Plant FIBer expression Database

Potri.006G258900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G25260 704 / 0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
AT5G25250 699 / 0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
AT5G64870 634 / 0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G022900
[exp]
895 / 0 AT5G25260 703 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001929
[exp]
151 / 9e-40 AT2G25270 457 / 3e-156 unknown protein
Lus10001944
[exp]
112 / 5e-30 AT5G25250 87 / 1e-21 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0433 SPFH PF01145 Band_7 SPFH domain / Band 7 family
Representative CDS sequence
>Potri.006G258900.1 pacid=42767681 polypeptide=Potri.006G258900.1.p locus=Potri.006G258900 ID=Potri.006G258900.1.v4.1 annot-version=v4.1
ATGTTGTATAAAGTTGCTAGCCCGTCGGAGTATCTGGTGATAACCGGAGTTGGCATCTCAGACATAAAGCTTGCCAAAAAGGGATGGATCCTCCCCGGCC
AGTCGTGTTCTGTCTTCGATGTTTCACCGGTCAACTACACCTTCGAAGTCCAAGCTATGAGTGCAGAGAAGCTCCCTTTTGTCCTTCCTGCTGTCTTCAC
TATTGGCCCTCGTGTAGATGATGAGCAAAGCCTCTTCAGATACGCGAAGCTAATATCTCCACACGACAAACTTTCTAACCATGTTAAAGAGCTTGTCCAG
GGTATCATTGAAGGTGAAACTAGAGTCCTCGCTGCTTCCATGACCATGGAAGAGATTTTCAAAGGAACTAAAGACTTTAAACAGGAAGTGTTTGAGAAAG
TTCAGCTTGAACTTAATCAGTTTGGATTGTTAATATATAATGCTAATGTTAAACAACTTGTCGATGTTCCTGGGCATGAGTACTTCTCTTACTTGGGTCA
AAAGACTCAAATGGAGGCTGCAAATCAAGCTAGAATTGATGTAGCAGAGGCGAAAATGAAGGGAGAGATAGGATCAAAGCAAAGGGAAGGTCGGACACAA
CAAAATGCGGCGAAAATCGATGCAGAAACGAAGATAATAGCGACACAACGACAAGGAGATGGGAAGAAGGAGGAGATAAAGGTGAAGACTGAGGTTAAGA
TTTATGAGAACCATAGAGAAGCAGAGGTTGCAGAGGCCAACGCTGATTTGGCAAAGAAGAAGGCCGGATGGTCCATGGAGGCGCAGGTGGCAGAGGTGGA
AGCAACAAAGGCTGTGTCACTGAGGGATGCTGAATTGCAAATGGAGGTGGAGAGAATGAATGCTTTGACTAGAACTGAGAAGCTTAAGGCTGAGTTTCTA
AGCAAGGCTAGTGTGGAGTATGAAACCAAGGTTCAAGAAGCAAACTGGGAGCTGTATAGGAAACAGAAAGCAGCAGAAGCAATTCTCTACGAAAAGGAGA
AAGAGGCTGATGCACAAAAAGCAATAGCAGATGCAACATTCTATTCCAGACAACAAGTTGCTGATGGAGAACTATATGCCAAGCAAAAGGAAGCTGAAGG
GCTTGTAGCACTTGCACAAGCACAAGGAGTCTATCTACGCACCCTTCTAGACGCATTAGGCGGCAATTATGCTGCATTAAGAGATTACTTAATGATCAAC
AGCGGAATGTATCGAGAGATTGCTAAGATAAACTCAGACGCAGTTCAAGGGCTGCAGCCAAAAATCAGCATTTGGACTAATGGAAACAGCGGGGAGACAA
ACGATGGAGCTGGGGCAGGCAATGCAATGAAGGAGGTTGCTGGAGTTTATAAGATGCTACCACCATTGTTTCAGACTGTTCAAGAGCAAACTGGAATGCT
GCCACCGGCATGGATGGGCTCATTAACCGACTCTAGCAACTCTAATGTGAAATGA
AA sequence
>Potri.006G258900.1 pacid=42767681 polypeptide=Potri.006G258900.1.p locus=Potri.006G258900 ID=Potri.006G258900.1.v4.1 annot-version=v4.1
MLYKVASPSEYLVITGVGISDIKLAKKGWILPGQSCSVFDVSPVNYTFEVQAMSAEKLPFVLPAVFTIGPRVDDEQSLFRYAKLISPHDKLSNHVKELVQ
GIIEGETRVLAASMTMEEIFKGTKDFKQEVFEKVQLELNQFGLLIYNANVKQLVDVPGHEYFSYLGQKTQMEAANQARIDVAEAKMKGEIGSKQREGRTQ
QNAAKIDAETKIIATQRQGDGKKEEIKVKTEVKIYENHREAEVAEANADLAKKKAGWSMEAQVAEVEATKAVSLRDAELQMEVERMNALTRTEKLKAEFL
SKASVEYETKVQEANWELYRKQKAAEAILYEKEKEADAQKAIADATFYSRQQVADGELYAKQKEAEGLVALAQAQGVYLRTLLDALGGNYAALRDYLMIN
SGMYREIAKINSDAVQGLQPKISIWTNGNSGETNDGAGAGNAMKEVAGVYKMLPPLFQTVQEQTGMLPPAWMGSLTDSSNSNVK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G25260 SPFH/Band 7/PHB domain-contain... Potri.006G258900
[exp]
0 1
AT3G62270 HCO3- transporter family (.1) Potri.015G077600
[exp]
2.23 0.9083
AT1G07300 josephin protein-related (.1) Potri.009G043501
[exp]
4.69 0.8349
AT3G46620 zinc finger (C3HC4-type RING f... Potri.006G164516
[exp]
5.47 0.8820
Potri.002G068501
[exp]
6.32 0.8744
AT1G21740 Protein of unknown function (D... Potri.004G177200
[exp]
6.48 0.8791
AT3G12750 ZIP1 zinc transporter 1 precursor (... Potri.010G173300
[exp]
6.70 0.8730 ZIP1.1
AT3G14840 Leucine-rich repeat transmembr... Potri.001G385500
[exp]
9.79 0.8566
AT2G44930 Plant protein of unknown funct... Potri.014G054100
[exp]
9.94 0.8671
AT4G19380 Long-chain fatty alcohol dehyd... Potri.004G234900
[exp]
10.48 0.8680
AT5G17680 disease resistance protein (TI... Potri.019G070700
[exp]
11.95 0.8536

Potri.006G258900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.