Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25320 611 / 0 ACT-like superfamily protein (.1) AT1G76990 427 / 1e-146 ACR3 ACT domain repeat 3 (.1.2.3.4.5) AT3G01990 380 / 8e-129 ACR6 ACT domain repeat 6 (.1) AT1G69040 373 / 9e-126 ACR4 ACT domain repeat 4 (.1.2) AT2G03730 369 / 8e-124 ACR5 ACT domain repeat 5 (.1.2) AT5G65890 352 / 7e-117 ACR1 ACT domain repeat 1 (.1.2) AT4G22780 349 / 2e-116 ACR7 ACT domain repeat 7 (.1) AT1G12420 346 / 2e-115 ACR8 ACT domain repeat 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G025500 [exp] 806 / 0 AT5G25320 604 / 0.0 ACT-like superfamily protein (.1) Potri.002G074800 [exp] 449 / 1e-155 AT1G76990 676 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Potri.005G185600 [exp] 447 / 1e-154 AT1G76990 709 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Potri.007G006500 [exp] 411 / 5e-140 AT5G65890 567 / 0.0 ACT domain repeat 1 (.1.2) Potri.001G060100 [exp] 403 / 2e-137 AT1G69040 505 / 7e-178 ACT domain repeat 4 (.1.2) Potri.003G167800 [exp] 402 / 3e-137 AT1G69040 486 / 1e-170 ACT domain repeat 4 (.1.2) Potri.014G006700 [exp] 395 / 1e-133 AT5G65890 540 / 0.0 ACT domain repeat 1 (.1.2) Potri.001G327000 [exp] 388 / 1e-131 AT3G01990 630 / 0.0 ACT domain repeat 6 (.1) Potri.010G138600 [exp] 377 / 2e-127 AT1G69040 743 / 0.0 ACT domain repeat 4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028646 [exp] 432 / 1e-148 AT1G76990 699 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Lus10018943 [exp] 431 / 1e-145 AT1G76990 686 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Lus10003136 [exp] 419 / 2e-143 AT1G69040 520 / 0.0 ACT domain repeat 4 (.1.2) Lus10011329 [exp] 415 / 5e-142 AT1G69040 515 / 0.0 ACT domain repeat 4 (.1.2) Lus10011715 [exp] 390 / 1e-131 AT5G65890 520 / 0.0 ACT domain repeat 1 (.1.2) Lus10041543 [exp] 376 / 6e-127 AT3G01990 605 / 0.0 ACT domain repeat 6 (.1) Lus10012550 [exp] 373 / 1e-125 AT3G01990 612 / 0.0 ACT domain repeat 6 (.1) Lus10036827 [exp] 360 / 6e-121 AT1G69040 702 / 0.0 ACT domain repeat 4 (.1.2) Lus10019191 [exp] 221 / 1e-68 AT1G69040 434 / 2e-152 ACT domain repeat 4 (.1.2) Lus10006662 [exp] 204 / 4e-61 AT4G22780 483 / 4e-170 ACT domain repeat 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [poplar] [flax] ACT PF01842 [poplar] [flax] ACT ACT domain
Representative CDS sequence Show only first row Show all	>Potri.006G256500.1 pacid=42768901 polypeptide=Potri.006G256500.1.p locus=Potri.006G256500 ID=Potri.006G256500.1.v4.1 annot-version=v4.1 ATGAAGAATGTTTGTTGGCCTTACTTTGATCCTGATTTTGATAATCTGTCTGAGAGGATCTACGGGCCCACCTGTAGAGTTTGTATTGACAATGAAAGCA TGGAAGATTGCACGGTAGTGAAGGTGGATAGCGTAAATAAGCAGGGCCTCCTCCTGGAGGTTGTGCAAGTTATGACAGATTTGAATCTCTTCATCTCAAA AAGCTATATTTCCTCTGATGCCGAGTGGTTCATGGATGTTTTTCATGTACAAGATGAGCAAGGCAAGAAACTTAGAGATCAAAATGTTATTAACTGTATC CAGCAGGCTATAGGAACAACAAGGGAGAGTACCCCAAGTCCCCCTAAAGCAAGAGCATATACCAACAATGTTTCCAAAGCCGACCATTCAAACGAGCATA CGGCCATTGAAATGTCAGGAACCGATAGGCCTGGACTCTTCTCCGAGATATCAGCTACCTTGGCAGATCTTCATTGCAACATTGTGGAAGCCCATGCTTG GAGCCACAATGCTTGCTTAGCTTGTGTCGCGTACATTTCCGATCAATCCTCTCACACCCCAATCGAAGACCCCCACCGCTTAGCCTCCATCGAGGATCAT CTAATCACAGTGCTCCGTGCCAATATGGAGACAAGCATTAGTACTGGACCATTCCAAATCAAGAATCGAGAAGTGAAAACCAGGGGATTTCTTGGAGGGG AAGGCACCATGACCAACGTAGAAAGGAGGTTGCATCAACTCATGCTTTCGGTAAGGGATTTTGATGGGCCTAGAAGCTCATCCGAAATGAATATCACCGA AAGAGGGACGAAGATGGCTGTTTCGATCGAGAATTGTGACCAAAAAGGGTATTCAATTGTTAGCATAGAGTGCAAGGATCGGCCAAGGCTCATGTTCGAT ATCGTATGCACACTAACTGACATGCAATATGTGATTTTCCATGCTTCAGTTGCCTCTCATGATGGCCGTGCATTTCAAGAATACTTTATTCGACATGACG ATGGATATCCACTTAACACAGAAAGTGAGAAACAACGGGTAATAAAATGCCTAGAGGCTGCCATAGAGCGTCGGGTTTGTGAGGGTGTTTGGCTGAAGTT ATGCGCAGAAAATAGAGTAGGGCTACTATCGGACATAACTAGGGTTCTCCGAGAAAACGGACTTGCGGTCGTTCGAGCAGATATAGCAACAAAAGGAAAG AACGCAGTGAACGCTTTCTATGTAAGAGACGTCTCAGGGAATGAAGTTGATATGGGATTCATCAAGTCAATGAAGAAAGAAATGGGTCTAATTGATCTTG AAGTCAAGAATGATAACAAAACGAGAAGAACAAATATTAGCTCACATGAAAGGCATCATTTCTCTCTTGGAGACTTGCTCAAATCTCAACTTGAACGATT TTCTCACAACTTTATTGCAATAAATTAA
AA sequence Show only first row Show all	>Potri.006G256500.1 pacid=42768901 polypeptide=Potri.006G256500.1.p locus=Potri.006G256500 ID=Potri.006G256500.1.v4.1 annot-version=v4.1 MKNVCWPYFDPDFDNLSERIYGPTCRVCIDNESMEDCTVVKVDSVNKQGLLLEVVQVMTDLNLFISKSYISSDAEWFMDVFHVQDEQGKKLRDQNVINCI QQAIGTTRESTPSPPKARAYTNNVSKADHSNEHTAIEMSGTDRPGLFSEISATLADLHCNIVEAHAWSHNACLACVAYISDQSSHTPIEDPHRLASIEDH LITVLRANMETSISTGPFQIKNREVKTRGFLGGEGTMTNVERRLHQLMLSVRDFDGPRSSSEMNITERGTKMAVSIENCDQKGYSIVSIECKDRPRLMFD IVCTLTDMQYVIFHASVASHDGRAFQEYFIRHDDGYPLNTESEKQRVIKCLEAAIERRVCEGVWLKLCAENRVGLLSDITRVLRENGLAVVRADIATKGK NAVNAFYVRDVSGNEVDMGFIKSMKKEMGLIDLEVKNDNKTRRTNISSHERHHFSLGDLLKSQLERFSHNFIAIN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25320			ACT-like superfamily protein (...		Potri.006G256500 [exp]	0	1
AT1G47990		ATGA2OX4	Arabidopsis thaliana gibberell...		Potri.010G149700 [exp]	8.00	0.7268	GA2ox5,Pt-GA2.3
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G019700 [exp]	24.81	0.6830
					Potri.018G088701 [exp]	27.71	0.7233
AT1G53440			Leucine-rich repeat transmembr...		Potri.016G092700 [exp]	31.85	0.7176
AT4G08850			Leucine-rich repeat receptor-l...		Potri.015G124100 [exp]	37.68	0.6895
					Potri.003G153266 [exp]	56.83	0.6980
AT5G61520			Major facilitator superfamily ...		Potri.016G120700 [exp]	83.94	0.6726
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G020300 [exp]	86.83	0.6354
AT4G15093			catalytic LigB subunit of arom...		Potri.018G136303 [exp]	87.57	0.6096
					Potri.003G153332 [exp]	89.83	0.6680

Compare expression of checked genes

Potri.006G256500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.