Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80490 1212 / 0 TPR1 TOPLESS-related 1 (.1.2) AT1G15750 1197 / 0 TPL, WSIP1 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) AT3G15880 1115 / 0 WSIP2, TPR4 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) AT5G27030 1030 / 0 TPR3 TOPLESS-related 3 (.1.2) AT3G16830 772 / 0 TPR2 TOPLESS-related 2 (.1) AT2G25420 231 / 9e-64 transducin family protein / WD-40 repeat family protein (.1) AT3G49660 57 / 4e-08 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 50 / 5e-06 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 50 / 8e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT3G16650 49 / 2e-05 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G023800 [exp] 1747 / 0 AT1G80490 1195 / 0.0 TOPLESS-related 1 (.1.2) Potri.003G030000 [exp] 1233 / 0 AT1G80490 1922 / 0.0 TOPLESS-related 1 (.1.2) Potri.001G200500 [exp] 1218 / 0 AT1G15750 1922 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Potri.006G257900 [exp] 1145 / 0 AT1G80490 1466 / 0.0 TOPLESS-related 1 (.1.2) Potri.018G128000 [exp] 1140 / 0 AT3G15880 1650 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Potri.006G066800 [exp] 1122 / 0 AT3G15880 1689 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Potri.013G081300 [exp] 1079 / 0 AT1G15750 1540 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Potri.005G021700 [exp] 1051 / 0 AT5G27030 1714 / 0.0 TOPLESS-related 3 (.1.2) Potri.018G023900 [exp] 901 / 0 AT1G80490 1420 / 0.0 TOPLESS-related 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011481 [exp] 1221 / 0 AT1G15750 2011 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10023119 [exp] 1216 / 0 AT1G15750 1959 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10043258 [exp] 1129 / 0 AT3G15880 1776 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Lus10001951 [exp] 782 / 0 AT1G15750 1007 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10029876 [exp] 781 / 0 AT5G27030 1722 / 0.0 TOPLESS-related 3 (.1.2) Lus10020668 [exp] 778 / 0 AT5G27030 1717 / 0.0 TOPLESS-related 3 (.1.2) Lus10001924 [exp] 766 / 0 AT1G15750 1006 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10011905 [exp] 676 / 0 AT3G15880 920 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Lus10019401 [exp] 650 / 0 AT1G15750 1596 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10006650 [exp] 629 / 0 AT1G15750 1593 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0561 [poplar] [flax] LisH PF08513 [poplar] [flax] LisH LisH
Representative CDS sequence Show only first row Show all	>Potri.006G258100.8 pacid=42769996 polypeptide=Potri.006G258100.8.p locus=Potri.006G258100 ID=Potri.006G258100.8.v4.1 annot-version=v4.1 ATGTCTGCTCTCAGTAAAGATCTTGTCTTGTTAATCTCACAGTTCTTAGATGAGGAAGGGTTCAAAGAAACTGCTCGCATGCTTGAGCGTGAAAGTAGTT ATTACTTCAACATGAAGTTTTTTGAGGATATGATATGCAGTGGTGATTGGGATGAGGCTGAGAGATATTTTTCTTGTTTCACAAAATTAACTGACAATAG ATTCTCGATGAAGGTCTATTTTGAAATTAGGAAGCAGAAATTTCTGGAGGCATTGGACAACAAGGACCGTGCCAAGGCTTTAGACATCCTTGTGAAGGAT TTGAAAACTTTTGTCTCATATAATGAGGAGCTGTTTAAGGAAATGACTTTGCTTTTGACATTGAATGATATAAGGGACCATGAGTCACTCTCCATGTATA GTGATGCAGACTCTGCAAGAAAAGTTATGAGGGTTGAGCTTAAGAAACTTATTGAAGCAAACCCCCTTTTCAGCGACAAATTGGAATTTCCGAATGCTGC AAGTCATAGATTACGACGCCTCATAAACCAAAGTCTGAATTGGCAGCATGTTCTTTGTGCATATCCACAGCCAAATCCTGATATAAGAACCCTTTTTGTG GATCATGTCTGTGTACCAATTCCATCAGATGATCATTTATTTTCCACATTGAGTGATAGCAATCCAGTGCCTTCTCAAACCACATCAATGCTAGTTTCAA CTTCCTCAGCCTCAAATTCTACCTCATCTTCTGAGGCTCACTCTTCAATTTCAAGTGAAGCTTTGTCTCTCGGTGATCCAACAAACATAGGAATTGCTAC TATTACAGATGGTTCGGAGGATATTACTAGTGTACATTACAGTAGTATTCCTGAAAGTGAACTTGCAATCCTAAAAAGGCCTTCTGACGAGGAAATATCA GCTGACTCTCATCCTGATCAAAGCTCCATCGACATTTCTGATGACTTGCCTAAGAATGTTTTAAGGATATTAAATGAGGGGTCATCTCCAACAAGCATGG ATTTTCACCCTGAACATCAGACTGTTCTTCTAGTTGGAACTTCTGTGGGGGACATAGGATTGTGGGAAGTTAGATCAGGGGAAAGTTTACTTTCAAGGAA TTTTAAGGTCTGGGATATTGCAGCATGCTCAAAGATTTTCAAGGCAACTTTGCTCAAGGATCCTAGTGTTTCTGTGAATCGTGTTGCTTGGAGCCCAGAA GGTTGTTTCTTCGGGGTTGCGTATTCAAAACACATAGTGCAAATATATTCTTATAATGATGCCAAAGATGTACAGCAGAAATTGGAGATTGATGCTCATG TTGGTGGTGTAAATGACCTAGCATTCTCTGCCCCTGAGAAACAACTGTTGGTCATTACATGTGGTGATGACAAGACAGTTAAGGCATGGGATGTGACCAG TGGTGTCAAAATGTATTCTTTTGAAGGCCATGATGCTCCTGTTTATTCTCTCTGTCCTCATAGCAAGGGAAACGTTCATTTTCTCTCTGCAACATCAGTG AACAGCAACATAAAAGTGTGCCTATATGATAATCTAGGAGCTAAAGTAGATTATGATGCTCCTGGCCTGGGGTGTACATCAATGGCTTATAGTGGTGATA GAAGGCTTTTTTCATGTGGGACCAGTAAATCTGGAGAGTCATTTCTTGCTGAATGGGGTGACTCTGAAGGTTCCATAAAAAGAACCTATCTAGGATTGCA GAAGAGTTCTTCGGGTGTAGTGCAGTTTGATATAATGAAGAACCAGGTTTTAGCTGCTGGTGATGAGCATGTGATCAAATTATGGGATATGGACAAAGTT GAGCTTTTCACAACCATTGATGCTGAGGGAGGCTTACCAGAAAACCCTCGTGTTCGATTCAATAAGGAAGGCACGCTGTTAGCTGTTTCTGCAAATGACA ACAAAATCAAGATCTTGGCAAAAGATAGCGGTCTCCATTCACTGCATACATCACAAAATTGTTCTGATGATGCTTCTAGAGATCTCTGTCATAACTTTAA GAAGCTTGGTATTGAACCGAGTTCAACTGTTGCTTGTGCTGGAGCTGCAGATGAAGCTGTCACAAACAATGGAAACCCAGAAAACTCGGAGGTAGTGAAA TCTAAAATTACTGGAAAATCCACTACATCAAAGAGCGGGAGGCTCATTTTAATAACAAGCCCTTCTCAGTTCCAGATTCTGCGACTTCCTTCTCCCATGA AAGCAAACAAGATATCGAGGCTCATTTACAACAATGCGGGTAACTCCATTTTGGCATTAACATCAAATGCCTCCCATTTATGTTGGAAATGGTCACAGAA TGACACTCACTCGAGTGACAAGGCAACTGCAAAAGTTCCCCCTCAACTGTGGCAACCCAGTAGTAGCTCAGGACTGATGACAAATGACCTTACAGGCAGC AGCCCTGAAGAGGCAGTTCCCTGCTTTGCCCTGTCTAAGAATGATTCATATCTCCTGTCAGCATGTGGAGGGAGAATTTCTTTGTATAGCTTGCTGAAAT TCAAGACAATGCTGCCTATCATGCAACCACCTGCAGCAACATGTATTGCTTTCTACCCTCAAGATAACAACATACTTGCTATAGGGAGAGATGATTCCAC GATTCTAATTTATAATGTCCGTTCAGCTAAGGTCGATACCATACTTGAGGGTCATTCTAAAAGAGTCTCTGGTCTTGCATTCTCTAATGATCTGAATGTA CTTGTTTCTTCTGGAGCAGATGCTCAGATTTTTGTCTGGAAAGTTGAAGGGTGGGGAAAAGAGAGGAGCAGATTCTTGCAGATTCCCGATGACAGAACAC TTTCTTCATTATCATTAGATACAGACATCCAGTTTCATCAGAATCAGACAGAATTCCTTGCAGTACATGAGACTTGCCTTTCAATCTATGACGCCAGAAA ATTAGAGTGTGTAAAGCAGTGGAGTCCAGGCGATTTTGGAGCACCAATCTCCCATGCAACATTCTCGTGTGATGGCCAGATGGTGTATGCTAGCTTTGAA GATGGGCTTGTATCTATATTTGATGCTTCGGATTTTCAGTTATACTGTCGGATTAATCCAACTGCTTACCTTTCTCCCACTTCAAGTTTGGGAGTGTATC CGCTTGTCGTTGCCGCACATCCTCAGGAACCTGACCAGTTTGCAGTGGGACTGAAAGATGGTGCTGTTATTGTCTTTGAGCCTCCAATTTCTGCCGGTAA ATGGAGTATGCTGACAGCATATGAAAACGGATCAGCAAGTAAAATACCTGCTGAATCCGAAGCTAATCAGTGA
AA sequence Show only first row Show all	>Potri.006G258100.8 pacid=42769996 polypeptide=Potri.006G258100.8.p locus=Potri.006G258100 ID=Potri.006G258100.8.v4.1 annot-version=v4.1 MSALSKDLVLLISQFLDEEGFKETARMLERESSYYFNMKFFEDMICSGDWDEAERYFSCFTKLTDNRFSMKVYFEIRKQKFLEALDNKDRAKALDILVKD LKTFVSYNEELFKEMTLLLTLNDIRDHESLSMYSDADSARKVMRVELKKLIEANPLFSDKLEFPNAASHRLRRLINQSLNWQHVLCAYPQPNPDIRTLFV DHVCVPIPSDDHLFSTLSDSNPVPSQTTSMLVSTSSASNSTSSSEAHSSISSEALSLGDPTNIGIATITDGSEDITSVHYSSIPESELAILKRPSDEEIS ADSHPDQSSIDISDDLPKNVLRILNEGSSPTSMDFHPEHQTVLLVGTSVGDIGLWEVRSGESLLSRNFKVWDIAACSKIFKATLLKDPSVSVNRVAWSPE GCFFGVAYSKHIVQIYSYNDAKDVQQKLEIDAHVGGVNDLAFSAPEKQLLVITCGDDKTVKAWDVTSGVKMYSFEGHDAPVYSLCPHSKGNVHFLSATSV NSNIKVCLYDNLGAKVDYDAPGLGCTSMAYSGDRRLFSCGTSKSGESFLAEWGDSEGSIKRTYLGLQKSSSGVVQFDIMKNQVLAAGDEHVIKLWDMDKV ELFTTIDAEGGLPENPRVRFNKEGTLLAVSANDNKIKILAKDSGLHSLHTSQNCSDDASRDLCHNFKKLGIEPSSTVACAGAADEAVTNNGNPENSEVVK SKITGKSTTSKSGRLILITSPSQFQILRLPSPMKANKISRLIYNNAGNSILALTSNASHLCWKWSQNDTHSSDKATAKVPPQLWQPSSSSGLMTNDLTGS SPEEAVPCFALSKNDSYLLSACGGRISLYSLLKFKTMLPIMQPPAATCIAFYPQDNNILAIGRDDSTILIYNVRSAKVDTILEGHSKRVSGLAFSNDLNV LVSSGADAQIFVWKVEGWGKERSRFLQIPDDRTLSSLSLDTDIQFHQNQTEFLAVHETCLSIYDARKLECVKQWSPGDFGAPISHATFSCDGQMVYASFE DGLVSIFDASDFQLYCRINPTAYLSPTSSLGVYPLVVAAHPQEPDQFAVGLKDGAVIVFEPPISAGKWSMLTAYENGSASKIPAESEANQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.006G258100 [exp]	0	1
AT1G70630			Nucleotide-diphospho-sugar tra...		Potri.008G186800 [exp]	1.73	0.8719
AT5G17680			disease resistance protein (TI...		Potri.019G069500 [exp]	2.44	0.8677
AT2G46800		ATMTP1, ZAT1, Z...	ZINC TRANSPORTER OF ARABIDOPSI...		Potri.002G180100 [exp]	5.29	0.8527	PtrMTP2,Pt-MTP1.2
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Potri.016G122901 [exp]	6.32	0.8332
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.008G187700 [exp]	6.70	0.8659
AT3G06810		IBR3	IBA-RESPONSE 3, acyl-CoA dehyd...		Potri.010G010448 [exp]	7.54	0.8250
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Potri.006G134450 [exp]	8.48	0.8371
AT4G23010		ATUTR2, UTR2	UDP-galactose transporter 2 (....		Potri.003G121000 [exp]	10.19	0.8389
AT5G04940		SUVH1	SU(VAR)3-9 homolog 1 (.1), SU(...		Potri.006G027600 [exp]	11.74	0.8204
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.018G023900 [exp]	12.84	0.8286

Compare expression of checked genes

Potri.006G258100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.