Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28690 162 / 1e-48 Protein of unknown function (DUF1635) (.1) AT5G59760 83 / 1e-18 Protein of unknown function (DUF1635) (.1) AT5G22930 63 / 2e-11 Protein of unknown function (DUF1635) (.1) AT3G44940 62 / 6e-11 Protein of unknown function (DUF1635) (.1) AT2G28140 43 / 0.0001 Protein of unknown function (DUF1635) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G027100 [exp] 396 / 2e-139 AT2G28690 156 / 3e-46 Protein of unknown function (DUF1635) (.1) Potri.001G235200 [exp] 378 / 2e-132 AT2G28690 166 / 3e-50 Protein of unknown function (DUF1635) (.1) Potri.018G024900 [exp] 325 / 7e-112 AT2G28690 121 / 4e-33 Protein of unknown function (DUF1635) (.1) Potri.008G010100 [exp] 174 / 2e-52 AT2G28690 147 / 4e-43 Protein of unknown function (DUF1635) (.1) Potri.009G006000 [exp] 72 / 2e-14 AT5G22930 134 / 3e-38 Protein of unknown function (DUF1635) (.1) Potri.004G216100 [exp] 66 / 2e-12 AT5G22930 140 / 8e-41 Protein of unknown function (DUF1635) (.1) Potri.010G229200 [exp] 47 / 7e-06 AT5G22930 77 / 2e-16 Protein of unknown function (DUF1635) (.1) Potri.008G032500 [exp] 46 / 1e-05 AT5G22930 75 / 5e-16 Protein of unknown function (DUF1635) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005884 [exp] 145 / 1e-41 AT2G28690 185 / 2e-58 Protein of unknown function (DUF1635) (.1) Lus10040864 [exp] 139 / 1e-39 AT2G28690 197 / 2e-63 Protein of unknown function (DUF1635) (.1) Lus10016148 [exp] 46 / 6e-06 AT5G22930 104 / 4e-28 Protein of unknown function (DUF1635) (.1) Lus10021419 [exp] 46 / 8e-06 AT5G22930 182 / 6e-58 Protein of unknown function (DUF1635) (.1) Lus10037944 [exp] 46 / 1e-05 AT5G22930 131 / 3e-37 Protein of unknown function (DUF1635) (.1) Lus10038677 [exp] 45 / 4e-05 AT5G22930 121 / 2e-33 Protein of unknown function (DUF1635) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07795 [poplar] [flax] DUF1635 Protein of unknown function (DUF1635)
Representative CDS sequence Show only first row Show all	>Potri.006G256801.1 pacid=42768589 polypeptide=Potri.006G256801.1.p locus=Potri.006G256801 ID=Potri.006G256801.1.v4.1 annot-version=v4.1 ATGGAGTTGGGTTCCATGTGGGATTATGAAGAGACCATTGATGAATTGAAGCAGAAGCTTGTGTACAGCACCATTGAATTAGAGTCACTGAAAGTTGAAG CAAATGAAGAACTGAGAAAGCACAAGGAGGATGTGGGGCGATTAATCAACATGCTAAAGGTTGCTTCTCAAGAAAGAGATGAGGCAAAAGGGCAACTGCA AAATCTACTTAACAAGCTTATCCTTTCTAATCCGACTGAATTACTTCCCTTTCTCCCTCAAGCACAATCAGGGAACCCTCTTGTAATTCCTGCTAGAGGG AACTCGAGCATTACTGAATCTAACAGTCTATCTGATACACATAATCACCAATCACATGGCTCCTCTCCAGTGGATTCCTTCTTTGATGCAATTGCTTCAC CAGATTTCTGTAGCACTAACATGGAAGAATCAAGTCACATGGGGTTTGTGAGCAATACATTTGTTAAAGAGTATAATAAAGGCTCCATATCAGCAGGTTT AGAGGTTCCAGCAGTGCCCAGGATCAATCCGGCCGATGCTGTAATCGAAAACTTTGTGAAAGGAAAAGTGCTGCCTGAAGAAGGAAACCTGTTGCAGGCT GTAATGGAAACAGGCCCTCTTCTTCAAACACTACTTCTTGCAGGCCCGCTTCCACGGTGGAGAAATCCTCCTCCATTGCAACCGTTCAAGATTCTACCTG TTTCCACCAGTAGTCAGAATGCAGCTGCAAATGCAAGCTTTCTTGCTCAAAAACCGTTGGCTTCACCATCTTATATTGAGTTGCGTCGTGGATCTTCTAA AACATGCTCTTCCATGTTAAATTTCTCTAGTGGTGCTTCTGGTTCAGGTCTAGACAATGGATGCCTGTTAAATTCTGGTGCTATCCATCAAATCCCCGCA GGAAAGCGGCAGAGGTTTTAG
AA sequence Show only first row Show all	>Potri.006G256801.1 pacid=42768589 polypeptide=Potri.006G256801.1.p locus=Potri.006G256801 ID=Potri.006G256801.1.v4.1 annot-version=v4.1 MELGSMWDYEETIDELKQKLVYSTIELESLKVEANEELRKHKEDVGRLINMLKVASQERDEAKGQLQNLLNKLILSNPTELLPFLPQAQSGNPLVIPARG NSSITESNSLSDTHNHQSHGSSPVDSFFDAIASPDFCSTNMEESSHMGFVSNTFVKEYNKGSISAGLEVPAVPRINPADAVIENFVKGKVLPEEGNLLQA VMETGPLLQTLLLAGPLPRWRNPPPLQPFKILPVSTSSQNAAANASFLAQKPLASPSYIELRRGSSKTCSSMLNFSSGASGSGLDNGCLLNSGAIHQIPA GKRQRF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28690			Protein of unknown function (D...		Potri.006G256801 [exp]	0	1
AT1G23880			NHL domain-containing protein ...		Potri.009G072933 [exp]	35.07	0.7334
AT3G21690			MATE efflux family protein (.1...		Potri.014G153100 [exp]	44.01	0.8106
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.018G133901 [exp]	54.40	0.8033
AT4G28670			Protein kinase family protein ...		Potri.007G056000 [exp]	58.52	0.7993
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.006G061250 [exp]	60.44	0.8023
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.003G057250 [exp]	61.48	0.7825
AT1G75990			PAM domain (PCI/PINT associate...		Potri.002G017800 [exp]	64.66	0.7470
AT5G20240	MADS	PI, PISTILLATA	PISTILLATA, K-box region and M...		Potri.005G182200 [exp]	98.79	0.7475	Pt-MADS2.2
AT1G78950		ATLUP3	Terpenoid cyclases family prot...		Potri.019G079150 [exp]	155.59	0.7436
AT4G33590			unknown protein		Potri.007G112500 [exp]	203.07	0.7216

Compare expression of checked genes

Potri.006G256801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.