Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32250 830 / 0 Protein kinase superfamily protein (.1.2.3) AT5G13530 135 / 1e-32 KEG KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) AT4G38470 91 / 6e-19 STY46 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) AT2G17700 90 / 8e-19 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT4G35780 82 / 4e-16 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) AT5G01850 81 / 4e-16 Protein kinase superfamily protein (.1) AT5G66850 82 / 7e-16 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1) AT4G26890 79 / 3e-15 MAPKKK16 mitogen-activated protein kinase kinase kinase 16 (.1) AT3G22750 77 / 8e-15 Protein kinase superfamily protein (.1) AT3G13530 78 / 9e-15 MAPKKK7, MAP3KE1 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G026400 [exp] 1157 / 0 AT4G32250 809 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.001G274900 [exp] 137 / 2e-33 AT5G13530 1856 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Potri.001G029600 [exp] 136 / 4e-33 AT5G13530 2587 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Potri.004G179100 [exp] 103 / 2e-23 AT4G35780 612 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179457 [exp] 98 / 1e-21 AT4G38470 654 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.009G139400 [exp] 98 / 3e-21 AT4G38470 807 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179514 [exp] 97 / 8e-21 AT4G38470 786 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.007G060600 [exp] 91 / 6e-19 AT4G35780 793 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.009G131100 [exp] 87 / 1e-18 AT3G50310 200 / 4e-62 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002923 [exp] 840 / 0 AT4G32250 716 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001499 [exp] 830 / 0 AT4G32250 708 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10009358 [exp] 744 / 0 AT4G32250 677 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10019343 [exp] 689 / 0 AT4G32250 627 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10039491 [exp] 137 / 3e-33 AT5G13530 2343 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10002368 [exp] 90 / 4e-19 AT5G50000 659 / 0.0 Protein kinase superfamily protein (.1) Lus10042129 [exp] 90 / 4e-19 AT5G50000 657 / 0.0 Protein kinase superfamily protein (.1) Lus10012668 [exp] 83 / 8e-17 AT3G50310 347 / 5e-119 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10039357 [exp] 83 / 9e-17 AT3G22750 611 / 0.0 Protein kinase superfamily protein (.1) Lus10025442 [exp] 82 / 5e-16 AT5G58950 510 / 2e-178 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.006G255700.5 pacid=42769303 polypeptide=Potri.006G255700.5.p locus=Potri.006G255700 ID=Potri.006G255700.5.v4.1 annot-version=v4.1 ATGGCCAGCAAAGTTGTTCCTGCTCAACCCGTGACTCCTTTCGAGTTTGAGCTTTATGAAGATCCTGATCACCTTAGAACTGTGGTGGCCTCGTCAAGCC AGCCAACTCCTAGGATTGATCCTGCGAAATTGAAACTTAGACATAGAATTGGGAGGGGACCTTTTGGTGATGTTTGGTTGGCTACTCATCATCAATCAAC TGAAGATTATGATGAGTGTCATGAAGTGGCTGTCAAGATGTTGCATCCCATTAAGGAGGAACATATGAGGGTTGTGCTGGATAAGTTTGATAATTTGTTT TCAAAGTGTCAGGGCATAGAAAATGTGTGTTTTCTACATGGGATTTCAGTTATAAATGGAAAGATATGCATCGTGATGAAGTTTTATGAGGGATCCGTTG GGGACAAAATGGCTCGCCTTAAAGGAGGGAAGCTCTCATTACCTGATGTTTTGAGGTATGGGATAGTGTTGGCTCAGGGAATTGCACAGTTGCATGCTAA AGAAATCCTAGTTTTTAACCTTAAACCTTGTAGCTTCCTTCTTAATGAGAATGATCAAGCAGTTCTGGGCGATGTTGGTATTCCTTTCCTGCTATTTGGA ATTCCATTGCCAAGTGCAGATATGTCTCGGAGGCTTGGAACCCCAAACTACATGGCTCCAGAACAATGGCAGCCAGAAATAAGAGGTCCAGTATCCTTTG AGACAGATTCATGGGGATTTGGGTGCAGCGTTGTGGAGATGTTGACTGGTGTTCAGCCTTGGCGTGGGAAGTCAGTTGAAGAAATTTACGAGTCAGTGGT TAGGAAACAAGAGAAACCACGTATCCCTGAGGGCCTCCCTCCTCCAGTTGAAAATGTTCTTCTTGGCTGCTTTGAATATGACTTGAGGAGTCGGCCCTTG ATGACAGACATAGTGCGTGTATTTAAAAGCTCGCAGAACGCAGTTTTTGTAGATGGAGGCTGGACAGGGTTTGGCAGCAGAACTACACTGGAGAAATTTA GTGGCACTGGTTACACAGAGTGGTTTCTGTCAAAGGATCATCTGCAAGTGGGAGACATGGTGCGTTCCAGGAGGCCACCTAACTCTTGCAAACCTGAAAA TATGGATGTCCCGGAAGGAACCGTAGTGGGTTTAGAACGTGACCCAGATCGAGATGGTTTTGTTTTGGTGAGAGTTCACGGCATCCATGACCCATTAAGA CTTCCTGTCTCAACCTTGGAACGAGTCACTTTTGGTCTTGCAGCTGGGGATTGGGTACATCTGAAGGAGGAAGACAGAAGGCACTCACCAGTGGGCATTC TTCATTCCATAAAACGTGATGGAAGTGTGGCTGTTGGATTTATAGGTGTGGAAACTCTCTGGAAAGGAAATTCTTCAGAGCTGCAAATGGCTGAACCTTA CTTTGTCGGTCAGTTTGTGAGGCCGAGAGCTAATGTTCTTAGCCCCCGATTTGAATGGCCTCGTAAAACAGGAGGGGCCTGGGCTACTGGGAGGATTTGG TGGATCCTGCCCAATGGGTGCCTCATTGTAAAGTTTCCTGGAAGATTGACAATCGGACAAGAAAATAGCAGTTTCTTGGCTGATCCAGCTGAAGTGGAAG TAGTTTCTTTTAATTCCTGTCCTGGGGTCGTCAAAAAATATCAACACTTTGAGGATTTTCATTGGGCTGTGAGACCTCTTGTGATAGCATTGGGTATATT TACAGCCATGAAGGTTGGATTTTTTGTCGGGAAGAAAATAGGGAGATCAAACAAGCGACAGGGTAGTGCAGTGCAAAGTAATGCCCAACATGTGGATGAC CAGACTAGCGGCAATGGTAGCAACCAATGGTTTCCGCCATCCGTGAAAAATATCCTTGGTGTTAGCCCTGCTGCACGGTAG
AA sequence Show only first row Show all	>Potri.006G255700.5 pacid=42769303 polypeptide=Potri.006G255700.5.p locus=Potri.006G255700 ID=Potri.006G255700.5.v4.1 annot-version=v4.1 MASKVVPAQPVTPFEFELYEDPDHLRTVVASSSQPTPRIDPAKLKLRHRIGRGPFGDVWLATHHQSTEDYDECHEVAVKMLHPIKEEHMRVVLDKFDNLF SKCQGIENVCFLHGISVINGKICIVMKFYEGSVGDKMARLKGGKLSLPDVLRYGIVLAQGIAQLHAKEILVFNLKPCSFLLNENDQAVLGDVGIPFLLFG IPLPSADMSRRLGTPNYMAPEQWQPEIRGPVSFETDSWGFGCSVVEMLTGVQPWRGKSVEEIYESVVRKQEKPRIPEGLPPPVENVLLGCFEYDLRSRPL MTDIVRVFKSSQNAVFVDGGWTGFGSRTTLEKFSGTGYTEWFLSKDHLQVGDMVRSRRPPNSCKPENMDVPEGTVVGLERDPDRDGFVLVRVHGIHDPLR LPVSTLERVTFGLAAGDWVHLKEEDRRHSPVGILHSIKRDGSVAVGFIGVETLWKGNSSELQMAEPYFVGQFVRPRANVLSPRFEWPRKTGGAWATGRIW WILPNGCLIVKFPGRLTIGQENSSFLADPAEVEVVSFNSCPGVVKKYQHFEDFHWAVRPLVIALGIFTAMKVGFFVGKKIGRSNKRQGSAVQSNAQHVDD QTSGNGSNQWFPPSVKNILGVSPAAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32250			Protein kinase superfamily pro...		Potri.006G255700 [exp]	0	1
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Potri.001G112600 [exp]	1.73	0.9702
AT2G45900			Phosphatidylinositol N-acetygl...		Potri.001G103400 [exp]	3.46	0.9579
AT4G39660		AGT2	alanine:glyoxylate aminotransf...		Potri.007G085600 [exp]	3.74	0.9428	Pt-AGT2.1
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Potri.015G110000 [exp]	4.47	0.9630	Pt-ERD1.3
AT1G61720		BAN	BANYULS, NAD(P)-binding Rossma...		Potri.011G031700 [exp]	4.89	0.9473	ANR/BAN2,Pt-BAN.1
AT1G56010	NAC	NAC1, ANAC021, ...	Arabidopsis NAC domain contain...		Potri.007G065400 [exp]	5.74	0.9625	Pt-NAC1.1
					Potri.004G187300 [exp]	8.77	0.9488
AT5G65110		ATACX2, ACX2	acyl-CoA oxidase 2 (.1.2)		Potri.007G090400 [exp]	9.05	0.9289
AT4G34120		CBSX2, CDCP1, L...	LOSS OF THE TIMING OF ET AND J...		Potri.001G303900 [exp]	14.07	0.9450
AT5G53730			Late embryogenesis abundant (L...		Potri.012G006000 [exp]	14.38	0.9377

Compare expression of checked genes

Potri.006G255700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.