Plant FIBer expression Database

Potri.006G257000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G32140 566 / 0 EamA-like transporter family (.1)
AT3G07080 91 / 8e-20 EamA-like transporter family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G024700
[exp]
686 / 0 AT4G32140 581 / 0.0 EamA-like transporter family (.1)
Potri.006G266400
[exp]
402 / 6e-139 AT4G32140 397 / 6e-137 EamA-like transporter family (.1)
Potri.014G189500
[exp]
107 / 2e-25 AT3G07080 477 / 2e-167 EamA-like transporter family (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006194
[exp]
587 / 0 AT4G32140 610 / 0.0 EamA-like transporter family (.1)
Lus10041032
[exp]
569 / 0 AT4G32140 607 / 0.0 EamA-like transporter family (.1)
Lus10042422
[exp]
356 / 3e-117 AT4G32140 390 / 3e-130 EamA-like transporter family (.1)
Lus10026249
[exp]
288 / 8e-95 AT4G32140 320 / 3e-107 EamA-like transporter family (.1)
Lus10011864
[exp]
97 / 9e-22 AT3G07080 453 / 1e-158 EamA-like transporter family (.1)
Lus10022798
[exp]
58 / 5e-09 AT3G07080 342 / 5e-116 EamA-like transporter family (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0184 DMT PF00892 EamA EamA-like transporter family
Representative CDS sequence
>Potri.006G257000.1 pacid=42769598 polypeptide=Potri.006G257000.1.p locus=Potri.006G257000 ID=Potri.006G257000.1.v4.1 annot-version=v4.1
ATGGGTTGGAGATATAGAGCTGGTTTGTTCTTGATAGCCGCTGTTGTTATTATATGGGTCACCTCTGCGGAAGTTACCCAGGATATCTTTGCCGATTATA
AGCAGCCATTTGCAGTGACATATCTTGGAGCTTCTCTTTTGGTGGTTTACCTCCCAGTGGCATTCCTTAAAGATTGGACACGTAATCTGCTAAAGCGACA
GTCTTCTAAAAGTGGTAATGATGCAACCAATGTAAATGGGTCTTCTGATGAATTAAGCTCTCCTCTGAGTCGCAAAATCTTTGAAATGGAACTTCAGGGA
ACTTTGACTAAAAAAGACAGTGAATTGGACCTTGCATCTTCAGAAGAGGGAAAGCCATTAGTTTCTAGACACAAGGATGATTTGAATGTTCTTATACATG
ACAAAGAGCCCACAATCAGAGAAATTGCTATGTGTGGTTTTTATATTGCCCCTATCTGGTTTGTAACTGAGTACCTATCAAATGCTGCACTAGCACGGAC
GAGTGTTGCAAGTACAACAGTTTTGTCATCAACTTCTGGACTTTTTACTCTTTTCATCGGTGTGTTTTTGGGTCAAGATTCTTTAAATGCAGCAAAGGTG
ATAGCTGTCCTGGTGAGCATGGCTGGTGTTGCCATGACTACTTTGGGAAAAACATGGGCTGCAGATGAGTCACCACTAAGTGCTTCCACCAACGGCAAAC
GCTCGCTTGTTGGGGATCTTTTTGGTCTTCTATCAGCCGTGTCATACGGACTATTTACAGTGCTTCTTAAAAAGTTTGCTGGAGAAGGAGAAAGGGTTGA
TGTGCAAAAGTTGTTCGGATATATAGGATTGTTTACACTAGTAGCTCTGTGGTGGCTTGTTTGGCCTTTGACAGCCTTGGGAATTGAACCCAAGTTTACA
ATCCCTCACTCTGCTAAAGTGGATGAAATTGTTCTTGCCAATGGCTTTGTTGGAAGTGTCCTCTCTGACTACTTTTGGGCATTATCTGTTGTATGGACAA
CTCCATTGGTGGCCACCTTGGGCATGTCCCTCACCATCCCTCTTGCTATGCTAGCTGACATGGTGATTCATGGCCGTCATTATTCAGCAATTTACATTCT
TGGTTCTGCTCAGGTGTTCGCAGGTTTCATGATAGCTAATCTTTCGAATTGGTTCTCAAAGAAGTTAGGGTTATAG
AA sequence
>Potri.006G257000.1 pacid=42769598 polypeptide=Potri.006G257000.1.p locus=Potri.006G257000 ID=Potri.006G257000.1.v4.1 annot-version=v4.1
MGWRYRAGLFLIAAVVIIWVTSAEVTQDIFADYKQPFAVTYLGASLLVVYLPVAFLKDWTRNLLKRQSSKSGNDATNVNGSSDELSSPLSRKIFEMELQG
TLTKKDSELDLASSEEGKPLVSRHKDDLNVLIHDKEPTIREIAMCGFYIAPIWFVTEYLSNAALARTSVASTTVLSSTSGLFTLFIGVFLGQDSLNAAKV
IAVLVSMAGVAMTTLGKTWAADESPLSASTNGKRSLVGDLFGLLSAVSYGLFTVLLKKFAGEGERVDVQKLFGYIGLFTLVALWWLVWPLTALGIEPKFT
IPHSAKVDEIVLANGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMLADMVIHGRHYSAIYILGSAQVFAGFMIANLSNWFSKKLGL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G32140 EamA-like transporter family (... Potri.006G257000
[exp]
0 1
AT5G12470 Protein of unknown function (D... Potri.009G051800
[exp]
2.64 0.7487
AT3G62830 ATUXS2, UXS2, A... UDP-GLUCURONIC ACID DECARBOXYL... Potri.014G129200
[exp]
4.24 0.6791 UXS2.2
AT2G43070 ATSPPL3 ARABIDOPSIS THALIANA SIGNAL PE... Potri.014G150000
[exp]
15.49 0.6336
AT5G42620 metalloendopeptidases;zinc ion... Potri.014G040800
[exp]
22.22 0.6454
AT5G14670 ATARFA1B ADP-ribosylation factor A1B (.... Potri.013G005500
[exp]
27.33 0.6703
AT1G28520 VOZ ATVOZ1, VOZ1 vascular plant one zinc finger... Potri.019G092800
[exp]
28.00 0.6440
AT3G52990 Pyruvate kinase family protein... Potri.010G233200
[exp]
33.13 0.6377
AT3G02700 NC domain-containing protein-r... Potri.004G078700
[exp]
33.31 0.6497
AT5G10020 Leucine-rich receptor-like pro... Potri.007G082800
[exp]
43.87 0.6479
AT1G16300 GAPCP-2 glyceraldehyde-3-phosphate deh... Potri.010G172400
[exp]
44.49 0.5912

Potri.006G257000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.