Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25280 440 / 3e-157 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G023700 [exp] 516 / 0 AT2G25280 429 / 7e-153 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001925 [exp] 457 / 7e-164 AT2G25280 492 / 7e-178 unknown protein Lus10001950 [exp] 455 / 5e-163 AT2G25280 486 / 2e-175 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0283 [poplar] [flax] LigB PF01875 [poplar] [flax] Memo Memo-like protein
Representative CDS sequence Show only first row Show all	>Potri.006G258200.1 pacid=42768631 polypeptide=Potri.006G258200.1.p locus=Potri.006G258200 ID=Potri.006G258200.1.v4.1 annot-version=v4.1 ATGGAAAAAATCAGAAGAGCATCCCATGCTGGTTCTTGGTACACCGACGACCCTAAAAAACTAGAAGAAGAGCTTGAGGGATGGCTAAGTGATACTGGAT TAACGAAATCTCCTGATGTGCGCGGTGTTATTGCTCCGCATGCAGGTTATTCATATTCAGGTCGTGCTGCTGCTTACGCTTTTGGAAATATTGATCCCAC TAACATTACTCGGGTATTTCTTCTCGGTCCATCACACCATTATTATACGCCAAAATGTGCTCTTTCAACGGCTGCAGTTTACAAAACGCCGATAGGGGAC TTGCCTATTGATTTGGAAGTTATAGAGGAACTTAAAGCCACGGGAAAATTTGAGTTGATGGATCTTCAGGTTGATGAGCACGAACATAGCATGGAAATGC ACTTGCCATATCTTGCTAAGATATTTGAAGGGCACCCGGTGAAAGTTGTGCCCATTTTGGTCGGTGCTGTTAGTGCTGACAATGAGGCCATGTATGGGTG CTTGTTGGCAAAATATGTTGATGATCCAACTAACTTCTTTTCTGTCTCTTCAGATTTTTGTCACTGGGGTTCTCGGTTCCATTACACGCGCTATGACAAG AAATGTGGCCCCATACACAAGTCTATTGAGGCATTGGACAAGATGGGCATGGACATAATTGAAACAGGGAATGCAGATGCGCTTAAACAATATCTGTCGG AGTATGGCAACACTATCTGTGGAAGACATCCTATTAGTGTTTTCTTGCATATGTTGAGAAATTGCTCGACAAAGATAAAGATCAAGTTCCTCCGGTACGA GCCGTCTAGCCAATGCAAAACAATGAGAGACAGCAGTGTCAGCTATGCATCTGCAGCAGCGAAGGTCGATGCTTGA
AA sequence Show only first row Show all	>Potri.006G258200.1 pacid=42768631 polypeptide=Potri.006G258200.1.p locus=Potri.006G258200 ID=Potri.006G258200.1.v4.1 annot-version=v4.1 MEKIRRASHAGSWYTDDPKKLEEELEGWLSDTGLTKSPDVRGVIAPHAGYSYSGRAAAYAFGNIDPTNITRVFLLGPSHHYYTPKCALSTAAVYKTPIGD LPIDLEVIEELKATGKFELMDLQVDEHEHSMEMHLPYLAKIFEGHPVKVVPILVGAVSADNEAMYGCLLAKYVDDPTNFFSVSSDFCHWGSRFHYTRYDK KCGPIHKSIEALDKMGMDIIETGNADALKQYLSEYGNTICGRHPISVFLHMLRNCSTKIKIKFLRYEPSSQCKTMRDSSVSYASAAAKVDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25280			unknown protein		Potri.006G258200 [exp]	0	1
AT1G16390		3-Oct, ATOCT3	organic cation/carnitine trans...		Potri.016G039000 [exp]	3.16	0.7635
AT3G50950		ZAR1	HOPZ-ACTIVATED RESISTANCE 1 (....		Potri.013G056000 [exp]	5.74	0.7200
AT5G64310		ATAGP1, AGP1	arabinogalactan protein 1 (.1)		Potri.001G310400 [exp]	7.74	0.7534
AT3G24480			Leucine-rich repeat (LRR) fami...		Potri.018G075900 [exp]	10.00	0.7467
AT5G12330		LRP1	LATERAL ROOT PRIMORDIUM 1, Lat...		Potri.001G027700 [exp]	17.43	0.7062
AT3G23750			Leucine-rich repeat protein ki...		Potri.006G073900 [exp]	21.81	0.7049	RHG4.2
AT3G11080		AtRLP35	receptor like protein 35 (.1)		Potri.012G013435 [exp]	23.83	0.7526
AT5G42340		PUB15	Plant U-Box 15 (.1)		Potri.009G165900 [exp]	24.08	0.7015
AT4G01140			Protein of unknown function (D...		Potri.002G166900 [exp]	28.35	0.7182
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Potri.001G071000 [exp]	28.72	0.7070	EXGT.1

Compare expression of checked genes

Potri.006G258200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.