Plant FIBer expression Database

Pt-APT2.2 (Potri.006G255900) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-APT2.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G11160 315 / 4e-111 APT5 adenine phosphoribosyltransferase 5 (.1)
AT1G80050 300 / 3e-105 PHT1.1, ATAPT2, APT2 adenine phosphoribosyl transferase 2 (.1)
AT4G12440 273 / 8e-95 APT4 adenine phosphoribosyl transferase 4 (.1.2)
AT4G22570 273 / 1e-94 APT3 adenine phosphoribosyl transferase 3 (.1)
AT1G27450 260 / 2e-89 APRT, ATAPT1, APT1 ARABIDOPSIS THALIANA ADENINE PHOSPHORIBOSYLTRANSFERASE 1, adenine phosphoribosyl transferase 1 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G026200
[exp]
360 / 7e-129 AT5G11160 313 / 2e-110 adenine phosphoribosyltransferase 5 (.1)
Potri.001G121400
[exp]
276 / 1e-95 AT4G22570 298 / 9e-105 adenine phosphoribosyl transferase 3 (.1)
Potri.014G017200
[exp]
262 / 2e-89 AT1G27450 277 / 2e-94 ARABIDOPSIS THALIANA ADENINE PHOSPHORIBOSYLTRANSFERASE 1, adenine phosphoribosyl transferase 1 (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002924
[exp]
326 / 3e-115 AT5G11160 316 / 3e-111 adenine phosphoribosyltransferase 5 (.1)
Lus10001497
[exp]
325 / 5e-115 AT5G11160 315 / 4e-111 adenine phosphoribosyltransferase 5 (.1)
Lus10024612
[exp]
275 / 2e-95 AT4G22570 305 / 2e-107 adenine phosphoribosyl transferase 3 (.1)
Lus10004344
[exp]
274 / 7e-95 AT4G22570 301 / 4e-106 adenine phosphoribosyl transferase 3 (.1)
Lus10032249
[exp]
270 / 4e-93 AT4G12440 299 / 4e-105 adenine phosphoribosyl transferase 4 (.1.2)
Lus10018695
[exp]
269 / 7e-93 AT1G27450 303 / 9e-107 ARABIDOPSIS THALIANA ADENINE PHOSPHORIBOSYLTRANSFERASE 1, adenine phosphoribosyl transferase 1 (.1.2.3)
Lus10007757
[exp]
269 / 7e-93 AT1G27450 303 / 1e-106 ARABIDOPSIS THALIANA ADENINE PHOSPHORIBOSYLTRANSFERASE 1, adenine phosphoribosyl transferase 1 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0533 PRTase-like PF00156 Pribosyltran Phosphoribosyl transferase domain
Representative CDS sequence
>Potri.006G255900.1 pacid=42767556 polypeptide=Potri.006G255900.1.p locus=Potri.006G255900 ID=Potri.006G255900.1.v4.1 annot-version=v4.1
ATGTTTGCAGCTGAGAATGGACTCAAAAGTGACCCAAGATTACAAGGCATCTCTGAAGCTATCAGGGTGGTGCCTCACTTTCCTAAACAAGGGATAATGT
TTCAAGATATAACAACTTTGTTGCTGGATCATAAAGTTTTCAAGGACACAGTGGATATCTTTGTCGATCGCTATAGAGACATGAACATTTCTGTTGTTGC
TGGAGTTGAAGCTAGAGGGTTCATGTTTGGCCCAGCAATTGCCTTAGCTATTGGTGCAAAGTTTGTTCCTTTAAGAAAACCCAGAAAGTTGCCAGGTGAA
GTGATTTCTGAAGCATATGAGCTGGAATACGGAACTGATTGTCTAGAAATACATGTTGGTGCTGTTCAGCCTGGCGAACGTGCAATTGTAATTGATGATT
TGGTAGCTACAGGAGGGACCTTGTCAGCAGCAATAAGCCTCTTGGAACGAGTGGGGGCTGAAGTAATTGAGTGTGCTTGTGTGATTGGGGTGCCGGACAT
CAAGGGACAGTGCAGGCTCAATGGCAAGCCACTTTATATCCTCGTGGAGCCACGCCAAATCGATAATTGTTGTTAA
AA sequence
>Potri.006G255900.1 pacid=42767556 polypeptide=Potri.006G255900.1.p locus=Potri.006G255900 ID=Potri.006G255900.1.v4.1 annot-version=v4.1
MFAAENGLKSDPRLQGISEAIRVVPHFPKQGIMFQDITTLLLDHKVFKDTVDIFVDRYRDMNISVVAGVEARGFMFGPAIALAIGAKFVPLRKPRKLPGE
VISEAYELEYGTDCLEIHVGAVQPGERAIVIDDLVATGGTLSAAISLLERVGAEVIECACVIGVPDIKGQCRLNGKPLYILVEPRQIDNCC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G11160 APT5 adenine phosphoribosyltransfer... Potri.006G255900
[exp]
0 1 Pt-APT2.2
AT5G11160 APT5 adenine phosphoribosyltransfer... Potri.018G026200
[exp]
5.83 0.8340 Pt-APT2.1
AT5G59305 unknown protein Potri.001G237700
[exp]
6.00 0.8474
AT4G39410 WRKY ATWRKY13, WRKY1... ARABIDOPSIS THALIANA WRKY DNA-... Potri.007G078200
[exp]
6.32 0.8460 WRKY13.2
AT4G14010 RALFL32 ralf-like 32 (.1) Potri.001G321500
[exp]
6.78 0.8112
AT3G50150 Plant protein of unknown funct... Potri.016G040100
[exp]
7.14 0.8661
AT5G67265 unknown protein Potri.007G048400
[exp]
18.00 0.8214
AT4G35930 F-box family protein (.1) Potri.005G110200
[exp]
20.63 0.8523
AT5G65160 TPR14 tetratricopeptide repeat 14, t... Potri.007G091200
[exp]
37.46 0.8353
AT3G63480 ATP binding microtubule motor ... Potri.005G038900
[exp]
39.57 0.8393
AT3G17365 S-adenosyl-L-methionine-depend... Potri.010G153200
[exp]
44.24 0.8285

Potri.006G255900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.