Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25320 2378 / 0 TRAF-like family protein (.1) AT2G25330 1021 / 0 TRAF-like family protein (.1) AT3G58210 89 / 3e-18 TRAF-like family protein (.1) AT5G06600 90 / 1e-17 AtUBP12, UBP12 ubiquitin-specific protease 12 (.1.2.3) AT3G11910 90 / 1e-17 AtUBP13, UBP13 ubiquitin-specific protease 13 (.1.2) AT3G58290 81 / 5e-16 TRAF-like superfamily protein (.1.2.3) AT3G58340 78 / 6e-15 TRAF-like family protein (.1) AT5G26260 77 / 2e-14 TRAF-like family protein (.1) AT3G17380 72 / 4e-13 TRAF-like family protein (.1) AT3G58200 70 / 3e-12 TRAF-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G025600 [exp] 3038 / 0 AT2G25320 2378 / 0.0 TRAF-like family protein (.1) Potri.006G065300 [exp] 627 / 0 AT2G25320 610 / 0.0 TRAF-like family protein (.1) Potri.003G103200 [exp] 92 / 2e-19 AT3G17380 251 / 2e-82 TRAF-like family protein (.1) Potri.008G012600 [exp] 95 / 3e-19 AT5G06600 1909 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.006G198300 [exp] 95 / 3e-19 AT5G06600 1954 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.016G064100 [exp] 95 / 4e-19 AT5G06600 1943 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.014G055400 [exp] 89 / 1e-18 AT3G17380 244 / 2e-79 TRAF-like family protein (.1) Potri.010G245100 [exp] 91 / 6e-18 AT5G06600 1907 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.008G099600 [exp] 85 / 3e-17 AT3G17380 344 / 1e-118 TRAF-like family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001490 [exp] 2616 / 0 AT2G25320 2419 / 0.0 TRAF-like family protein (.1) Lus10002926 [exp] 2544 / 0 AT2G25320 2345 / 0.0 TRAF-like family protein (.1) Lus10005821 [exp] 360 / 4e-113 AT2G25320 309 / 7e-96 TRAF-like family protein (.1) Lus10029309 [exp] 94 / 6e-19 AT5G06600 1957 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10008949 [exp] 93 / 2e-18 AT5G06600 1904 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10034130 [exp] 91 / 1e-17 AT3G11910 1888 / 0.0 ubiquitin-specific protease 13 (.1.2) Lus10043456 [exp] 91 / 1e-17 AT5G06600 1925 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10025569 [exp] 76 / 1e-13 AT5G06600 149 / 7e-39 ubiquitin-specific protease 12 (.1.2.3) Lus10019772 [exp] 76 / 2e-13 AT5G50400 287 / 2e-84 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10022207 [exp] 74 / 2e-12 AT1G04300 722 / 0.0 TRAF-like superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0389 [poplar] [flax] TRAF PF00917 [poplar] [flax] MATH MATH domain
Representative CDS sequence Show only first row Show all	>Potri.006G256400.1 pacid=42770425 polypeptide=Potri.006G256400.1.p locus=Potri.006G256400 ID=Potri.006G256400.1.v4.1 annot-version=v4.1 ATGAAACACAGCAGCAGCAGCACCACCACCACTGCCACTTCAATGGAAGCGGCAGCCACATCTTCTACCTGCTCATCATCTGCCCCTATACCTTCTCACT CCGACCAATCCTCTCCCGGCACCTCATCATCGACAGCAATGACGACAACAACAACCTCGACAATCGACGATATCACCGTGGGGACAACGCTAGACGGAAC GAACGGAGCGGCAGCAGAAACCGTGACAATCGATCGGCGAGGGGAGTATTCCGCAACCTGCAAATGGACGGTACAGAGTTTTCCACGTGTTAAAGCTAGG GCATTATGGAGTAAATATTTTGAAGTAGGGGGTTACGATTGCCGTTTATTAATCTACCCTAAAGGTGACTCCCAAGCTTTGCCTGGGTACATCTCAATCT ATCTTCAAATCATGGACCCTCGCGGTACATCTTCGTCAAAATGGGATTGTTTTGCTAGTTACCGTTTATCAATTGTTAATCCACTTGATGATTCCAAAAC CATACACCGTGATTCATGGCATCGGTTTTCCAGTAAGAAAAAATCACACGGTTGGTGTGATTTTACCCCGGCTTCTACCGTATTTGATTCCAAATTAGGC TATTTGTTTAATAATGATTGCGTTTTAATCACCGCTGATATTTTGATTTTAAACGAATCTGTTAGTTTTATGCGTGATAATAGTAGTAGCAGCACTAGTA ATAATGAGGTGCAATCGGGGGTTTCGTTATCAATTTCGTCCAATTCGGTAGCTGTGGGACCGGTATCGGATGTGTTAAGTGGGAAATGTACATGGAAAGT GCATAATTTTAGTTTGTTTAAGGAAATGATTAAGACTCAGAAGATAATGAGTCCGGTGTTTCCAGCAGGGGAATGTAATTTGAGGATTAGTGTGTATCAG AGCTCTGTGAATGGAACAGATTACTTGTCTATGTGTTTGGAGAGTAAGGATACGGAGAAGACGGTTGTTTCAGATAGGAGTTGTTGGTGTTTGTTTAGAA TGTCTGTTTTGAATCAGAAGGCTGGGGGGAGTAATCATGTGCATAGGGATTCATATGGACGGTTTGCAGCAGATAATAAGAGTGGGGATAATACGAGTTT GGGGTGGAATGATTATATGAAGATGGCTGATTTTATTGGGGCCGAGTCGGGGTTTTTGGTTGATGATACTGCGGTGTTTAGTACTTCATTTCATGTGATT AAGGAGTTCAGTAGTTTTTCGAAGAATGGGGGGTTAATTGGAGGGAGGATTGGGAGTGGAGCGAGGAAGTCCGATGGGCATATGGGGAAATTCACTTGGA GGATCGAGAATTTCATGAGGTTGAAGGATCTTTTGAAGAAGAGGAAGATTACTGGTCTTTGCATCAAGAGCAGGAGGTTTCAGATTGGGAACCGGGATTG CCGACTCATTGTTTATCCTCGAGGGCAGTCTCAGCCACCATGCCATCTTTCAGTGTTTCTTGAAGTTACAGATTTGCGAAATACTTCTAGCGATTGGAGT TGTTTTGTGAGCCATCGATTGTCAGTTGTCAACCAGAGGATGGAAGAGAAGTCTGTCACAAAGGAATCTCAAAATCGCTATTCCAAAGCTGCAAAAGATT GGGGTTGGCGTGAATTCGTGACACTCACAAGCCTGTTTGATCAAGACTCTGGGTTTCTTGTTCAAGATACCGTTGTATTCTCTGCGGAGGTTCTCATTTT GAAAGAAACATCCATTATGCAAGATTTTACGGATCAGGATACTGAGTCAACTAATGGCACTTCCCAGATTGACAAGGTTGGGAAAAGAAGTTCATTTACA TGGAAGGTGGAGAACTTCTTGTCCTTCAAAGAAATAATGGAAACTCGAAAAATATTTAGCAAGTTCTTCCAAGCTGGTGGCTGTGAGCTTCGGATTGGTG TGTATGAGTCCTTTGACACCATATGCATATATTTAGAGAGTGATCAGTCAGTTGGTAGTGATCCAGATAAAAACTTTTGGGTCAGATACAGGATGGCTGT TGTGAATCAAAAAAATCCAGCCAAGACTGTGTGGAAGGAGTCATCTATTTGTACAAAGACATGGAATAATTCTGTCCTGCAATTCATGAAGGTGTCAGAT ATGTTGGAAACAGATGCAGGGTTCCTCGTACGTGATACTGTTGTTTTTGTATGTGAAATTTTAGATTGCTGCCCATGGTTCGAGTTTTCAGATTTAGAGG TTTTGGCGTCCGAGGATGATCAGGATGCTTTAACAACTGATCCTGATGAACTCATTGATTCTGAAGATAGTGAAGGAAATAGTGGAGATGAAGAAGATAT CTTTAGAAACCTTCTTTCCAGAGCTGGGTTTCACCTCACATACGGAGATAATCCTTCACAGCCTCAGGTTACCTTAAGAGAAAAGCTTCTAATGGATGCC GGTGCAATTGCTGGTTTTCTGACTGGACTACGTGTTTATCTTGATGAACCAGCTAAAGTAAAGAAGCTGCTTCTTCCAACCAAGCTTTCTGGTGGCAATG ATGGAAAGAAGGCTGCGAAGGCTGATGAATCTTCTCCCAGCTTGATGAATTTGTTGATGGGAGTTAAAGTTTTGCAGCAGGCAATCATAGATTTACTATT GGACATAATGGTTGAATGTTGCCAACCTTTGGAAGGAAGTTCGAATGATGATTCCTCTGATGCGCACTCAAAGCCTTCTCTTGATGGCAGTGGTGCTGCC AGCCCATTGGAATCTGACAGGGGAAGTGGAGCAACTGAATCCGCTCAATTTCCTGTACATGAAAGGTTGGATTCTGGTCTAGATGATTCTAAAAGAGCAT CTGCTGTACAAAGCTCTGACATAAATGGGACTGATATGCCTGGACAAGCTCTTCCAGGACAGCCTATTTATCCACCAGTAACAACTGCAGGAGGTGCTTT GGAAAATGCTTCTCTTCGCTCTAAGACCAAGTGGCCAGAACAATCTGAGGAGCTCTTGGGACTGATTGTTAACTCACTGAGAGCCCTAGATGGAGCTGTT CCACAAGGCTGCCCAGAGCCAAGACGAAGACCTCAGTCTGCACAAAAGATTGCTCTTGTACTGGATAAAGCTCCCAAGCATCTGCAGCCAGACCTGGTTT CTTTGATTCCCAAATTGGTTGAGCATGCAGAGCATCCATTGGCGGCTTATGCACTTCTTGAAAGACTTAAAAAGCCTGATGCAGAACCTGCACTGTGGAT ACCTGTTTTTGGTGCTCTTAGTCAACTGGAGTGTGGCAGTGATGTGTGGGAGCGTGTTTTAATTCAGTCTTTTGATCTTTTGGCTGATTCAAATGATGAG CCTCTTGCTGCTACCATAGATTTTATATTCAAGGCTGCATCCCAGTGTCAACATCTTCCGGAAGCAGTCAGATCAGTTCGCACTAGGTTAAAAAACTTGG GGGCTGATGTGTCTCCTTTTGTCCTAGATTTTTTGAGCAGAACTGTGAATAGTTGGGGAGATGTTGCTGAAACCATACTAAGAGATATTGATTGTGATGA TGCCCTTGGTGATAGCTGCTCAACATTGCCTTGTGGCCTCTTCTTGTTTGGAGAAAATGCATCGGCTGCTGAAAGGTTGCATGTGGTGGATGAGCAGACA TTCCATTTTAGATGTCATTTTTCTGACATTTATATCCTGATTGAGATGTTATCCATACCTTGCCTTGCTGTTGAGGCTTCTCAAACATTTGAGAGGGCTG TAGCTCGAGGAGCAATTATGGCTCAATCTGTAGCAATGGTCTTGGAAAGACGCCTTGCTCAGAGATTGAATTTTAATGCCAGATTTGTTAATGAAAATTT TCAGCACACAGATGCTATAATAGAGGAAGAAGCCAGTGAACAGCTGCGAGTCCAACGTGATGATTTTTCTGTTGTTCTTGGTCTTGCTGAGACACTGGCT CTTTCTAGAGACCTTTGTGTGAAGGGATTTGTTAAGATGCTGTACACAATACTATTTAAATGGTATGCCAATGAGACCTATAGAGGGAGAATGCTAAAGA GACTTGTTGATCGTGCCACCAGTACTACTGATAATAGTTGTGATGTAGATTTAGATTTGGATATATTGGCTATTTTAGTTTGTGAGGAGCAAGAAATTGT TAAACCTGTTCTGAGCATGATGCGGGAGGTTGCTGAACTTGCAAATGTTGATCGGGCAGCTCTCTGGCACCAGCTATGTGCTAGTGAAGATGAAATTATT CGTATACGTGATGAGAGGAAAGCAGAAAATTCCAATATGGCTCGGGAGAAGGCAAATCTATCTCAAAAATTGAGTGACTGTGAGGCCACTAACAATAGGC TAAAGTCTGAAATGAAGGCTGAGATGGATCGCTTCACTCGGGAAAAGAAGGAACTTTCTGAACAAATACAAGAAGTTGAGAGTCAGCTTGAATGGCTACG TTCAGAGAGAGATGATGAAATCACAAAGCTGACAGTTGAGAAAAAAGTTCTTCAAGACCGTCTTCATGATGCTGAGACACAGCTCTCCCAATTGAAGTCC CGAAAACGGGATGAATTGAAGAAAGTAGTAAAAGAGAAAAATGCTCTTGCTGAAAGGCTGAAGAGCGCTGAAGCTGCACGAAAAAGATTTGATGAAGAAC TGAAACGGTATGCTACAGAGAATGTGACAAGGGAGGAAATCCGTCAGTCATTGGAGGATGAGGTTCGGAGATTGACAAAAACAGTTGGGCAAACTGAAGG AGAGAAGAGGGAGAAGGAAGAGCAGGTTGCCAGGTGTGAAGCATATATTGATGGGATGGAATCAAAATTGCAGGCCTGCCAGCAATATATCCACACCCTT GAGGCTTCTGTTCAAGATGAAATGACCCGGCATGCCCCTCTTTACGGAGCCGGATTGGAAGCTCTATCAATGCAGGAGTTGGAGACTATATCACGTATTC ATGAGGAAGGTCTCAGGCAGATTCATGCCCTCCAACAGTGCAAGGGGAGTCCTGCCTCCAGTCCTCATGTGAGCCCCCACACCTTACCCCACAATCATGG ATTGTATCCTGCTGCTCCACCTCCAATGGCAGTTGGATTGCCTCCACTGATTCCAAATGGTGTCGGGATCCACAACAATGGACTCGTGAATGGAACAGTT GGTCCATGGTTTAACCATACATAA
AA sequence Show only first row Show all	>Potri.006G256400.1 pacid=42770425 polypeptide=Potri.006G256400.1.p locus=Potri.006G256400 ID=Potri.006G256400.1.v4.1 annot-version=v4.1 MKHSSSSTTTTATSMEAAATSSTCSSSAPIPSHSDQSSPGTSSSTAMTTTTTSTIDDITVGTTLDGTNGAAAETVTIDRRGEYSATCKWTVQSFPRVKAR ALWSKYFEVGGYDCRLLIYPKGDSQALPGYISIYLQIMDPRGTSSSKWDCFASYRLSIVNPLDDSKTIHRDSWHRFSSKKKSHGWCDFTPASTVFDSKLG YLFNNDCVLITADILILNESVSFMRDNSSSSTSNNEVQSGVSLSISSNSVAVGPVSDVLSGKCTWKVHNFSLFKEMIKTQKIMSPVFPAGECNLRISVYQ SSVNGTDYLSMCLESKDTEKTVVSDRSCWCLFRMSVLNQKAGGSNHVHRDSYGRFAADNKSGDNTSLGWNDYMKMADFIGAESGFLVDDTAVFSTSFHVI KEFSSFSKNGGLIGGRIGSGARKSDGHMGKFTWRIENFMRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVTDLRNTSSDWS CFVSHRLSVVNQRMEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVVFSAEVLILKETSIMQDFTDQDTESTNGTSQIDKVGKRSSFT WKVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQSVGSDPDKNFWVRYRMAVVNQKNPAKTVWKESSICTKTWNNSVLQFMKVSD MLETDAGFLVRDTVVFVCEILDCCPWFEFSDLEVLASEDDQDALTTDPDELIDSEDSEGNSGDEEDIFRNLLSRAGFHLTYGDNPSQPQVTLREKLLMDA GAIAGFLTGLRVYLDEPAKVKKLLLPTKLSGGNDGKKAAKADESSPSLMNLLMGVKVLQQAIIDLLLDIMVECCQPLEGSSNDDSSDAHSKPSLDGSGAA SPLESDRGSGATESAQFPVHERLDSGLDDSKRASAVQSSDINGTDMPGQALPGQPIYPPVTTAGGALENASLRSKTKWPEQSEELLGLIVNSLRALDGAV PQGCPEPRRRPQSAQKIALVLDKAPKHLQPDLVSLIPKLVEHAEHPLAAYALLERLKKPDAEPALWIPVFGALSQLECGSDVWERVLIQSFDLLADSNDE PLAATIDFIFKAASQCQHLPEAVRSVRTRLKNLGADVSPFVLDFLSRTVNSWGDVAETILRDIDCDDALGDSCSTLPCGLFLFGENASAAERLHVVDEQT FHFRCHFSDIYILIEMLSIPCLAVEASQTFERAVARGAIMAQSVAMVLERRLAQRLNFNARFVNENFQHTDAIIEEEASEQLRVQRDDFSVVLGLAETLA LSRDLCVKGFVKMLYTILFKWYANETYRGRMLKRLVDRATSTTDNSCDVDLDLDILAILVCEEQEIVKPVLSMMREVAELANVDRAALWHQLCASEDEII RIRDERKAENSNMAREKANLSQKLSDCEATNNRLKSEMKAEMDRFTREKKELSEQIQEVESQLEWLRSERDDEITKLTVEKKVLQDRLHDAETQLSQLKS RKRDELKKVVKEKNALAERLKSAEAARKRFDEELKRYATENVTREEIRQSLEDEVRRLTKTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTL EASVQDEMTRHAPLYGAGLEALSMQELETISRIHEEGLRQIHALQQCKGSPASSPHVSPHTLPHNHGLYPAAPPPMAVGLPPLIPNGVGIHNNGLVNGTV GPWFNHT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25320			TRAF-like family protein (.1)		Potri.006G256400 [exp]	0	1
AT2G29210			splicing factor PWI domain-con...		Potri.009G036900 [exp]	1.00	0.8421
AT2G25320			TRAF-like family protein (.1)		Potri.018G025600 [exp]	6.92	0.8173
AT1G65440		GTB1	global transcription factor gr...		Potri.006G031900 [exp]	7.34	0.8384
AT2G33540		CPL3, ATCPL3	C-terminal domain phosphatase-...		Potri.003G164300 [exp]	8.36	0.8171
AT3G51650			unknown protein		Potri.016G133700 [exp]	10.58	0.8171
AT1G28060			Pre-mRNA-splicing factor 3 (.1...		Potri.010G213300 [exp]	10.81	0.8072
AT3G06400		CHR11	chromatin-remodeling protein 1...		Potri.010G021400 [exp]	18.46	0.7946
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.014G000500 [exp]	18.73	0.7837	Pt-HAC1.3
AT1G04300			TRAF-like superfamily protein ...		Potri.010G075000 [exp]	22.36	0.7957
AT5G25060			RNA recognition motif (RRM)-co...		Potri.018G017200 [exp]	25.09	0.7826

Compare expression of checked genes

Potri.006G256400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.