Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32260 214 / 3e-70 PDE334 PIGMENT DEFECTIVE 334, ATPase, F0 complex, subunit B/B', bacterial/chloroplast (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G026500 [exp] 288 / 2e-99 AT4G32260 218 / 9e-72 PIGMENT DEFECTIVE 334, ATPase, F0 complex, subunit B/B', bacterial/chloroplast (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041039 [exp] 207 / 2e-67 AT4G32260 220 / 8e-73 PIGMENT DEFECTIVE 334, ATPase, F0 complex, subunit B/B', bacterial/chloroplast (.1) Lus10006188 [exp] 206 / 4e-67 AT4G32260 222 / 2e-73 PIGMENT DEFECTIVE 334, ATPase, F0 complex, subunit B/B', bacterial/chloroplast (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0255 [poplar] [flax] ATP_synthase PF00430 [poplar] [flax] ATP-synt_B ATP synthase B/B' CF(0)
Representative CDS sequence Show only first row Show all	>Potri.006G255600.1 pacid=42767776 polypeptide=Potri.006G255600.1.p locus=Potri.006G255600 ID=Potri.006G255600.1.v4.1 annot-version=v4.1 ATGGCCAACATGATCATGGCCTCTTCCAAACCTCTCATCACCCTCTCCTCCTCTTCCCTCCCCACCAACAACAAACCCAAACTCCAAATCCCACAACTTT CCTTCCCTAAAATCCTCAAGATCACCAAACCCCAACTCCTATCTCTCTCCACCTCCACCCTCAAATCCCTCTCTCTCATTGCTGCCACTTCCTTAACCTT CGCACCACCTTCTTTGGCTGAAGAAATAGAAAAGGCTGCACTCTTTGACTTCAACTTAACACTTCCTATAATCATGGTTGAGTTCTTGGTCCTCATGGTT GCTTTGGACAAAATCTGGTTCACCCCACTTGGTAATTTCATGGATGAGAGAGATTCGGCCATAAAAGAGAAGCTGAGCAGTGTTAAAGATACATCTGAAG AAGTTAAGCAACTTGAAGAACAGGCTGCTGCTGTTATGAGAGCAGCTAGGGCTGAGATATCGGCTGCATTGAATAAAATGAAGAAGGAAACACAGGGTGA AGTGGAGCAGAAGTTGGCTGAAGGAAGGAAGAAAATTGAGGCTGACTTGCAAGAAGCACTGGCTAAATTGGAGACTCAGAAAGAGGAGACTATGAAAGCA CTTGATTCACAAATTGCTGCTCTCAGTGATGGGATTGTTAAGAAGGTGCTTCCTGTTCAATGA
AA sequence Show only first row Show all	>Potri.006G255600.1 pacid=42767776 polypeptide=Potri.006G255600.1.p locus=Potri.006G255600 ID=Potri.006G255600.1.v4.1 annot-version=v4.1 MANMIMASSKPLITLSSSSLPTNNKPKLQIPQLSFPKILKITKPQLLSLSTSTLKSLSLIAATSLTFAPPSLAEEIEKAALFDFNLTLPIIMVEFLVLMV ALDKIWFTPLGNFMDERDSAIKEKLSSVKDTSEEVKQLEEQAAAVMRAARAEISAALNKMKKETQGEVEQKLAEGRKKIEADLQEALAKLETQKEETMKA LDSQIAALSDGIVKKVLPVQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Potri.006G255600 [exp]	0	1
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Potri.018G026500 [exp]	1.41	0.9895
AT5G07580	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G079600 [exp]	1.41	0.9839
AT5G64480			unknown protein		Potri.001G286200 [exp]	3.46	0.9813
AT3G02730		TRXF1, ATF1	thioredoxin F-type 1 (.1)		Potri.019G054800 [exp]	4.47	0.9784	PtrcTrxf
AT1G31350		KUF1	KAR-UP F-box 1 (.1)		Potri.001G230600 [exp]	5.91	0.9492
AT5G43750		PnsB5, NDH18	Photosynthetic NDH subcomplex...		Potri.010G078800 [exp]	6.00	0.9795
AT5G49920			Octicosapeptide/Phox/Bem1p fam...		Potri.004G224500 [exp]	7.34	0.9596
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Potri.003G132400 [exp]	7.48	0.9714
AT5G66190		ATLFNR1	ferredoxin-NADP\(+\)-oxidoredu...		Potri.007G057200 [exp]	8.77	0.9748
AT2G33450			Ribosomal L28 family (.1)		Potri.010G068500 [exp]	9.16	0.9766

Compare expression of checked genes

Potri.006G255600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.