Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25290 680 / 0 Phox1 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein AT4G32070 651 / 0 Phox4 Phox4, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) AT5G20360 365 / 8e-115 Phox3 Phox3, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) AT1G62390 355 / 1e-111 CLMP1, Phox2 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) AT4G30480 67 / 7e-12 TPR1, AtTPR1 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT3G58620 65 / 2e-10 TTL4 tetratricopetide-repeat thioredoxin-like 4 (.1) AT1G33400 59 / 1e-08 TPR9 tetratricopeptide repeat 9, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G25230 56 / 9e-08 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) AT5G65160 55 / 1e-07 TPR14 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) AT1G53300 55 / 1e-07 TTL1 tetratricopetide-repeat thioredoxin-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G023500 [exp] 851 / 0 AT2G25290 851 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Potri.018G121100 [exp] 600 / 0 AT2G25290 737 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Potri.011G021000 [exp] 382 / 2e-121 AT1G62390 885 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Potri.004G002900 [exp] 380 / 5e-121 AT1G62390 926 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Potri.006G178900 [exp] 77 / 2e-15 AT4G30480 275 / 1e-92 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.018G100700 [exp] 73 / 6e-14 AT4G30480 303 / 8e-104 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.007G091200 [exp] 59 / 8e-09 AT5G65160 570 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.002G094800 [exp] 59 / 1e-08 AT5G65160 451 / 2e-152 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.011G111500 [exp] 59 / 1e-08 AT1G53300 707 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006196 [exp] 747 / 0 AT2G25290 884 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10001927 [exp] 743 / 0 AT2G25290 879 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10001947 [exp] 737 / 0 AT2G25290 884 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10001948 [exp] 723 / 0 AT4G32070 864 / 0.0 Phox4, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Lus10038106 [exp] 524 / 9e-178 AT2G25290 655 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10008035 [exp] 524 / 9e-178 AT2G25290 667 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10039592 [exp] 376 / 4e-119 AT1G62390 888 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Lus10029481 [exp] 365 / 4e-115 AT1G62390 889 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Lus10035117 [exp] 68 / 4e-12 AT4G30480 291 / 3e-99 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10031983 [exp] 67 / 4e-11 AT4G30480 222 / 9e-76 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00564 [poplar] [flax] PB1 PB1 domain CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.006G258300.1 pacid=42768567 polypeptide=Potri.006G258300.1.p locus=Potri.006G258300 ID=Potri.006G258300.1.v4.1 annot-version=v4.1 ATGGGAAAGCCAACTGGTAAAAAGAAGAATCCGGGAACAGCAACGCCGCCGGCATCACCGAGAACAACCGGTGACATGAGGCAAACCAAATCCTCAAAGG CCTTTGATGAAGACACGGCAATTTTCATTAACATGTCTCAAGAGCTCAAAGAAGAAGGCAACAAGCTCTTTCAAAGGAGAGATCATGAAGGTGCCATGCT GAAGTACGAAAAAGCCCTCAAGCTACTACCAAGAAACCATATTGATGTGGCTTATCTACGCACCAACATGGCTGCTTGCTACATGCAAATGGGTCTTGGT GAGTATCCTCGAGCAATCATTGAATGTAATTTAGCTTTAGAGGTTGTGCCAAAATATAGCAAAGCTTTGTTGAAAAGAGCTAGGTGTTATGAGGCTCTGA ATAGATTGGATTTGGCTTTTAGGGATGTTAATAATGTATTGAGTATGGAACCTAATAATATGACGGGGTTGGAGATATTGGAGAGTGTTATGAAGGCAAT GAGTGAAAAGGGTATTAGTTTTGACGAGAAATTAATTGGGTTGGATAACGTGGACGAAACTGGGGTGGCACGCTTGCGTAAAGTGGTGAAAGAAAAGGTA AAGAAGAAGAAGAAGATTAGTGGTAAAGGGGAGGAGAAGAAAATTGGCGGTAAAGTAGAAGAGAAGAAGGTGGAGAATAAGGATAAGGTAGTTGTGCGGG AGAAGAAGGTGAGTCCTGTTGTTAAGGATAAAGAGGTAGTTATGAAGACTATTGAGGAAGAAAAGGTGGTTACCAAAGATGTCAAGGAGGAGAAAGTGAT AGACAAGACAGTGAAGCTGGTGTTTGGGGAGGATATTAGAATGGCACGATTACCTGCGAATTGTAGCATTGGATTACTAAGAGACATAGTTCGGGATAGG TTTCCTGGCTTGAACGGTGTCCTTATGAAGTACAGGGACCCGGAAGGTGATTTGATTACAATTACTACCAACGATGAACTAAGGTTAGCTGAATCATCAA GTGGTGCACAGGGGTCTCTTAGGTTCTATGTTGTTGAAGTTAGTCTTGATCAAGAACCAGCTTATGAGGGGATGGAAATTGAAGAGGAGGTGCATGAGGA TGCTAAGAAAACAAGTGATGTTGTAGAGAATGGAAATGTGGGGAAAAGTGTAGAAGTTGAGAAAGGGTCAAATCGTATTGATGATTGGATTGTTCAATTT GCACGATTGTTTAAGAACCATGTTGGGTTTGATTCTGATTCATTCTTGGATCTTCATGAACTGGGGATGAAGTTATACTCAGAGGCAATGGAGGATACTG TTACCAGTGAAGAAGCCCAAGAGCTTTTTGATATTGCTGCAGATAAGTTCCAAGAGATGGCAGCTTTGGCTTTGTTCAATTGGGGAAATGTTCACATGTC AAGGGCAAGGAAACGGATTTTCTTTTCAGAAGATGGATCAAGGGAGTCTGTACTTGCACAGGTTAAGATTGCATACGAGTGGGCCAAGAAAGAATATATG AAAGCAGGAACGAGATACCAGGAAGCTTTGAGGATCAAACCTGACTTCTATGAAGGCCTTCTTGCTCTTGGCCAACAGCAGTTTGAGCAAGCAAAGCTTT GCTGGTACCATGCTATCGGGAGCAAGATTGATTTGGAAAGCGGGCCTTGTGAGGAGGTCCTGGATCTTTATAACAAGGCTGAGGACAGCATGGAGAGGGG TATGCAAATGTGGGAAGAGATGGAAGAGCAGCGTCTAAATGGACTATCCAAATTTGACAAATATAAAGACCAGTTGCAGAAAATGGATTTGGATGGGCTA TTGAGAGATCCATCTCCTGAAGAAGCTGCAGAGCAAGCATCTAACATGAGTTCACAGATATACCTCTTATGGGGTACCATGCTGTACGAGCGATCTGTGG TGGAATATAAGCTAGAGCTACCAACTTGGGAAGAATGTTTAGAGGTTTCAGTAGAGAAGTTTGAACTTGCTGGAGCTTCTCCAACAGATATAGCTGTTAT GATAAAGAACCATTGTTCAAATTCATCCGCACTTGAAGGTTTGGGATTCAAAGTTGACGAGATTGTACAGGCATGGAATGAAATGTATGATGCGAAGAGG TGGGAGATTGGTGTTCCATCTTTCAGGCTAGAGCCATTGTTTCGTCGAAGGGTTCCAAAACTTCATGATATGCTGGAGCACGTTTGA
AA sequence Show only first row Show all	>Potri.006G258300.1 pacid=42768567 polypeptide=Potri.006G258300.1.p locus=Potri.006G258300 ID=Potri.006G258300.1.v4.1 annot-version=v4.1 MGKPTGKKKNPGTATPPASPRTTGDMRQTKSSKAFDEDTAIFINMSQELKEEGNKLFQRRDHEGAMLKYEKALKLLPRNHIDVAYLRTNMAACYMQMGLG EYPRAIIECNLALEVVPKYSKALLKRARCYEALNRLDLAFRDVNNVLSMEPNNMTGLEILESVMKAMSEKGISFDEKLIGLDNVDETGVARLRKVVKEKV KKKKKISGKGEEKKIGGKVEEKKVENKDKVVVREKKVSPVVKDKEVVMKTIEEEKVVTKDVKEEKVIDKTVKLVFGEDIRMARLPANCSIGLLRDIVRDR FPGLNGVLMKYRDPEGDLITITTNDELRLAESSSGAQGSLRFYVVEVSLDQEPAYEGMEIEEEVHEDAKKTSDVVENGNVGKSVEVEKGSNRIDDWIVQF ARLFKNHVGFDSDSFLDLHELGMKLYSEAMEDTVTSEEAQELFDIAADKFQEMAALALFNWGNVHMSRARKRIFFSEDGSRESVLAQVKIAYEWAKKEYM KAGTRYQEALRIKPDFYEGLLALGQQQFEQAKLCWYHAIGSKIDLESGPCEEVLDLYNKAEDSMERGMQMWEEMEEQRLNGLSKFDKYKDQLQKMDLDGL LRDPSPEEAAEQASNMSSQIYLLWGTMLYERSVVEYKLELPTWEECLEVSVEKFELAGASPTDIAVMIKNHCSNSSALEGLGFKVDEIVQAWNEMYDAKR WEIGVPSFRLEPLFRRRVPKLHDMLEHV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Potri.006G258300 [exp]	0	1
AT4G35890			winged-helix DNA-binding trans...		Potri.005G109400 [exp]	1.00	0.8384
AT5G20600			unknown protein		Potri.012G036500 [exp]	7.34	0.8328
AT4G36520			Chaperone DnaJ-domain superfam...		Potri.002G033800 [exp]	9.74	0.8100	AUL1.3
AT4G25390			Protein kinase superfamily pro...		Potri.012G131900 [exp]	10.81	0.6955
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Potri.015G130900 [exp]	10.95	0.8006
AT1G06530		PMD2	peroxisomal and mitochondrial ...		Potri.002G060200 [exp]	15.58	0.8177
AT1G18800		NRP2	NAP1-related protein 2 (.1)		Potri.012G069100 [exp]	18.49	0.7304
AT3G43590			zinc knuckle (CCHC-type) famil...		Potri.009G155500 [exp]	22.91	0.7873
AT1G20970			unknown protein		Potri.006G191500 [exp]	28.61	0.7889
AT3G59990		MAP2B	methionine aminopeptidase 2B (...		Potri.004G084800 [exp]	30.59	0.7043	Pt-MAP2.2

Compare expression of checked genes

Potri.006G258300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.