Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32120 556 / 0 Galactosyltransferase family protein (.1) AT2G25300 540 / 0 Galactosyltransferase family protein (.1) AT5G53340 314 / 5e-106 Galactosyltransferase family protein (.1.2) AT1G05170 241 / 2e-76 Galactosyltransferase family protein (.1.2) AT2G32430 224 / 4e-70 Galactosyltransferase family protein (.1) AT1G77810 223 / 8e-70 Galactosyltransferase family protein (.1.2) AT1G11730 221 / 3e-69 Galactosyltransferase family protein (.1) AT1G32930 218 / 7e-68 Galactosyltransferase family protein (.1) AT1G33430 213 / 4e-66 Galactosyltransferase family protein (.1.2) AT4G26940 206 / 4e-63 Galactosyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G024500 [exp] 652 / 0 AT4G32120 538 / 0.0 Galactosyltransferase family protein (.1) Potri.003G136000 [exp] 345 / 4e-118 AT5G53340 484 / 3e-173 Galactosyltransferase family protein (.1.2) Potri.015G023700 [exp] 324 / 5e-110 AT5G53340 521 / 0.0 Galactosyltransferase family protein (.1.2) Potri.014G153700 [exp] 235 / 3e-74 AT1G05170 699 / 0.0 Galactosyltransferase family protein (.1.2) Potri.004G013900 [exp] 231 / 6e-73 AT1G05170 547 / 0.0 Galactosyltransferase family protein (.1.2) Potri.011G004200 [exp] 230 / 9e-73 AT1G05170 520 / 0.0 Galactosyltransferase family protein (.1.2) Potri.002G228900 [exp] 227 / 3e-71 AT1G05170 673 / 0.0 Galactosyltransferase family protein (.1.2) Potri.002G089800 [exp] 224 / 2e-70 AT1G77810 611 / 0.0 Galactosyltransferase family protein (.1.2) Potri.005G171400 [exp] 224 / 2e-70 AT1G77810 594 / 0.0 Galactosyltransferase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001920 [exp] 538 / 0 AT4G32120 541 / 0.0 Galactosyltransferase family protein (.1) Lus10001954 [exp] 478 / 2e-167 AT4G32120 489 / 8e-172 Galactosyltransferase family protein (.1) Lus10014945 [exp] 319 / 7e-108 AT5G53340 469 / 4e-167 Galactosyltransferase family protein (.1.2) Lus10032350 [exp] 308 / 2e-103 AT5G53340 419 / 5e-147 Galactosyltransferase family protein (.1.2) Lus10033935 [exp] 300 / 1e-100 AT5G53340 415 / 6e-146 Galactosyltransferase family protein (.1.2) Lus10038830 [exp] 278 / 1e-91 AT5G53340 421 / 4e-148 Galactosyltransferase family protein (.1.2) Lus10040062 [exp] 228 / 1e-71 AT1G05170 647 / 0.0 Galactosyltransferase family protein (.1.2) Lus10006933 [exp] 225 / 2e-70 AT1G77810 602 / 0.0 Galactosyltransferase family protein (.1.2) Lus10031567 [exp] 224 / 4e-70 AT1G05170 633 / 0.0 Galactosyltransferase family protein (.1.2) Lus10024750 [exp] 223 / 9e-70 AT1G77810 599 / 0.0 Galactosyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01762 [poplar] [flax] Galactosyl_T Galactosyltransferase CL0110 [poplar] [flax] PF13334 [poplar] [flax] DUF4094 Domain of unknown function (DUF4094)
Representative CDS sequence Show only first row Show all	>Potri.006G257200.2 pacid=42768424 polypeptide=Potri.006G257200.2.p locus=Potri.006G257200 ID=Potri.006G257200.2.v4.1 annot-version=v4.1 ATGGAGAGCAGTATACCAGTGTCGGCCAAATCAGAGCGAAGATGGAGATCGAAGCCGTTACAGACCTCTAAACCATCTCTTGTTCTAGCCTTCTTCTCTT GTTTCGCTTGGCTCTACGTTGCTGGACGTTTATGGCAAGATGCAGAGAACAGAACATTACTTTCTAATCTTCTAAAGAGAAATACAGCTCAGAGACCAAA ATTTCTTACAGTTGAAGATAAGCTGGTCGTACTAGGATGCAAGGATTTAGAGAGGAGGATAGTGGAGGCAGAAATGGAATTGACTTTGGCTAAGAGTCGA GGGTATTTAAAAAACCGGTTGCCGGAAAATGGGTCTTCATCCGGTAAAAAGTTTCTTGCAGTTATTGGTGTTTATACGGGATTTGGTAGTCACTTGAAGC GGAAGGTGTTTAGAGGGTCTTGGATGCCTAGAGGAGATGCCTTAAAAAAACTTGAGGAAAGAGGAGTAGTGATACGTTTTGTGATTGGTCGCAGTGCTAA TCGAGGGGATAGCTTAGATCGAAATATCGACGGTGAAAATCGTTCAACAAAGGATTTCTTGATTCTTGAAGGTCATGAGGAGGCTCAAGAAGAATTGCCC AAGAAAGTGAAGTACTTCTTTAGCACTGCGGTGCAAACATGGGATGCGGAATTTTATGTAAAAGTTGATGACAATATCAACCTTGATCTTGAGGGGCTAA TTGAACTTCTTGAACACCGTCGCAGACAAGATAGTGCTTACATTGGCTGTATGAAGTCTGGAGAAGTTGTAACTGAAGAGGGTAAGCCATGGTATGAGCC TGAATGGTGGAAATTTGGAGATGAAAAATCGTACTTTCGACATGCATCTGGTTCCCTTGTTATACTCTCCAAAAATTTGGCTCGGTATATTGACATAAAC AGTGCATCTCTTAGGAGTTACGCTCATGACGATATCTCAGTGGGATCTTGGATGATGGGTGTCCAAGCAACCTATATAGACGACAACCGTCTTTGCTGCA GTAGCATTAAACAAGACAAGGTTTGTTCCCTGGCTTGA
AA sequence Show only first row Show all	>Potri.006G257200.2 pacid=42768424 polypeptide=Potri.006G257200.2.p locus=Potri.006G257200 ID=Potri.006G257200.2.v4.1 annot-version=v4.1 MESSIPVSAKSERRWRSKPLQTSKPSLVLAFFSCFAWLYVAGRLWQDAENRTLLSNLLKRNTAQRPKFLTVEDKLVVLGCKDLERRIVEAEMELTLAKSR GYLKNRLPENGSSSGKKFLAVIGVYTGFGSHLKRKVFRGSWMPRGDALKKLEERGVVIRFVIGRSANRGDSLDRNIDGENRSTKDFLILEGHEEAQEELP KKVKYFFSTAVQTWDAEFYVKVDDNINLDLEGLIELLEHRRRQDSAYIGCMKSGEVVTEEGKPWYEPEWWKFGDEKSYFRHASGSLVILSKNLARYIDIN SASLRSYAHDDISVGSWMMGVQATYIDDNRLCCSSIKQDKVCSLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32120			Galactosyltransferase family p...		Potri.006G257200 [exp]	0	1
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Potri.006G214000 [exp]	1.41	0.9462
AT1G68390			Core-2/I-branching beta-1,6-N-...		Potri.010G121800 [exp]	1.73	0.9326
AT2G15240			UNC-50 family protein (.1)		Potri.009G095900 [exp]	4.24	0.9332
AT1G50120			unknown protein		Potri.007G071000 [exp]	10.19	0.9290
AT2G38580			Mitochondrial ATP synthase D c...		Potri.016G139000 [exp]	12.84	0.9030
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Potri.016G080500 [exp]	14.42	0.9127
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Potri.001G142100 [exp]	15.65	0.9288	UBP20.2
AT4G01400			unknown protein		Potri.002G179600 [exp]	17.49	0.9114
AT5G01010			unknown protein		Potri.016G143700 [exp]	19.59	0.9068
AT3G22290			Endoplasmic reticulum vesicle ...		Potri.006G023900 [exp]	19.79	0.9134

Compare expression of checked genes

Potri.006G257200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.