Plant FIBer expression Database

Potri.006G256000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G32160 757 / 0 Phox (PX) domain-containing protein (.1)
AT2G25350 647 / 0 Phox (PX) domain-containing protein (.1)
AT3G15920 497 / 2e-166 Phox (PX) domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G026000
[exp]
1196 / 0 AT4G32160 736 / 0.0 Phox (PX) domain-containing protein (.1)
Potri.001G201900
[exp]
623 / 0 AT3G15920 590 / 0.0 Phox (PX) domain-containing protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002925
[exp]
862 / 0 AT4G32160 709 / 0.0 Phox (PX) domain-containing protein (.1)
Lus10001496
[exp]
442 / 1e-149 AT4G32160 294 / 1e-92 Phox (PX) domain-containing protein (.1)
Lus10001495
[exp]
334 / 2e-110 AT4G32160 323 / 9e-107 Phox (PX) domain-containing protein (.1)
Lus10023125
[exp]
206 / 6e-57 AT3G15920 365 / 2e-115 Phox (PX) domain-containing protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00787 PX PX domain
Representative CDS sequence
>Potri.006G256000.1 pacid=42768741 polypeptide=Potri.006G256000.1.p locus=Potri.006G256000 ID=Potri.006G256000.1.v4.1 annot-version=v4.1
ATGATGCAGAGGCAGCGGAGTCCACCGAAGCACAGGCACGACGGGACTTCGCCGTTGCCGTTAGGGATGGATTGGAGTCCTCCGCCTCGAAAATGGAGTG
GGCGAGAAACCGTTTGGCCCCATGATCCTAGAACAGGATGGAGTTACTGTGTCACTATACCCTCCTGGGCCGTGCTCCCAAAATCAAGAGATTCAGATCC
CGTAGTGTTTTACAGGGTTCAGGTGGGTGTACAATCACCAGAAGGGGCTACAACCATCCGTGGAGTGTTGAAAAGATTTAATGATTTTATGAAGTTATTT
ACCGATCTTAAGAAGGCATTTCCCAGGAAAAATATCCCACCAGCTCCACCCAAGGGACTTCTGCGTTTGAAAAGCAGGGCACTCCTGGAAGAGAGAAGGT
ACTCTTTGGAGCAATGGATGACAAAACTGCTGTCTGACATTGATTTATCAAGAAGTGTGGCAGTGGCATCCTATTTTGAATTAGAAGCTGCTGCGAGGTC
GTCATTCCAAGATGGAAATCAGCAGTCATCAGAAGCAAGCCCTACCGGTGATGGTTCAACCTCCTCACTTCAGATACCACCAAATTTAAGCTCTTCTCTT
GCTACCAGTTCATCAATTGCATCAGATTATGGCAGTGATACTGCTTATGAGACGTCTGATCTTGGAACACCAAAGCTAGCAAGAGATGGCAATTTTGGAA
TTGGCTTGGGGGATCTAGCACTGGATGAAGATTTGACCGGTCCTATAGAAAAACTTGTGAAGTATGGTATGACGAATATCGACGAGGGACTGTTTATGGG
ACAGACTATTCTAGAGCAACTAGAAGGTTTTCCTAGGCATACACCACATGGTGGACATATGAACAATGTTATAGGGAAAGATGGGTATAATGGAAATGCA
TCTAAAGATTCATTTCTTACTGGAAATGGGATGGAACTTTACTCTGAGCCAGAGCCTGGTAAGGTATTTGGTCATGTTAGAAAGTTATCTTGTGATAGTG
TTGAAAGTGATGGAAGTTCTCTACGAGGAAGTGAAATATCAAACTCTGGGATACCAAATTCATCTGGTGATGGATATCTTGACCTTCCAGGTGTTGCTGA
GATTTCGAGTTCTACAGAAATTCTTGGTAACACGGAGATGCAGTTTTCAGGTGATGCACACATAGTACTTCCTTTGGATCAGCGTCATAAAATGAACAGG
GTTCTGTTAACGATGCAGCGGAGGCTAGTCACAGTTAAAACAGACATGGAAGACCTCGTATCAAGATTGAACCAGGAAATAGCTGTAAAAGATTACCTGA
CAACAAAGGTCAAGGATCTGGAAGTGGAATTTGAAACTACAAAACAGAAAAATAAAGAAACCATGCAGCAAGCTATTTTAATTGAGAGGGAAAGGCTTAC
CCAAATGCAGTGGGATATGGAGGAATTGAGACGGAAATCATTGGAAATGGAATTGAAATTGAAGTCAAAAGAGGGTGAGCAGCGGAGTACAGAATTTCAA
ATGGCACCTACTGACCATGAAAAAGACATAGCCCTTGAGGAGTTGGATGCTACTAGAAAGCAACTGGAGGAATTGTCCAAGCGATATGAAGAGCTTGAAG
CGAAATCGAAAGCAGATTTTAAATTTCTCGCTAAAGAATTTAAATCCCTCAAAAGTTCCCAGACAACATTGAAGCAAGAGCTTAGTCAATCCCTGAAGGA
AAAATCTGAAGTTGAGAAACTTCTTTACGAGGAAAGAGAAATGAAGGAGCATGAGAAAATTACTCGGAAGAAACTGCTAAATGATTGCAGCATCCTGTAT
GACCAGCTGCAAGAATGCAACGGCAATTTGTCCAGTGAAGATAATTTTATTGTGAACTCTTCTCTGGGAGATGCTTTAGATTTGCTGACCACATCTGATG
ATCAAATCAGCCATCTACTAGCAGAGGCACAACTATTATTTGAAGATGATAAAACCACTGCTCCTAACAAGGATACAAGAGCAACAGATGATGAATTGAG
GGAGATGCTGGCAAATATCTTCACTGATAATGCTAAGTTGAGGAAACAGGTGAACTCTATTATGCGTCATGCTCTTAAAATGGGCAGCATCTGTAGGAGT
AGTAATGACGAGGCTCCTTCAAGCAATAATCATGATGTAGAAAGATAA
AA sequence
>Potri.006G256000.1 pacid=42768741 polypeptide=Potri.006G256000.1.p locus=Potri.006G256000 ID=Potri.006G256000.1.v4.1 annot-version=v4.1
MMQRQRSPPKHRHDGTSPLPLGMDWSPPPRKWSGRETVWPHDPRTGWSYCVTIPSWAVLPKSRDSDPVVFYRVQVGVQSPEGATTIRGVLKRFNDFMKLF
TDLKKAFPRKNIPPAPPKGLLRLKSRALLEERRYSLEQWMTKLLSDIDLSRSVAVASYFELEAAARSSFQDGNQQSSEASPTGDGSTSSLQIPPNLSSSL
ATSSSIASDYGSDTAYETSDLGTPKLARDGNFGIGLGDLALDEDLTGPIEKLVKYGMTNIDEGLFMGQTILEQLEGFPRHTPHGGHMNNVIGKDGYNGNA
SKDSFLTGNGMELYSEPEPGKVFGHVRKLSCDSVESDGSSLRGSEISNSGIPNSSGDGYLDLPGVAEISSSTEILGNTEMQFSGDAHIVLPLDQRHKMNR
VLLTMQRRLVTVKTDMEDLVSRLNQEIAVKDYLTTKVKDLEVEFETTKQKNKETMQQAILIERERLTQMQWDMEELRRKSLEMELKLKSKEGEQRSTEFQ
MAPTDHEKDIALEELDATRKQLEELSKRYEELEAKSKADFKFLAKEFKSLKSSQTTLKQELSQSLKEKSEVEKLLYEEREMKEHEKITRKKLLNDCSILY
DQLQECNGNLSSEDNFIVNSSLGDALDLLTTSDDQISHLLAEAQLLFEDDKTTAPNKDTRATDDELREMLANIFTDNAKLRKQVNSIMRHALKMGSICRS
SNDEAPSSNNHDVER

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G32160 Phox (PX) domain-containing pr... Potri.006G256000
[exp]
0 1
AT5G24350 unknown protein Potri.012G020000
[exp]
6.00 0.7923
AT1G28260 Telomerase activating protein ... Potri.011G053800
[exp]
7.93 0.7454
AT4G10930 unknown protein Potri.001G089900
[exp]
8.24 0.7613
AT1G19270 DA1 DA1 (.1) Potri.002G132700
[exp]
9.48 0.7164
AT1G28420 HD HB-1 homeobox-1 (.1) Potri.011G057700
[exp]
12.80 0.7810
AT4G33060 Cyclophilin-like peptidyl-prol... Potri.006G225167
[exp]
17.46 0.7608
AT2G17200 DSK2 ubiquitin family protein (.1) Potri.005G100200
[exp]
19.87 0.6789
AT2G46020 CHA2, ATBRM, CH... CHROMATIN REMODELING 2, ARABID... Potri.014G086500
[exp]
21.35 0.7739
AT4G27220 NB-ARC domain-containing disea... Potri.019G014340
[exp]
24.33 0.7346
AT4G10780 LRR and NB-ARC domains-contain... Potri.019G014372
[exp]
25.80 0.7305

Potri.006G256000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.