Plant FIBer expression Database

Potri.006G258800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G25265 577 / 0 unknown protein
AT2G25260 507 / 0 unknown protein
AT5G13500 450 / 3e-159 unknown protein
AT3G01720 64 / 5e-11 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G023100
[exp]
664 / 0 AT5G25265 583 / 0.0 unknown protein
Potri.001G028100
[exp]
461 / 2e-163 AT5G13500 570 / 0.0 unknown protein
Potri.003G195600
[exp]
440 / 4e-155 AT5G13500 532 / 0.0 unknown protein
Potri.009G070000
[exp]
439 / 1e-154 AT5G13500 515 / 0.0 unknown protein
Potri.001G275600
[exp]
437 / 6e-154 AT5G13500 543 / 0.0 unknown protein
Potri.001G336400
[exp]
64 / 6e-11 AT3G01720 1215 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041028
[exp]
625 / 0 AT5G25265 618 / 0.0 unknown protein
Lus10005347
[exp]
625 / 0 AT5G25265 612 / 0.0 unknown protein
Lus10009691
[exp]
444 / 7e-157 AT5G13500 541 / 0.0 unknown protein
Lus10036037
[exp]
443 / 2e-156 AT5G13500 542 / 0.0 unknown protein
Lus10014878
[exp]
56 / 3e-08 AT3G01720 1197 / 0.0 unknown protein
Lus10022320
[exp]
55 / 8e-08 AT3G01720 1181 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Potri.006G258800.1 pacid=42770494 polypeptide=Potri.006G258800.1.p locus=Potri.006G258800 ID=Potri.006G258800.1.v4.1 annot-version=v4.1
ATGGGTTGTGGGGATCTCTTCTTTTCACTGCTTATAACCTTCTCAGCAGCCCTTATAACATACAATATCCTTATATCAGCAAATGCACCACTTAAGCAAG
AACTACCGGGTCCATCATCAAGATCATCACTTTTAGTTGACCCAATTATCAAGATGCCATTCGGAAGATCAAGTTTTGGTAAAAAGAGACTGTTTCATAC
AGCTGTGACAGCTTCTGATTCTGTGTATAATACTTGGCAGTGTAGGGTGATGTATTATTGGTACAAGAAGCATAAAGATGGACCCAATAGTGAAATGGGT
GGGTTTACTAGGATCTTGCATTCTGGAAAGCCTGACAAGTTTATGGAGGAAATCCCGACTTTTATAGCACAGCCTTTGCCTTCTGGGATGGATCAGGGCT
ATATAGTTCTCAACAGACCTTGGGCATTTGTGCAATGGCTTCAAAAAGCAGACATAAAAGAAGATTACATACTGATGGCAGAGCCAGATCATATTATTGT
TAAGCCCATCCCAAACCTATCTAAAGATGGCCTTGGAGCTGCATTTCCTTTCTTTTACATTGAACCTAAAAAGTATGAATCTGTCCTCCGAAAGTACTTC
CCTGAGGATAAGGGACCGATAACAACCATCGACCCCATAGGAAATTCTCCTGTCATTGTTGGAAAGGAATCTCTTAAGAAGATTGCTCCCACTTGGATGA
ATATCTCCTTAGCAATGAAAAAGGATCCTGAAACAGATAAAGCTTTTGGCTGGGTGCTTGAAATGTATGCTTATGCTGTTTCATCTGCTCTACATGGTGT
TGGTAACATCCTGTACAAGGACTTCATGATTCAGCCTCCGTGGGATACAGAAATTGGCAAGAAGTTCATCATTCATTACACTTATGGATGTGACTATGAT
ATGAAGGGTAAATTAACCTATGGAAAGATTGGAGAATGGAGGTTTGACAAAAGGTCATATGATAATGTTGCACCCCCAAGAAACCTTCCCTTGCCTCCAC
CGGGTGTTCCAGATAGTGTGGTTACTCTGGTGAAAATGGTGAATGAAGCTACTTCAAACATTCCAAATTGGGGATCCTAA
AA sequence
>Potri.006G258800.1 pacid=42770494 polypeptide=Potri.006G258800.1.p locus=Potri.006G258800 ID=Potri.006G258800.1.v4.1 annot-version=v4.1
MGCGDLFFSLLITFSAALITYNILISANAPLKQELPGPSSRSSLLVDPIIKMPFGRSSFGKKRLFHTAVTASDSVYNTWQCRVMYYWYKKHKDGPNSEMG
GFTRILHSGKPDKFMEEIPTFIAQPLPSGMDQGYIVLNRPWAFVQWLQKADIKEDYILMAEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYESVLRKYF
PEDKGPITTIDPIGNSPVIVGKESLKKIAPTWMNISLAMKKDPETDKAFGWVLEMYAYAVSSALHGVGNILYKDFMIQPPWDTEIGKKFIIHYTYGCDYD
MKGKLTYGKIGEWRFDKRSYDNVAPPRNLPLPPPGVPDSVVTLVKMVNEATSNIPNWGS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G25265 unknown protein Potri.006G258800
[exp]
0 1
AT5G05980 ATDFB, FPGS1 folylpolyglutamate synthetase ... Potri.010G197800
[exp]
4.47 0.6802 FPGS3,Pt-ATDFB.2
AT1G52280 AtRABG3d RAB GTPase homolog G3D (.1) Potri.003G053400
[exp]
7.07 0.7331
AT1G11020 RING/FYVE/PHD zinc finger supe... Potri.018G073400
[exp]
8.83 0.6884
AT4G35230 BSK1 BR-signaling kinase 1 (.1) Potri.005G249300
[exp]
12.24 0.6699
AT2G21600 ATRER1B endoplasmatic reticulum retrie... Potri.005G228900
[exp]
20.85 0.6874 RER1.4
AT3G52660 RNA-binding (RRM/RBD/RNP motif... Potri.009G163400
[exp]
24.39 0.6958
AT3G20920 translocation protein-related ... Potri.001G257500
[exp]
35.29 0.6882
AT1G27980 DPL1, ATDPL1 dihydrosphingosine phosphate l... Potri.003G168800
[exp]
39.26 0.6952
AT3G28730 NFD, SSRP1, ATH... NUCLEOSOME/CHROMATIN ASSEMBLY ... Potri.004G124000
[exp]
39.34 0.6594 ATHMG.2
AT5G51570 SPFH/Band 7/PHB domain-contain... Potri.012G129000
[exp]
43.88 0.6914

Potri.006G258800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.