Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32150 352 / 4e-125 ATVAMP711, VAMP7C vesicle-associated membrane protein 711 (.1) AT5G11150 345 / 5e-122 ATVAMP713 vesicle-associated membrane protein 713 (.1) AT2G25340 343 / 2e-121 ATVAMP712 vesicle-associated membrane protein 712 (.1) AT5G22360 263 / 2e-89 ATVAMP714 vesicle-associated membrane protein 714 (.1) AT2G33120 142 / 2e-42 ATVAMP722, SAR1 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) AT1G04760 142 / 2e-42 ATVAMP726 vesicle-associated membrane protein 726 (.1) AT1G04750 141 / 5e-42 ATVAMP7B, ATVAMP721, VAMP7B VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) AT2G32670 139 / 2e-40 ATVAMP725 vesicle-associated membrane protein 725 (.1) AT3G54300 136 / 1e-39 ATVAMP727 vesicle-associated membrane protein 727 (.1.2) AT4G15780 129 / 4e-37 ATVAMP724 vesicle-associated membrane protein 724 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G025800 [exp] 394 / 2e-141 AT4G32150 366 / 2e-130 vesicle-associated membrane protein 711 (.1) Potri.018G125900 [exp] 285 / 2e-98 AT4G32150 276 / 1e-94 vesicle-associated membrane protein 711 (.1) Potri.001G219200 [exp] 266 / 6e-91 AT5G22360 369 / 1e-131 vesicle-associated membrane protein 714 (.1) Potri.009G018900 [exp] 265 / 2e-90 AT5G22360 367 / 6e-131 vesicle-associated membrane protein 714 (.1) Potri.012G119600 [exp] 146 / 7e-44 AT2G33120 363 / 2e-129 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.003G177700 [exp] 144 / 6e-43 AT1G04750 389 / 1e-139 VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) Potri.001G050400 [exp] 140 / 1e-41 AT2G33120 365 / 4e-130 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.015G118300 [exp] 139 / 4e-41 AT2G33120 359 / 8e-128 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.002G240900 [exp] 139 / 5e-41 AT2G33120 355 / 3e-126 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041035 [exp] 349 / 3e-124 AT5G11150 343 / 9e-122 vesicle-associated membrane protein 713 (.1) Lus10001492 [exp] 351 / 5e-124 AT5G11150 367 / 1e-130 vesicle-associated membrane protein 713 (.1) Lus10006192 [exp] 351 / 3e-123 AT5G11150 345 / 9e-121 vesicle-associated membrane protein 713 (.1) Lus10043394 [exp] 273 / 1e-93 AT5G22360 400 / 6e-144 vesicle-associated membrane protein 714 (.1) Lus10034189 [exp] 273 / 2e-93 AT5G22360 400 / 6e-144 vesicle-associated membrane protein 714 (.1) Lus10002926 [exp] 216 / 2e-64 AT2G25320 2345 / 0.0 TRAF-like family protein (.1) Lus10011870 [exp] 145 / 2e-43 AT1G04760 376 / 3e-134 vesicle-associated membrane protein 726 (.1) Lus10022804 [exp] 144 / 1e-42 AT1G04760 377 / 1e-134 vesicle-associated membrane protein 726 (.1) Lus10040611 [exp] 142 / 4e-42 AT1G04760 369 / 1e-131 vesicle-associated membrane protein 726 (.1) Lus10018296 [exp] 140 / 2e-41 AT1G04760 366 / 2e-130 vesicle-associated membrane protein 726 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [poplar] [flax] SNARE-fusion PF00957 [poplar] [flax] Synaptobrevin Synaptobrevin CL0431 [poplar] [flax] PF PF13774 [poplar] [flax] Longin Regulated-SNARE-like domain
Representative CDS sequence Show only first row Show all	>Potri.006G256200.1 pacid=42767830 polypeptide=Potri.006G256200.1.p locus=Potri.006G256200 ID=Potri.006G256200.1.v4.1 annot-version=v4.1 ATGGCGATCCTGTACGCGCTAGTGGCAAGGGGATCGGTGGTGCTAGCGGAGTTTAGCTCTACAGCAACGAACGCAAGCGCGATTGCTAGGCAAATACTGG ATAAGATACCTGGCAATGATGATAGCAATGTCTCTTACTCTCAAGATCGTTATATTTTTCATGTTAAACGCACCGATGGCCTCGCCGTTCTTTGCATGGC CGATGAAACCGCCGGCAGAAGAATTCCGTTTGCATTTCTTGAGGACATTCATCAGAGATTTGCCAGGACTTATGGACGTGCAGTTATTACAGCTCAAGCT TATGCCATGAATGATGAATTCTCAAGAGTTTTGAGCCAACAAATGGAGTACTACACTAATGATCCGAATGCAGATAGGATAAATAGACTGAAAGGTGAAA TGAGCCAGGTGCGAAATGTTATGATTGAGAACATTGACAAAGTTTTGGAGAGAGGTGATCGCTTGGAATTGCTGGTAGATAAAACCGCCAACATGCAAGG AAACACCTTCCGTTTCAGAAAGCAAGCTCGTCGTTTCAGCAGCGCAGTATGGTGGAGAAATGTCAAGCTCACGGTTGCTTTGATTTTACTACTACTAGTG ATTATCTACGTTGTGCTGGCCGTTGTATGCCATGGAGTTACACTGCCTACATGCCGAAAGTAA
AA sequence Show only first row Show all	>Potri.006G256200.1 pacid=42767830 polypeptide=Potri.006G256200.1.p locus=Potri.006G256200 ID=Potri.006G256200.1.v4.1 annot-version=v4.1 MAILYALVARGSVVLAEFSSTATNASAIARQILDKIPGNDDSNVSYSQDRYIFHVKRTDGLAVLCMADETAGRRIPFAFLEDIHQRFARTYGRAVITAQA YAMNDEFSRVLSQQMEYYTNDPNADRINRLKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFSSAVWWRNVKLTVALILLLLV IIYVVLAVVCHGVTLPTCRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32150		ATVAMP711, VAMP...	vesicle-associated membrane pr...		Potri.006G256200 [exp]	0	1
AT3G46460		UBC13	ubiquitin-conjugating enzyme 1...		Potri.010G206832 [exp]	1.00	0.8747
AT1G35780			unknown protein		Potri.002G095300 [exp]	4.58	0.8129
AT2G43070		ATSPPL3	ARABIDOPSIS THALIANA SIGNAL PE...		Potri.002G232200 [exp]	6.48	0.7605
AT2G35140			DCD (Development and Cell Deat...		Potri.015G122300 [exp]	6.70	0.8274
AT1G66070			Translation initiation factor ...		Potri.004G082200 [exp]	12.96	0.8487
AT2G32520			alpha/beta-Hydrolases superfam...		Potri.014G155200 [exp]	18.30	0.7443
AT5G02780		GSTL1	glutathione transferase lambda...		Potri.010G214800 [exp]	21.63	0.7910
AT4G15470			Bax inhibitor-1 family protein...		Potri.008G199200 [exp]	22.09	0.8070
AT1G29530			unknown protein		Potri.011G077700 [exp]	22.91	0.7875
AT4G22540		ORP2A	OSBP(oxysterol binding protein...		Potri.001G121700 [exp]	24.24	0.8215

Compare expression of checked genes

Potri.006G256200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.