Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80490 1467 / 0 TPR1 TOPLESS-related 1 (.1.2) AT1G15750 1451 / 0 TPL, WSIP1 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) AT3G15880 1303 / 0 WSIP2, TPR4 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) AT3G16830 1230 / 0 TPR2 TOPLESS-related 2 (.1) AT5G27030 876 / 0 TPR3 TOPLESS-related 3 (.1.2) AT2G25420 223 / 4e-61 transducin family protein / WD-40 repeat family protein (.1) AT3G49660 64 / 2e-10 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G15440 64 / 6e-10 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) AT2G43770 59 / 1e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT5G52820 59 / 2e-08 WD-40 repeat family protein / notchless protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G023900 [exp] 1977 / 0 AT1G80490 1420 / 0.0 TOPLESS-related 1 (.1.2) Potri.003G030000 [exp] 1476 / 0 AT1G80490 1922 / 0.0 TOPLESS-related 1 (.1.2) Potri.001G200500 [exp] 1462 / 0 AT1G15750 1922 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Potri.006G066800 [exp] 1339 / 0 AT3G15880 1689 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Potri.018G128000 [exp] 1336 / 0 AT3G15880 1650 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Potri.013G081300 [exp] 1238 / 0 AT1G15750 1540 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Potri.005G021700 [exp] 1228 / 0 AT5G27030 1714 / 0.0 TOPLESS-related 3 (.1.2) Potri.013G012100 [exp] 1203 / 0 AT5G27030 1698 / 0.0 TOPLESS-related 3 (.1.2) Potri.006G258100 [exp] 1124 / 0 AT1G80490 1211 / 0.0 TOPLESS-related 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011481 [exp] 1456 / 0 AT1G15750 2011 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10023119 [exp] 1439 / 0 AT1G15750 1959 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10043258 [exp] 1340 / 0 AT3G15880 1776 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Lus10006650 [exp] 1243 / 0 AT1G15750 1593 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10019401 [exp] 1232 / 0 AT1G15750 1596 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10038094 [exp] 1087 / 0 AT1G80490 1525 / 0.0 TOPLESS-related 1 (.1.2) Lus10029876 [exp] 892 / 0 AT5G27030 1722 / 0.0 TOPLESS-related 3 (.1.2) Lus10020668 [exp] 890 / 0 AT5G27030 1717 / 0.0 TOPLESS-related 3 (.1.2) Lus10011905 [exp] 776 / 0 AT3G15880 920 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Lus10001924 [exp] 710 / 0 AT1G15750 1006 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.006G257900.3 pacid=42768449 polypeptide=Potri.006G257900.3.p locus=Potri.006G257900 ID=Potri.006G257900.3.v4.1 annot-version=v4.1 ATGACGTCTTCGCTTAGTAGAGACCTCATCTTTTTGATTTTGCAGTTTCTTGATGAAGAAAAGTTTAAAGAAACTGTTCACAAGCTCGAGCAAGAATCGG GGTTGTTCTTCAATGCAAAGTACTTTGAGGAGCTTGTGCTGGGTGGCAACTGGGATGAGGTTGAGAAGTATCTATCTGGGTTTACCAAAGTGGATGATAA TCGATATTCGATGAAGATATTTTTTGAAATTCGCAAGCAAAAGTACCTCGAGGCGTTGGATAAGCTTGATCGGACCAAGGCTGTAGATATCCTCATGAAG GATCTGAAAGTTTTTGCCTCTTTTAATGAAGACTTGTTTAAAGAAATTACCCAGCTGCTCACATTGGATAATTTTAGGGAAAATGACCAGCTCTCCAATT ATAGAGATACAAAGTCAGCAAGAGCAATAATGTTGATTGAGCTCAAGAAGCTTATTGAGTCAAATCCCCTTTTCCGTGACAAATTGCAGTATCCTAACAT AAAAAATTCAAGATTACGAATGCTTATCAACCAAAGCTTGAATTGGCAGCATTCGCTTTGTGGTAATCCAGGGCAAAACCCTGATATAAGAACCCTCTTT TACGATCACAGTTGTAGAAATGCTAATCATGCGTATCCCCAACTAGCAGCAAACAATCACCTCATAGCTTCTGCACCAAAGTCTGAAGGTTTTCTCCCGA TAGTTGCAAATGGGTCATTCCAACCAGCACCAGCTCCGGCACCGGCACCGGCACCGGCACCAGTTCAAACACCCTTAACAGCATGGATATCCAATCCCAC AACTGTAACTCATCCAGTAGTTCCTGGAGTTGGACTAAATTTCATCAGCCCAAATCCAGGTATAGCTGCAATGCCAAAAGGTCCTGGCGATTCTGATGTG TCAAGGCCAAGATTTTCTGGGGCTTTGGACAGGCAGGTAATGTTGACAGGAAATAATTCTGGTCAAAATCATCATGGCCTGGCCTTTAACATAACCGAAG AGTTGCCCAGGAATGTGGCATGTACATTAAATCAAGGCTCAGCTCCCACAAGCATGGACTTCCATCCTCTTCGACAGACTCTACTTCTGGTTGGGACTGC TATTGGAGACATTAGTTTGTGGGACGTTAGTTCTAGGGAGAAGTTGGCCTCTAAAAGTTTTCAGGTATGGGATATTGGAGCAAGTTCAATGGTATTGAAG GCATCCATAGTCAAAGACCCATCTGTCTCAGTTAAACGTGTATTATGGAGTCCTGATGGTTCTTTATTTGGGGTTGCATATTCTAAGCATATGGTGCAGT TATACACTTGTTATGGTGGACATGATATTCGGCATCATATAGAGATCGATGCTCATGTTGGAAGTGTAAATGATCTAGCATTTTGCAACCCCAACAAGCA ATCTGTTATCACTTGTGGTGATGACAAGACCATCAAGGTGTGGGAAGTGGCCACTGGTGCCAAATTGTCTACGTTTGAAGGTCATGAAGCTCCTGTTCAT TCGATCTGTCCCCATTCCAGGGAAACTGTTCATTTTGTCTTTTCAACATCACTGGATGGGAAAATAAAGGCATGGTTGCATGGCGTGATGGGATCTAGGG TTGATTATGATGCTCCTGGTCGATCATGCTCCACAATGGCATATAGTGCTGATGGGAAAAGGCTATTTTCATGTGGGACCAGTCAAGATGGGGAGTCACA CATGGTGGAATGGAATGAAAATGAAGGTACTATTAAGAGAACCTACCAAGGATTTCAAAAGCGTTCTTTGGGTGTTGTTCAATTCGATACTACCAAGAAT AGGTTCTTGGCTGTTGGTGATGACTACTCAATCAAATTCTGGGATATGGATAACCCTTCTCTTTTGACAACCATTGACGCGGAGGGAGGCCTACCAACAA GTCCACGTATTCGATTCAATAAAGGGGGCAACCTATTGGCTGTATCTGCAAATGATAATAGAATCAAAATCTTGGCAACAGTTGATGGTCTCTGCTTGAT GCGCACCTTTGAAGGCCATTCTCTGGTTGCCTCGAGACTTGGAATTGCATCTGAGGCACTGATAAAGAATGGTGACACCAGAAACTCAGAAGGTGTAAAA CCAAGGGTGCCTGAAGAAGCACACCCACCAAAGATATGGAAGCTCACTGAGATTAATGATCCTTCCAAGCTTCATTCGCTGAGACTCTCAGCTCGTGTTA AAACAGACAAGATCGCGAGGTTGGTCTACACAAATTCAGGCACTGCCATCTTGGCACTTGCATTAAATGCAATTCATCTACTTTGGAAGTGGCCTCGAAA TGACCTTAATTCGAGTGGGAAGGCAACAACCAAGGCTACCCCTCAATTGGTGCAACCAGCATCTGGCATATTAATGACCAATGATCTCATGGATGCTAGA CCAGAAGAGGCTGTGCCATGTTTTGCTCTGTCGAAGAATGATTCCTATATCATGTCTGCCTCTGGGGGGAAAATTTCCTTGTTCAACACAATGACATTCA AGATTATGACAGCATTCATGCCTCCGCCACCTGCAGCGACGTATCTTGCGTTCCATCCTCAAGATAACAATATTGTTGCAGTGGGAATGGACGATTCCAC AGTACACATATATAATGTTCGTGTGGATGAGGTCAAGAGCAAGCTTAAGGGTCACTCTAAGAGAATCACTGGTCTTGCCTTCTCTAGTGTGCTGAATACA CTTGTTTCCTCTGGCGCAGATTCTCAGGTTATCGTGTGGAGCATTGATAGGTGGGAAAGGAAGAAAAATTGTGTCTTGCAGGTTCCAGCTGGAAGGACAC CTGCAGCAATGTCAGACACCCAAGTTCAGTTTCACCAAGATCAAGTCCATTTGCTTGTTGCACATGACACTCAGCTTGGCATTTATGAAACAACAAAACT TGAATGCTTAAAACAGTGGACCATTGGAGAGTTTTCAGCACCAATCTCGCATGCAACATTCTCTTGTGATAGCCAGTTAGTTTATGCTAGCTTCCTGGAT GGAACTCTGCGTGTATTTAGTGCATCAAATCTTCAAGTGAGATGCCAGATTAATCCCAATTCCTATCTTCCATCAGATGTCAGTTCTACTGTATATCCTC TAGCAATTGCTGCACATCCCCAAGAACCTAATCAGTTTGCCATAGGCCTAACAGATGGCAGTGTTCAAGTTTTCGAGCCTCTTGAGTCTGACGGCAAATG GGGCGTTCCCCCACCTGCTGAAAATGGGGCATCAGGTAGCATGCCTTCCACTACCGCACCTCCAGCTGTTGCTTTAGATCAACCCCAGAACATGGAGTGA
AA sequence Show only first row Show all	>Potri.006G257900.3 pacid=42768449 polypeptide=Potri.006G257900.3.p locus=Potri.006G257900 ID=Potri.006G257900.3.v4.1 annot-version=v4.1 MTSSLSRDLIFLILQFLDEEKFKETVHKLEQESGLFFNAKYFEELVLGGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKLDRTKAVDILMK DLKVFASFNEDLFKEITQLLTLDNFRENDQLSNYRDTKSARAIMLIELKKLIESNPLFRDKLQYPNIKNSRLRMLINQSLNWQHSLCGNPGQNPDIRTLF YDHSCRNANHAYPQLAANNHLIASAPKSEGFLPIVANGSFQPAPAPAPAPAPAPVQTPLTAWISNPTTVTHPVVPGVGLNFISPNPGIAAMPKGPGDSDV SRPRFSGALDRQVMLTGNNSGQNHHGLAFNITEELPRNVACTLNQGSAPTSMDFHPLRQTLLLVGTAIGDISLWDVSSREKLASKSFQVWDIGASSMVLK ASIVKDPSVSVKRVLWSPDGSLFGVAYSKHMVQLYTCYGGHDIRHHIEIDAHVGSVNDLAFCNPNKQSVITCGDDKTIKVWEVATGAKLSTFEGHEAPVH SICPHSRETVHFVFSTSLDGKIKAWLHGVMGSRVDYDAPGRSCSTMAYSADGKRLFSCGTSQDGESHMVEWNENEGTIKRTYQGFQKRSLGVVQFDTTKN RFLAVGDDYSIKFWDMDNPSLLTTIDAEGGLPTSPRIRFNKGGNLLAVSANDNRIKILATVDGLCLMRTFEGHSLVASRLGIASEALIKNGDTRNSEGVK PRVPEEAHPPKIWKLTEINDPSKLHSLRLSARVKTDKIARLVYTNSGTAILALALNAIHLLWKWPRNDLNSSGKATTKATPQLVQPASGILMTNDLMDAR PEEAVPCFALSKNDSYIMSASGGKISLFNTMTFKIMTAFMPPPPAATYLAFHPQDNNIVAVGMDDSTVHIYNVRVDEVKSKLKGHSKRITGLAFSSVLNT LVSSGADSQVIVWSIDRWERKKNCVLQVPAGRTPAAMSDTQVQFHQDQVHLLVAHDTQLGIYETTKLECLKQWTIGEFSAPISHATFSCDSQLVYASFLD GTLRVFSASNLQVRCQINPNSYLPSDVSSTVYPLAIAAHPQEPNQFAIGLTDGSVQVFEPLESDGKWGVPPPAENGASGSMPSTTAPPAVALDQPQNME

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.006G257900 [exp]	0	1
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Potri.003G178600 [exp]	1.00	0.9131
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Potri.009G046800 [exp]	3.00	0.8991
AT3G44600		AtCYP71, CYP71	cyclophilin 71, cyclophilin71 ...		Potri.009G146400 [exp]	3.16	0.9054
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Potri.001G252600 [exp]	3.74	0.8842
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Potri.002G172800 [exp]	4.89	0.8924
AT1G65540			LETM1-like protein (.1)		Potri.010G178400 [exp]	6.00	0.8678
AT5G13660			unknown protein		Potri.006G082800 [exp]	6.00	0.8875
AT2G27090			Protein of unknown function (D...		Potri.009G159000 [exp]	6.24	0.8756
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Potri.011G145450 [exp]	9.00	0.8830
AT4G26450		WIP1	unknown protein		Potri.011G169200 [exp]	9.38	0.8835

Compare expression of checked genes

Potri.006G257900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.