Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52520 671 / 0 FAR1_related FRS6 FAR1-related sequence 6 (.1) AT1G80010 546 / 0 FAR1_related FRS8 FAR1-related sequence 8 (.1) AT4G15090 397 / 1e-127 FAR1_related FAR1 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) AT3G22170 371 / 2e-117 FAR1_related FHY3 far-red elongated hypocotyls 3 (.1.2) AT1G76320 353 / 8e-112 FAR1_related FRS4 FAR1-related sequence 4 (.1.2) AT4G19990 335 / 1e-104 FAR1_related FRS1 FAR1-related sequence 1 (.1.2) AT2G27110 324 / 1e-99 FAR1_related FRS3 FAR1-related sequence 3 (.1.2.3) AT4G38180 323 / 1e-99 FAR1_related FRS5 FAR1-related sequence 5 (.1) AT2G32250 312 / 2e-95 FAR1_related FRS2 FAR1-related sequence 2 (.1.2.3.4) AT3G06250 305 / 2e-93 FAR1_related FRS7 FAR1-related sequence 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G201600 [exp] 743 / 0 AT1G52520 606 / 0.0 FAR1-related sequence 6 (.1) Potri.003G031400 [exp] 716 / 0 AT1G52520 931 / 0.0 FAR1-related sequence 6 (.1) Potri.003G031200 [exp] 656 / 0 AT1G80010 726 / 0.0 FAR1-related sequence 8 (.1) Potri.006G020600 [exp] 401 / 4e-129 AT4G15090 1078 / 0.0 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) Potri.003G110300 [exp] 402 / 1e-128 AT4G15090 799 / 0.0 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) Potri.003G207100 [exp] 387 / 1e-124 AT1G76320 947 / 0.0 FAR1-related sequence 4 (.1.2) Potri.006G020700 [exp] 372 / 5e-118 AT3G22170 1184 / 0.0 far-red elongated hypocotyls 3 (.1.2) Potri.016G018300 [exp] 369 / 8e-117 AT3G22170 1139 / 0.0 far-red elongated hypocotyls 3 (.1.2) Potri.004G209000 [exp] 354 / 2e-111 AT4G38180 1163 / 0.0 FAR1-related sequence 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031825 [exp] 292 / 1e-90 AT1G76320 656 / 0.0 FAR1-related sequence 4 (.1.2) Lus10026854 [exp] 50 / 3e-06 AT3G59470 121 / 1e-32 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) Lus10020226 [exp] 46 / 4e-05 AT3G59470 120 / 7e-33 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03101 [poplar] [flax] FAR1 FAR1 DNA-binding domain CL0274 [poplar] [flax] PF04434 [poplar] [flax] SWIM SWIM zinc finger CL0219 [poplar] [flax] RNase_H PF10551 [poplar] [flax] MULE MULE transposase domain
Representative CDS sequence Show only first row Show all	>Potri.006G256300.3 pacid=42768418 polypeptide=Potri.006G256300.3.p locus=Potri.006G256300 ID=Potri.006G256300.3.v4.1 annot-version=v4.1 ATGGAAGAAGTTTGTTTGAATAGTGAGCCGGTGTTTGACGAAGGCGATGACTATGAAGTTGAGGGAGACAGCAGTGCAGTGGGATGTGATGATGAAACTG GTGAAAATTGTTCGAAGAAAGAACGACCAGAACCGACCGTGGGTTTGGAGTTTGATTCTTTTGATGAAGCTTATGATTTTTACAATGTTTATGCCAAGGA ACAAGGTTTTGGCATTAGAGTGAGCAACTCTTGGTTCAGGTCAAAGAGAAAAGAACGTTATAGAGCGAAACTTAGTTGCAGTAGTGCAGGTTTTAAGAAA AAGAGTGAAGCAAACAATCCAAGACCGGAAACAAGAACTGGCTGTCCTGCAATGGTCGTCATTAGGCTAGTGGACTCTAAAAGATGGAGAATAGTTGATG TTGAGCTTGAACATAATCATCCGGTGAATCCTCAAATCAAAAGGTTTTATAAGTCTCATAAACGGATGATTCTTGCAGCCAAAAAAGCACAACCACCACC AGAGCCTGTCACCGAAGTACACACTATCAGGTTGCATCGTAGAGCTCTCATGAATACTGGGTGTAATGTGTACTTAAATGTTGATGAAAGGGGGCATGTT GATCATGTTGATCACTTCAAACATTTGGAACTCAAAGAAGGAGATGCACTTGCAGTATATAACTACTTCTGTCGCATGAAGTTGACAAATCCTAACTTCT TTTACTTAATGGATCTCGATGACGAGGGGCGCCTGAGGAATGTGTTTTGGGCTGATGCTAGGTCCAGGGTTGCATATGGTTTCTTTTGTGACACGGTAAC AATTGACACAACATGCCTGGCAAACAGGTATGAGATACCTCTTATTTCATTTGTTGGTGTGAACCACCATGGACAATCTGTGTTACTGGGATGTGGCTTC CTTGGACACGAGTCTATGGAATATTTTGTCTGGATTTTCAGGGCATGGATCAAGTGCATGCAAGGGCATCTTCCACAGGTTATCATTACTGACCAAAACA AACCCTTGCAAAGTGCAGTATCTGAGGTTTTCCCAAATGCTCGTCATTGTTACAATGTGTGTTGTATCACCCAGAGAGTTCCAGAGAGGTTGGGAGGGTT GCAGGGATATGAAGCCATCAAAAGACAATTAAATAAAGCTGTCTATAATTCCCTAAAGATAGCTGAGTTTGAAACTTCTTGGGCTGACATGATCAAGTGC CATGGTCTTGGTGATAATAAATGGCTTCAAACGTTGTATAAAGAAAGACAAGCGTGGGTTCCAGTCTACTTAAAGGACATATTTTTTGTGGGAATGATCC CCATCCAAGAAGATGAGAGCTTGAATGCCTTTTTTGATGGTTATGTACATAAGCATACATCGTTTAAGGAATTTGTAGATAAGTATGATCTCGCCCTACA CCGTAAACACATGAAAGAAGCCATGGCAGATCTGGAGTCCACAAATTCAAGCTACGAGTTGAAAACAAGATGCAACTTTGAGGTGCAGCTCTCCAAAGTG TATACAAAAGAAATCTTTAGAAAGTTCCAGTCTGAAGTTGAGGGGATGTATTCTTGTTTTAACACAAAACAGCTGAGAGTTAATGGACAAATAGCAACAT ACATAGTCAAAGAACGAGTTGAAGTTGCAGGAAGTGAGAAGGAGGTTAGGCATTTTGAAGTTTTATATGATACAAGTCAAGCAGATATCCGATGCATATG CTGTTTGTTCAATTACAAAGGTTATCTATGTAGGCACGCCTTGAACGTGCTTAATTATAATGGTGTGGAAGAAGTCCCTTCTCGCTACATTCTGCCACGT TGGGGCAAAGATTATAAGCGCAGGGGTCTTCTAGATCACAATTCCGGTGACGTTGATGTGGATAACCCAATTTACTGGCATAATCTTCTGTATAGGTATG CCATTCCAGTTGTGGAAGTAGGAGCAGAGTCTTCAGATCATTATAAGATTGCATTGCAAGAACTGGAAGAGTTGTTGAACAAATTCAATCTTGCAGAGGA CAACTTGGTGTAA
AA sequence Show only first row Show all	>Potri.006G256300.3 pacid=42768418 polypeptide=Potri.006G256300.3.p locus=Potri.006G256300 ID=Potri.006G256300.3.v4.1 annot-version=v4.1 MEEVCLNSEPVFDEGDDYEVEGDSSAVGCDDETGENCSKKERPEPTVGLEFDSFDEAYDFYNVYAKEQGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKK KSEANNPRPETRTGCPAMVVIRLVDSKRWRIVDVELEHNHPVNPQIKRFYKSHKRMILAAKKAQPPPEPVTEVHTIRLHRRALMNTGCNVYLNVDERGHV DHVDHFKHLELKEGDALAVYNYFCRMKLTNPNFFYLMDLDDEGRLRNVFWADARSRVAYGFFCDTVTIDTTCLANRYEIPLISFVGVNHHGQSVLLGCGF LGHESMEYFVWIFRAWIKCMQGHLPQVIITDQNKPLQSAVSEVFPNARHCYNVCCITQRVPERLGGLQGYEAIKRQLNKAVYNSLKIAEFETSWADMIKC HGLGDNKWLQTLYKERQAWVPVYLKDIFFVGMIPIQEDESLNAFFDGYVHKHTSFKEFVDKYDLALHRKHMKEAMADLESTNSSYELKTRCNFEVQLSKV YTKEIFRKFQSEVEGMYSCFNTKQLRVNGQIATYIVKERVEVAGSEKEVRHFEVLYDTSQADIRCICCLFNYKGYLCRHALNVLNYNGVEEVPSRYILPR WGKDYKRRGLLDHNSGDVDVDNPIYWHNLLYRYAIPVVEVGAESSDHYKIALQELEELLNKFNLAEDNLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52520	FAR1_related	FRS6	FAR1-related sequence 6 (.1)		Potri.006G256300 [exp]	0	1
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.013G130600 [exp]	2.44	0.9104
AT5G59600			Tetratricopeptide repeat (TPR)...		Potri.001G014900 [exp]	5.19	0.9158
AT4G02210			unknown protein		Potri.005G252500 [exp]	9.16	0.8689
AT1G77360			Tetratricopeptide repeat (TPR)...		Potri.005G181900 [exp]	11.40	0.8057
AT2G36730			Pentatricopeptide repeat (PPR)...		Potri.017G083900 [exp]	12.96	0.8877
AT5G64816			unknown protein		Potri.005G156400 [exp]	13.26	0.8581
AT5G38600			Proline-rich spliceosome-assoc...		Potri.004G104400 [exp]	16.79	0.8016
AT1G30290			Tetratricopeptide repeat (TPR)...		Potri.011G082300 [exp]	17.20	0.9040
AT3G26782			Tetratricopeptide repeat (TPR)...		Potri.001G322100 [exp]	18.43	0.8693
AT1G69680			Mog1/PsbP/DUF1795-like photosy...		Potri.019G023800 [exp]	22.44	0.8484

Compare expression of checked genes

Potri.006G256300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.