Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25340 164 / 9e-50 Ubiquitin-like superfamily protein (.1) AT4G32270 157 / 7e-47 Ubiquitin-like superfamily protein (.1.2) AT1G80060 123 / 1e-33 Ubiquitin-like superfamily protein (.1) AT3G07860 71 / 1e-14 Ubiquitin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G015002 [exp] 73 / 2e-15 AT3G07860 178 / 1e-57 Ubiquitin-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006187 [exp] 208 / 4e-66 AT4G32270 141 / 5e-41 Ubiquitin-like superfamily protein (.1.2) Lus10041040 [exp] 204 / 1e-64 AT5G25340 139 / 2e-40 Ubiquitin-like superfamily protein (.1) Lus10012567 [exp] 82 / 8e-19 AT3G07860 205 / 3e-68 Ubiquitin-like superfamily protein (.1) Lus10041524 [exp] 61 / 1e-10 AT3G07860 184 / 3e-59 Ubiquitin-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G255500.1 pacid=42768903 polypeptide=Potri.006G255500.1.p locus=Potri.006G255500 ID=Potri.006G255500.1.v4.1 annot-version=v4.1 ATGGAGGAGGAAGAGGAGAAGGAGGAGGAGAGCTCTCTGATTCAGCTGGCTGATTTCAGAATCGACGGTTCTTATTCACCTCCAACTTCTTCTTCTTCTT CTTCTTCTGGTCGACACCTTCACGGCCGGTCTACTTCATTACCGTCCTTAATGACTCTCGATGGCCGACGTTCAAGTTTCGGGAACGTCACCAAGGCTCT TTTTTATTCTTATAATAAACTTCCTGAAGAACCTCTCAGACTCTCTGTTCTCAAATTAGACGCCTCCTCCTTCGAGATTGAAGTAATGAAGTCAGCTACA GTTGAAGAACTAAGGCAAGCGGTTGAGGCTGCGTTTAGTTACATGCCGCAGGAAGGGCCGGGAAAGATCTCATGGCCACATTTGTGGGGGCATTTTTGCT TGTGTTATGGTGATCAGAAGTTGCTTATGGAGACAGATTATATTAAGAACTATGGCATCAAGGATGGTGATCAGCTTCAATTTATCCGGCATGTCTCAGG CAACTACAGTTTGAAAAAGAAGCGTTCATTGAAAAAGATTGCTGGGTCAGAATCACCAAAAATCTCACTGTCACCATCAAATCGCTCTGAAGAGAAAGAA CAGAATTACGAAGACAAAGGTTATGATGACTTAGAGAATGGGGAGTGCCAGCATTTTCAAGATAAAAATGACGGCATTATTACACAAGACGAGGCCAGAT GGAGTTGTTTCTTCAGACGGTGGTTCATGTACTCCAGGCTGTCAACCATGGATAGGACAATTGGCTGGAAGACTTCTCCATCTAGATCTGCCTGTGGTTT CTTGGGCAGTTTTAGAAGGATACTGCAGTTTTACGGTAACAATAGTTATTCCCGAAAAGGTACACTTAGAGAGGATTAG
AA sequence Show only first row Show all	>Potri.006G255500.1 pacid=42768903 polypeptide=Potri.006G255500.1.p locus=Potri.006G255500 ID=Potri.006G255500.1.v4.1 annot-version=v4.1 MEEEEEKEEESSLIQLADFRIDGSYSPPTSSSSSSSGRHLHGRSTSLPSLMTLDGRRSSFGNVTKALFYSYNKLPEEPLRLSVLKLDASSFEIEVMKSAT VEELRQAVEAAFSYMPQEGPGKISWPHLWGHFCLCYGDQKLLMETDYIKNYGIKDGDQLQFIRHVSGNYSLKKKRSLKKIAGSESPKISLSPSNRSEEKE QNYEDKGYDDLENGECQHFQDKNDGIITQDEARWSCFFRRWFMYSRLSTMDRTIGWKTSPSRSACGFLGSFRRILQFYGNNSYSRKGTLRED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25340			Ubiquitin-like superfamily pro...		Potri.006G255500 [exp]	0	1
AT3G15800			Glycosyl hydrolase superfamily...		Potri.001G192200 [exp]	12.40	0.8704
					Potri.008G018000 [exp]	18.97	0.8602
AT5G20870			O-Glycosyl hydrolases family 1...		Potri.006G216700 [exp]	23.55	0.8525
AT1G47271			Cystathionine beta-synthase (C...		Potri.005G228300 [exp]	27.12	0.8524
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Potri.003G024900 [exp]	29.22	0.8425
AT3G15800			Glycosyl hydrolase superfamily...		Potri.003G032600 [exp]	31.62	0.8521
AT3G50160			Plant protein of unknown funct...		Potri.015G019000 [exp]	35.66	0.8475
AT3G17380			TRAF-like family protein (.1)		Potri.008G005300 [exp]	35.91	0.8493
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.001G340500 [exp]	37.69	0.8491
AT5G41470			Nuclear transport factor 2 (NT...		Potri.001G100500 [exp]	48.27	0.8466

Compare expression of checked genes

Potri.006G255500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.