Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25270 591 / 0 unknown protein AT2G12400 551 / 0 unknown protein AT1G80540 405 / 4e-136 unknown protein AT1G71110 395 / 7e-132 unknown protein AT5G67550 95 / 2e-20 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G023200 [exp] 908 / 0 AT2G25270 595 / 0.0 unknown protein Potri.018G120200 [exp] 594 / 0 AT2G12400 596 / 0.0 unknown protein Potri.006G060600 [exp] 593 / 0 AT2G12400 579 / 0.0 unknown protein Potri.010G115500 [exp] 387 / 1e-128 AT1G71110 646 / 0.0 unknown protein Potri.007G132601 [exp] 143 / 1e-36 AT5G67550 189 / 8e-54 unknown protein Potri.017G023400 [exp] 135 / 4e-34 AT5G67550 182 / 3e-51 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001945 [exp] 702 / 0 AT2G25270 650 / 0.0 unknown protein Lus10008028 [exp] 565 / 0 AT2G12400 641 / 0.0 unknown protein Lus10008813 [exp] 555 / 0 AT2G12400 616 / 0.0 unknown protein Lus10001929 [exp] 438 / 2e-148 AT2G25270 457 / 3e-156 unknown protein Lus10013492 [exp] 411 / 5e-138 AT1G71110 645 / 0.0 unknown protein Lus10034641 [exp] 365 / 7e-120 AT1G71110 587 / 0.0 unknown protein Lus10007962 [exp] 350 / 1e-114 AT1G71110 578 / 0.0 unknown protein Lus10014341 [exp] 302 / 3e-96 AT2G25270 352 / 7e-116 unknown protein Lus10026050 [exp] 271 / 1e-84 AT2G25270 328 / 4e-107 unknown protein Lus10038102 [exp] 256 / 1e-78 AT2G25270 468 / 5e-161 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G258700.2 pacid=42770261 polypeptide=Potri.006G258700.2.p locus=Potri.006G258700 ID=Potri.006G258700.2.v4.1 annot-version=v4.1 ATGTCATGTCACAGTTTACTTTCATTTACTCTTCTTCTGCTCACCTTTGTCTTCTTTACTTCTTCAACATCCATTCCCTTCTCTGCTCTACCCCCTGCTG TAGCAAGGAGGGAAAATGAAGCTAAGTATGAAGTGGAGTTCTCATGGGGGGCAAGGAGGTCTGTGGTGGAGGCACCCATTAGTGAACCTGTCGAGGACTC ACCAGTACTTGTGTTAGCTCCAAAGAGGACTTACAGAAAAGACCCTCTTAATGATTTCAAAAGATACACCGGAGGATGGAATATCAGTGATCGCCATTAC TGGGCTTCTGTAGGTTTCACCGCAGCTCCTCTGTTTGCTATTGCTGCAATCTGGTTTCTGGTATTTGGGCTGTGCTTGCTGTGTGGTTGCCTTTGTCATT TCTGTTGCAAAAGGCAGAGCTATGGCTACTCTCGAACAGCTTATGCTATCTCCCTCGTTTTCCTCATTCTATTCAGCATATGTGCTATCGTTGGATGTGT TGTTCTATATGCTGCTCAGGAAAGATTTCACAAAAGCACAACAGAAACTTTGGAGTATGTTGTGAATCAAGCAGACACCACTGTCAATAAACTAAAGATT GTGTCAGATTTTATTGCTTCTGCCAAGCTAATCGGAGTTGATCAAGTTTTTCTACCTTCTAATGTCCAAACTGATATTGATCAGATTGGAATAAGAATTA ATTCTTCTGCTAATGTCCTTGCTGACAAAACTGTGGATAATTCGGATGACATACGTGATCTCTTGGATTCTGTGAGAATGGCTCTAATCACTGCTGCTGC CATTATGCTTCTCCTGACATTTCTTGGATTCTTATTTTCAATTTTTGGCATGCAGTTCCTGGTGTACATCCTTGTCATTGTTGGATGGATTATTGTTGCT GGAACTTTCATTTTTTGCGGCACATTCCTTCTTCTCCATAATGTGGCTGGAGATACTTGTGCCGCTATGGATCATTGGGTGCACAGCCCCACTGCTCATA CAGCTTTAGATGATATACTTCCCTGTGTGGACAAAGCAACTACGCAAGACACCTTGTTAAAGAGCAAGGAAATCACTACCCAACTTGTTGAAGTGGTCAA CCAGGTCATCACCAATGTTTCTAATCTTAACTTCTCCCCCAACTTTAAGCCAGTGTACATCAACCAATCTGGTCCGTTGGTACCAATACTATGCAACCCA TTTTATGCCAACTTGACGATCCGGCCATGCAGTGCTGGTGAGGTGGACTTGACCAATGCAACACAGGTATGGAGTAGCTACGTGTGTCAGGTTTCACCGA CTGGGATATGTACCACAACAGGACGTTTGACCCCTACATTCTACAGCCAGATGTCAGCCGCAGTAAACGTGAGCTATGGTTTGAACAATTATGCTCCTTT CCTGGTTGACTTAGGAGACTGCACTTTTGCAAAGGAAACATTCGAAGACATATGTAGGGATCATTGTCCAAGTCTCAGGAGATACAGTAGATGGATATAC ATTGGTTTGGTAATGGTCTCTACTGCAGTTATGCTTTCTCTAATCTTCTGGGTCATATATGGCAGAGAAAGGCGGCACCGTGTGTATTCCAAGCAGCTAG TATCTGAATCAGCACAAGGTCCAGAAAGGGAAAAAAATTCCTGA
AA sequence Show only first row Show all	>Potri.006G258700.2 pacid=42770261 polypeptide=Potri.006G258700.2.p locus=Potri.006G258700 ID=Potri.006G258700.2.v4.1 annot-version=v4.1 MSCHSLLSFTLLLLTFVFFTSSTSIPFSALPPAVARRENEAKYEVEFSWGARRSVVEAPISEPVEDSPVLVLAPKRTYRKDPLNDFKRYTGGWNISDRHY WASVGFTAAPLFAIAAIWFLVFGLCLLCGCLCHFCCKRQSYGYSRTAYAISLVFLILFSICAIVGCVVLYAAQERFHKSTTETLEYVVNQADTTVNKLKI VSDFIASAKLIGVDQVFLPSNVQTDIDQIGIRINSSANVLADKTVDNSDDIRDLLDSVRMALITAAAIMLLLTFLGFLFSIFGMQFLVYILVIVGWIIVA GTFIFCGTFLLLHNVAGDTCAAMDHWVHSPTAHTALDDILPCVDKATTQDTLLKSKEITTQLVEVVNQVITNVSNLNFSPNFKPVYINQSGPLVPILCNP FYANLTIRPCSAGEVDLTNATQVWSSYVCQVSPTGICTTTGRLTPTFYSQMSAAVNVSYGLNNYAPFLVDLGDCTFAKETFEDICRDHCPSLRRYSRWIY IGLVMVSTAVMLSLIFWVIYGRERRHRVYSKQLVSESAQGPEREKNS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25270			unknown protein		Potri.006G258700 [exp]	0	1
AT1G01225			NC domain-containing protein-r...		Potri.014G101300 [exp]	1.73	0.9338
AT5G55230		ATMAP65-1	microtubule-associated protein...		Potri.011G092500 [exp]	2.82	0.9243
AT5G14390			alpha/beta-Hydrolases superfam...		Potri.001G340000 [exp]	3.00	0.8987
AT2G24290			Protein of unknown function (D...		Potri.013G026900 [exp]	3.16	0.9132
AT3G54030			Protein kinase protein with te...		Potri.016G105800 [exp]	3.46	0.9229
AT1G32860			Glycosyl hydrolase superfamily...		Potri.011G152400 [exp]	3.74	0.9075
AT5G02030	HD	PNY, BLR, BLH9,...	VAAMANA, REPLUMLESS, PENNYWISE...		Potri.008G061000 [exp]	4.00	0.9019
AT3G53190			Pectin lyase-like superfamily ...		Potri.006G122000 [exp]	4.47	0.9160
AT2G15730			P-loop containing nucleoside t...		Potri.009G105200 [exp]	6.00	0.8914
AT2G43200			S-adenosyl-L-methionine-depend...		Potri.007G123500 [exp]	6.24	0.8912

Compare expression of checked genes

Potri.006G258700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.