCTGGAAGACCTGAGAATCGGCGATCTTAGCGGTGAAGATTCTTCCCTTGAGTTCTTGCAAAACCAAAA AACTTTGTCTATATTGATCTTGAGAAACTGTCTACTGTCAGGAAAAATTCCAGACCAACTGGGGGAATTTTCTAAGTTGCAAGAACTGGATTTGAGTTTC AACAAATTAACAGGTCAAATTCCAGAATCATTTCAAGATTTAGTTTCGTTACAGTATCTGTATCTTGGAAGCAACAACTTGAATGGACAGCTCCCTGCAA ATATCCTAGGTCCAAATATAATTGCAATAGATGTCTCATTCAATCCCCTTTCTGGAAGTTTGCCACAAAACTTTGCCAAGGCTGGATTATCGATGAATGT TGTCGGAACTTCCATTGATGCAAACAATTTACAGGACAAGAAGGCTTCTGGGATGTTGCAGTGCCTCCAAGCTGATTTCAAGTGCAGCAACAAAGTTCCA TCAAAATCATTTTCTGTCAAATGTGGAGGCACAGGCCAAACGTCTGCATCTGGGGTTGAATATGAAGGTGATTTTGAGTCAATGGGATCTGCTTCACTAT ACACAAGCTCAGAAAATCTATGGGCAGTAAGCAATACTGGAAATTTCATTTCGAACCCAAACGGACCCCAATACATAGCACAGACAGGCTCTCAGATCAC AGGAACTTTGGACTCTGAGCTATATAAGACAGCAAGGATTTCGCCGAGCTCGTTGAGGTACTATGGCCTTGGTCTAAAGAATGGAATATACAGTGTTGAG CTTCACTTTGCAGAGATAGGAATGGTTGACTCTCACTCTTGGAAAGGTCTCGGAAGGCGCATATTCGACGTTTACATTCAGGGAGAGAGAGTTCTCAAGG ACTTCAACATAAAAGAAGCAGCTGGTGGATCCAAGAAAGCCTTGATTAAAACATTGGAAGCAAACGTGACAAACACAATCATGGACATTCACTTCTTTTG GGCTGGTAAAGGCACTTGCTGCATTCCATATCAATCCACATATGGACCTTTAGTATCAGCCATTCATGTTTCTCGAGCATCTGATGCTGCTGGCTCTTCC AAAGGGGACAAGAAACGTATAGGAAAACTCATCGGGATATCAGTGGCATGTGTAGCTGGGCTTGTGATCATCTCTTCTGTATTTTATCTATGGTGGATAA AGGAGGATTCACCTAAGCACAAGAGAATTTACACAGATTCACCCAGGAAATGA
AA sequence Show only first row Show all	>Potri.006G255100.1 pacid=42768168 polypeptide=Potri.006G255100.1.p locus=Potri.006G255100 ID=Potri.006G255100.1.v4.1 annot-version=v4.1 MGVLSFFFFVFLVSQVGFGQQTTDPKEVDALNKLIDYWNLRDRLNITDDPCIQNATWANEIANPRVACDCGGNTCHITHLKIYALDISGEIPSELFVLKD LMDLNLGQNVLNGSIPAEIEQLSNMQYLSLGINNFTGPVPQELGNLTKLIILSFSSNNFVGSLPTSLGKLTSLQELYIDSSGVSGPIPQELANLKSLQIL WASDNQFTGKLPDFFGTLTELRTLRLQGTLLEGPIPNSFSALNKLEDLRIGDLSGEDSSLEFLQNQKTLSILILRNCLLSGKIPDQLGEFSKLQELDLSF NKLTGQIPESFQDLVSLQYLYLGSNNLNGQLPANILGPNIIAIDVSFNPLSGSLPQNFAKAGLSMNVVGTSIDANNLQDKKASGMLQCLQADFKCSNKVP SKSFSVKCGGTGQTSASGVEYEGDFESMGSASLYTSSENLWAVSNTGNFISNPNGPQYIAQTGSQITGTLDSELYKTARISPSSLRYYGLGLKNGIYSVE LHFAEIGMVDSHSWKGLGRRIFDVYIQGERVLKDFNIKEAAGGSKKALIKTLEANVTNTIMDIHFFWAGKGTCCIPYQSTYGPLVSAIHVSRASDAAGSS KGDKKRIGKLIGISVACVAGLVIISSVFYLWWIKEDSPKHKRIYTDSPRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G56130			Leucine-rich repeat transmembr...		Potri.006G255100 [exp]	0	1
AT5G48540			receptor-like protein kinase-r...		Potri.002G249600 [exp]	2.82	0.8311
AT5G53120		SPMS, SPDS3, AT...	spermidine synthase 3 (.1.2.3....		Potri.015G018900 [exp]	4.47	0.8284
AT1G28590			GDSL-like Lipase/Acylhydrolase...		Potri.004G054300 [exp]	5.00	0.8338
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.016G111800 [exp]	6.00	0.8286
AT2G45420	AS2	LBD18, ASL20	LOB domain-containing protein ...		Potri.002G149000 [exp]	6.70	0.8232
AT1G74960		ATKAS2, KAS2, F...	ARABIDOPSIS BETA-KETOACYL-ACP ...		Potri.018G062900 [exp]	6.92	0.7895
AT2G44745	WRKY	WRKY12	WRKY family transcription fact...		Potri.002G138900 [exp]	8.48	0.8135
AT3G53480		PIS1, ABCG37, P...	polar auxin transport inhibito...		Potri.008G099000 [exp]	12.24	0.8232
AT2G40470	AS2	ASL11, LBD15	ASYMMETRIC LEAVES2-LIKE 11, LO...		Potri.013G081200 [exp]	15.49	0.8172
AT4G25970		PSD3, PSD2	phosphatidylserine decarboxyla...		Potri.001G172400 [exp]	16.73	0.7434

Compare expression of checked genes

Potri.006G255100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.