Plant FIBer expression Database

Potri.006G257800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G257700
[exp]
103 / 3e-28 ND /
Potri.018G024000
[exp]
91 / 2e-23 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.006G257800.1 pacid=42768294 polypeptide=Potri.006G257800.1.p locus=Potri.006G257800 ID=Potri.006G257800.1.v4.1 annot-version=v4.1
ATGGAGGGTCTTCTCTGCTCAAACACTGTCGTTTATGAGGGCTTCTCCCCTTCTTTAATGGAAGCTTTAGTACTTGAAATAGCCATTGCTGCTTCGAAGG
CACTTGCTTTGTCACTTTTCATGATGGGTTCTCTGCCTAACGGATCCAGTGTCTTGCCAGAAGAGTCAGGCACAAGTCAAGGGTGTCCTTTGACTGAGCT
TCACACAAAGAAGAAACCTGATCCTGATAATCAAGATGGCAGTGATACTGAGGATGATGAAGGGGATGATGACGATGATGGCCAAGATGATCAGGATGAT
GATGATGATGATGATGAAGGTGCTGATGAGGATGAGCCTGGCAAAGACAGCGAGGATGGTGGGGATCCAGAGGATGAGCCGGAAGCCAATGGTGATGGTG
GCAGCGATGACGATGATGACGAAGATGATGACGATGAAGATGATGACGACGACAATGATGAGGAAGAAGATGAGGAGGAGGAGGAAGACGAGGAAGATAT
TCCCCAGCCACCAGCTAAGAGGAGGAAATGA
AA sequence
>Potri.006G257800.1 pacid=42768294 polypeptide=Potri.006G257800.1.p locus=Potri.006G257800 ID=Potri.006G257800.1.v4.1 annot-version=v4.1
MEGLLCSNTVVYEGFSPSLMEALVLEIAIAASKALALSLFMMGSLPNGSSVLPEESGTSQGCPLTELHTKKKPDPDNQDGSDTEDDEGDDDDDGQDDQDD
DDDDDEGADEDEPGKDSEDGGDPEDEPEANGDGGSDDDDDEDDDDEDDDDDNDEEEDEEEEEDEEDIPQPPAKRRK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.006G257800
[exp]
0 1
Potri.006G257700
[exp]
7.93 0.7765
AT5G13470 unknown protein Potri.001G020700
[exp]
8.06 0.7535
AT5G53070 Ribosomal protein L9/RNase H1 ... Potri.012G017300
[exp]
9.94 0.8262
AT5G53070 Ribosomal protein L9/RNase H1 ... Potri.012G121228
[exp]
17.88 0.8256
AT1G16790 ribosomal protein-related (.1) Potri.010G254100
[exp]
18.81 0.8250
AT3G52230 unknown protein Potri.010G233400
[exp]
21.35 0.8090
AT5G62290 nucleotide-sensitive chloride ... Potri.015G129900
[exp]
21.44 0.7808
AT3G11500 Small nuclear ribonucleoprotei... Potri.006G211100
[exp]
21.54 0.8122
AT4G37090 unknown protein Potri.007G034600
[exp]
33.31 0.7907
AT5G62290 nucleotide-sensitive chloride ... Potri.012G128500
[exp]
34.27 0.8113

Potri.006G257800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.