Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38690 270 / 3e-81 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) AT1G67270 233 / 5e-68 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) AT1G67780 226 / 8e-66 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) AT2G23530 107 / 5e-24 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) AT4G37110 101 / 1e-22 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) AT1G09060 52 / 2e-06 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G024400 [exp] 927 / 0 AT5G38690 271 / 1e-81 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) Potri.007G036200 [exp] 107 / 3e-24 AT2G23530 320 / 6e-102 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Potri.009G108400 [exp] 102 / 4e-23 AT2G23530 253 / 8e-79 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Potri.012G044400 [exp] 79 / 9e-16 AT4G37110 96 / 2e-22 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Potri.013G019000 [exp] 46 / 8e-05 AT1G09060 996 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.004G006200 [exp] 44 / 0.0003 AT1G11950 870 / 0.0 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.015G012800 [exp] 43 / 0.001 AT4G00990 508 / 4e-157 Transcription factor jumonji (jmjC) domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017575 [exp] 276 / 2e-83 AT5G38690 409 / 8e-137 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) Lus10033539 [exp] 269 / 1e-80 AT5G38690 405 / 2e-134 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) Lus10000845 [exp] 111 / 6e-26 AT2G23530 303 / 8e-98 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Lus10019647 [exp] 111 / 7e-26 AT2G23530 301 / 5e-97 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Lus10023846 [exp] 101 / 3e-23 AT2G23530 272 / 2e-87 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Lus10021004 [exp] 66 / 2e-12 AT4G37110 110 / 7e-29 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Lus10015260 [exp] 44 / 0.0004 AT3G07610 627 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10037812 [exp] 44 / 0.0004 AT1G09060 957 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Lus10017092 [exp] 44 / 0.0005 AT1G09060 962 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02791 [poplar] [flax] DDT DDT domain PF10497 [poplar] [flax] zf-4CXXC_R1 Zinc-finger domain of monoamine-oxidase A repressor R1
Representative CDS sequence Show only first row Show all	>Potri.006G257400.1 pacid=42767908 polypeptide=Potri.006G257400.1.p locus=Potri.006G257400 ID=Potri.006G257400.1.v4.1 annot-version=v4.1 ATGAAAAGTCATCAAACTGACAAAGAAACAGAAGAAAGACGAAGAAACCCTCAAAAAGAGAATAGTTTTGCAGCTATGGCAGTCACTTCAAGTCCTGCTG ATTCGAATGGAAAAGAAGTTGTAGAGAAGAGTCAGGCAAAGTGTCCGGGAGTTCGTGTTGTTGGAGGGAGGATCTATGATTCTCAAAACGGGAAGACCTG CCATCAATGCCGACAAAAAACAATGGATTTCATTGCCGCATGTACTGCTCAGAAAGGAAATAAACTATGTACTCTCAAGTTCTGCCACAAATGCCTATTG AACAGATACGGAGAGAAAGCAGAAGAGGTAGCTTTGTTGGATGACTGGCAGTGTCCCAAGTGTAGGGGCATTTGCAACTGTAGCTTCTGCATGAAGAGAC GAGGTCACAAACCCACTGGCATACTTGTTCGTACAGCCAAGGAAAATGGGTTCTCCTCTGTCTCAGAACTGCTGCAGGTTAAAGGTCCTGAAAACTTGAA CCACTACAAGGATGTAAAAGACAACAATGTTTCACCAAAGAAGAGTGCATTGTCAGAGGAGGAGTCTACAGTTACTTCGCCACGGAAATCAGGGAATGAA GATTCTTTTGAAGAAAACATTGATATGAATTTGCATTCTCAGAATTTAACACCCATCTCTTTTGGGAAGAAATCTAAGAAAACAAAAAGGAAAGGACCAG AGGAAGTCAGTGATGGCAACATGGATGCTGAAACTAGGTTAAAGGAGAGTGGTCAGAAGAAATCGAAAAAGGAAGGGGCTGAGGAAGTTAGTAATGGTGG CAGGAATGGTGAAGCTAGTTCAAAGGCTAGAATTACTGCAGAGGTTTCTGAAAACAAAGCGAAGACCAATGAAAAGGATAAATGTGATGTTGTCAAGGAC AAGAATGAAGATGCTTTTGTGGAGAAAAAGAGGTCGAAGACACAGCCTCAAGAGTTTTCCAAGAATGAAGTTTTACTCGGTACAAATTATTATGGTGGTA TAGTTTGTGGTGTTAGAAATGATAAAATTCGAACCGAGACCAAGAAGGATGGAGACTCATGCAAAGTTAACAAGTTTCCTTCAGAATTTCAAACCAAATC AAAGACAGCCAAAGAGAGGCGGCTTACCACAGAAATTCAGAACAAAGAAATTGACGTGGACATTAAGTTACCTCAGGGAACCTGCTTAATGGCTGTAGCA GGCTTTGAGTTGCCTCCTGAAGATGTCGGTAATGCATTGCAATTCTTGGAGTTTTGTGCTAGTTTTGGTAAGGTTCTTGGTCTGAAGAAAGGGCAAGCTG ATACTATACTTGGAGAAATTGTAAATGGTCATAGAGAGCGTCGGTCGCAATCCTATCACCTAGCCCAGATTCATGTTCAGTTACTATCAGTGATACAAAA GGATATAGGAGAAGAATCTCCCACCCTAACTGCAACAAATGACAACTCATGGTTTAAAGCTCTCGGGAAATGTGTCTCGAAATGCCTTTTCATATCGAAA GAAATTCTCTCTGGCAGTTTTGACCTGGACAATGAAGGATATGATAACTTAAAGAGCTCTGAAAAGCTTAGACTCTTGAATTTTCTATGTGATGAAGCTC TTAATACCAAAGAGTTGAGGAGTTGGATTGATGATGAAAACTCCAAATTTCTTGAAAGAAAGAAGGGAGCCAAAGAAAAAGTTTATGCAGCAAAGGAAAA GGAAAAAAACTTGAAAAAGAAGATGCAAGATGAGGTGGCCAAAGCTATTATTGAGAAAAACGGTGCTCCCAATTCTGTTTCTAATCATAAAGAACTAGTC TCACAAATAAAAAGTGAAGCCGCACAAGCTCATGCAGAAATGCTTGAGGCCACGGGCATGGCACAAAAGAAGAGACTATCCAATGCTGTAAGAACAGACC CTGTCCTTCTGGATGTTGATGGCCGTGCTTTCTGGAAACTAAATGGTCATGATGGTCAATCAGCTATTTTGCTTCAAGATATGGGTGCATGGAATTCTGT TGCACCCAGTGAAAAATGGGTAGCATATGCTGATGAACAGAAAATGGACATTGAGAAATACATCTCTTTCTCGAGGACAAAATTGCGTAGGGTTCAACAA AAAGCTATTGAAACTCCTTCAATTGAAATTGATACTGAAACCTCTTCAATTGATATTTGA
AA sequence Show only first row Show all	>Potri.006G257400.1 pacid=42767908 polypeptide=Potri.006G257400.1.p locus=Potri.006G257400 ID=Potri.006G257400.1.v4.1 annot-version=v4.1 MKSHQTDKETEERRRNPQKENSFAAMAVTSSPADSNGKEVVEKSQAKCPGVRVVGGRIYDSQNGKTCHQCRQKTMDFIAACTAQKGNKLCTLKFCHKCLL NRYGEKAEEVALLDDWQCPKCRGICNCSFCMKRRGHKPTGILVRTAKENGFSSVSELLQVKGPENLNHYKDVKDNNVSPKKSALSEEESTVTSPRKSGNE DSFEENIDMNLHSQNLTPISFGKKSKKTKRKGPEEVSDGNMDAETRLKESGQKKSKKEGAEEVSNGGRNGEASSKARITAEVSENKAKTNEKDKCDVVKD KNEDAFVEKKRSKTQPQEFSKNEVLLGTNYYGGIVCGVRNDKIRTETKKDGDSCKVNKFPSEFQTKSKTAKERRLTTEIQNKEIDVDIKLPQGTCLMAVA GFELPPEDVGNALQFLEFCASFGKVLGLKKGQADTILGEIVNGHRERRSQSYHLAQIHVQLLSVIQKDIGEESPTLTATNDNSWFKALGKCVSKCLFISK EILSGSFDLDNEGYDNLKSSEKLRLLNFLCDEALNTKELRSWIDDENSKFLERKKGAKEKVYAAKEKEKNLKKKMQDEVAKAIIEKNGAPNSVSNHKELV SQIKSEAAQAHAEMLEATGMAQKKRLSNAVRTDPVLLDVDGRAFWKLNGHDGQSAILLQDMGAWNSVAPSEKWVAYADEQKMDIEKYISFSRTKLRRVQQ KAIETPSIEIDTETSSIDI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38690			Zinc-finger domain of monoamin...		Potri.006G257400 [exp]	0	1
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Potri.003G005700 [exp]	1.73	0.8005
AT5G04670			Enhancer of polycomb-like tran...		Potri.008G024300 [exp]	4.79	0.8316
AT5G56290		EMB2790, PEX5, ...	EMBRYO DEFECTIVE 2790, ARABIDO...		Potri.011G170000 [exp]	8.83	0.8229	Pt-PEX5.1
AT1G02880		TPK1	thiamin pyrophosphokinase1 (.1...		Potri.014G130900 [exp]	19.33	0.7694
AT1G63850			BTB/POZ domain-containing prot...		Potri.004G154600 [exp]	26.30	0.7984
AT3G58560			DNAse I-like superfamily prote...		Potri.006G195600 [exp]	35.88	0.7595
AT1G48110		ECT7	evolutionarily conserved C-ter...		Potri.010G152300 [exp]	39.59	0.7867
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Potri.002G039900 [exp]	43.35	0.7756	APG9.1
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Potri.005G116400 [exp]	46.66	0.7761
AT2G20330			Transducin/WD40 repeat-like su...		Potri.014G193500 [exp]	47.90	0.7602

Compare expression of checked genes

Potri.006G257400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.