Plant FIBer expression Database

Potri.006G255800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G32190 545 / 0 Myosin heavy chain-related protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G026300
[exp]
151 / 2e-40 AT4G32190 99 / 1e-22 Myosin heavy chain-related protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006190
[exp]
429 / 2e-140 AT4G32190 387 / 1e-124 Myosin heavy chain-related protein (.1)
Lus10041037
[exp]
398 / 3e-129 AT4G32190 380 / 1e-122 Myosin heavy chain-related protein (.1)
Lus10001498
[exp]
72 / 8e-15 AT4G32190 72 / 1e-15 Myosin heavy chain-related protein (.1)
PFAM info
Representative CDS sequence
>Potri.006G255800.3 pacid=42766893 polypeptide=Potri.006G255800.3.p locus=Potri.006G255800 ID=Potri.006G255800.3.v4.1 annot-version=v4.1
ATGGGGTTTTCAGTTGCCCTTCGCTGTTATCTACCAGTCGAATCTTCTCTCCATTCCTCCAAGTTTTCACCGAGGTTCAACTTGAAGCAGAACAGACTGG
CTTTCATAACAACATCAAAAATAGAAAGCCCTTCACTGCAGATTGTCAAATCAATCTCAAACAACATGAATTCGAGCATCAATGAAAATGGGGCTACTGA
ACCTGCAAGGGTTCTTCTTGAGAGATTGTTTGCACAGACTCTGAAACTCGAAGAACAGATGAGTAGGAGCTCTCGCCTTCCCGAGGATGTTCAACCAGTG
GTTAATCTTGAAATTCTGGAATCTGATCTTCTTGCTCTTTTGAAAGCCTTGAAGAAGAAGGAAGAAGAACTTCAAGATGCTGAAAGAAATGTTTTCTTGG
AACACAGCAGATTAAATCAGGCAAAGGAGGAGTTGAAAAAACGGGAAAATGTAATTACAGCTGCTTTTTCTAAGCATGAAAAACTCGAAGGGGAGCTAAA
GCAAGCAAATCTTAATCTAGCTTCTCAAGCCAGGGAGATTGAAGAATTAAAGCTTCAACTCAAGGAGAAAGAACAGGATATTGCTTCTGCATGTTCTGCA
CTTTCTCTCAAAGAAGATGAAATGGATAAAATGAAAACTGATTTGCTGAAGAAAAGTGAGGAAGTTGCTAGGATTGACTCTGAACTGAAATACAAGGCTC
AACTGCTGAACCAAGCCAGTGAGGTTGTGAAGCGACAAGAAATCGAACTTCAAGGACTGCAAATGCTTATTCGAGAGAAAGAAGAAGAACTGGAAGTTTC
TACAAATCTGAGGAAATTTGAGGAAGAAAAGTTAAAAGTTGTGGAGTCCAATTTGGAGGATCGGACAAGGGAATGGTTACTAATCCAGGAAGGACTGAAC
AAATTGGCAAAGGAAGCATCTAAACAAGTCAGAGACACTAATGAGGCTTTAGAGGATTTTGGAAGGGTGTATAAGCTTCTTGAAGACGTGAGATCTGAAC
TGATTTCTTCACAAAAATCTCTAGCATTCTCTAGAAAGCAAATGGAAGAACAAGAGCAGCTATTAAAAACGCAACTAGCAGAGCTTGAAGAACAGAGGAA
AAGTGTTATGTCTTACCTGAATAGTTTGAAAAATGCCAAAATAGAAGTGGAGAGTGAGAGAGTAAAGCTTAGGACTGCAGAGGCTCGAAATAAGGAGCTT
GAACGAGACTTGTCCATGGAGAAGGAGCTGGTGGAAGAATTACAGAAGGAGTTAGAGAAGGAGAAATCTTCTCTGCAGCAGGAAATTGAGAAGACGTCTT
TTCTACAACAGGAACTGCTTCAGAAAAATATTGAATTTGGAGAAATGCAGCATCTTCTTCAAGCTAAAGAATCAGATTTGGTGGAAGCTAAACTAGATAT
CCAGAATTTAAAATCTGAGCAGGCTTCTCTTCAGCTTATACTGGAGGATAAAGATTTGCAACTCTTTGACGCGAGGAAGAATTTGGATGAAGTAAATCAG
GAGGTCGCAGAGCTAAGGATGCTAATGAGCAGTAAAGAAGAACAACTTGTCCAAGCCACCACCATGATAAAGGAGAAAGAGGAGCATGTTCAGGTTATGC
AAGATGAATTGAACAATACAAGGGTGAAAGTCTCTGAAGCGGAATCTGTAGTGGAAAGGATCGTAGAGCTTACAAATGAATTGGTTATCTCCATTAAAGA
TCAGAATGAACTAAGGCAATCCAACAATATGACCTTGGAATTCTTTCAACAACCATTGGATGAACTAAGTGATGATTTTAGGTTGCAGAAGAAGCAGTAT
GAAACAGAACTCAAGTTTAGCAGAGAAAGCTTAAGAGTGAAAGAAATGGAAGTTCTAGCAGCAAAGAGAGCTCTCGCAATCAAAGATGAAGAGCTTAAAA
CAGTTCTCGAGAGATTGGATACAAAAGAGAAAGAACTGAGAAAATTGAAGGAAGAGGCAGTTGAAGATGCTAATGATCTGAGGAAGCTTTATTCTTTAGC
GCAAGAGAGAATCGGTGAGAGTAGTGTTGGAGACTTGGCTATTGAGAAACTCAAACTAGAGGCCGCTCAACTTGAAGTTGAAGCTGCCACCAGCGCTCTG
CAAAAACTTGCAGAAATGAGTCGAGAACTTTTAAATAAAGCAAGCTTGAGCATTGAGGCTGATGCTGATATTTTCATGCCAAACGGCTCTGGTCCTGGCC
TTGTTCTGTTAGAGAACAATGAATGTTTCAAGGAGGTTAAAACAGAAGTTGCTCGGCTGTCATCTTTGACTGAACAGCTTTTGCAAGATGCTGGTATTAC
TGTTGGTGCAGACTGA
AA sequence
>Potri.006G255800.3 pacid=42766893 polypeptide=Potri.006G255800.3.p locus=Potri.006G255800 ID=Potri.006G255800.3.v4.1 annot-version=v4.1
MGFSVALRCYLPVESSLHSSKFSPRFNLKQNRLAFITTSKIESPSLQIVKSISNNMNSSINENGATEPARVLLERLFAQTLKLEEQMSRSSRLPEDVQPV
VNLEILESDLLALLKALKKKEEELQDAERNVFLEHSRLNQAKEELKKRENVITAAFSKHEKLEGELKQANLNLASQAREIEELKLQLKEKEQDIASACSA
LSLKEDEMDKMKTDLLKKSEEVARIDSELKYKAQLLNQASEVVKRQEIELQGLQMLIREKEEELEVSTNLRKFEEEKLKVVESNLEDRTREWLLIQEGLN
KLAKEASKQVRDTNEALEDFGRVYKLLEDVRSELISSQKSLAFSRKQMEEQEQLLKTQLAELEEQRKSVMSYLNSLKNAKIEVESERVKLRTAEARNKEL
ERDLSMEKELVEELQKELEKEKSSLQQEIEKTSFLQQELLQKNIEFGEMQHLLQAKESDLVEAKLDIQNLKSEQASLQLILEDKDLQLFDARKNLDEVNQ
EVAELRMLMSSKEEQLVQATTMIKEKEEHVQVMQDELNNTRVKVSEAESVVERIVELTNELVISIKDQNELRQSNNMTLEFFQQPLDELSDDFRLQKKQY
ETELKFSRESLRVKEMEVLAAKRALAIKDEELKTVLERLDTKEKELRKLKEEAVEDANDLRKLYSLAQERIGESSVGDLAIEKLKLEAAQLEVEAATSAL
QKLAEMSRELLNKASLSIEADADIFMPNGSGPGLVLLENNECFKEVKTEVARLSSLTEQLLQDAGITVGAD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G32190 Myosin heavy chain-related pro... Potri.006G255800
[exp]
0 1
AT1G16250 Galactose oxidase/kelch repeat... Potri.010G004500
[exp]
1.00 0.7926
AT5G67140 F-box/RNI-like superfamily pro... Potri.005G140000
[exp]
4.24 0.7619
AT4G32440 Plant Tudor-like RNA-binding p... Potri.018G030500
[exp]
6.92 0.7549
AT1G52080 AR791 actin binding protein family (... Potri.001G191300
[exp]
7.74 0.7590
AT3G54380 AtSAC3C yeast Sac3 homolog C, SAC3/GAN... Potri.001G035700
[exp]
9.48 0.7195
AT3G45740 hydrolase family protein / HAD... Potri.008G045700
[exp]
12.12 0.7409
AT4G06676 unknown protein Potri.004G222300
[exp]
12.84 0.7266
AT1G65430 ATARI8, ARI8 ARABIDOPSIS ARIADNE 8, ARIADNE... Potri.010G180600
[exp]
17.14 0.7141
Potri.001G379150
[exp]
17.49 0.7470
AT5G15270 RNA-binding KH domain-containi... Potri.014G045000
[exp]
19.05 0.6966

Potri.006G255800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.