Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25240 47 / 2e-07 unknown protein AT5G14890 43 / 4e-05 NHL domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G114200 [exp] 63 / 4e-13 AT5G62865 57 / 1e-10 unknown protein Potri.006G190100 [exp] 53 / 1e-09 AT5G25240 64 / 3e-14 unknown protein Potri.001G132100 [exp] 50 / 2e-08 AT3G01430 122 / 7e-36 unknown protein Potri.015G073800 [exp] 50 / 5e-08 AT5G62865 87 / 5e-22 unknown protein Potri.012G078300 [exp] 48 / 2e-07 AT5G62865 77 / 6e-18 unknown protein Potri.003G101300 [exp] 45 / 2e-06 AT5G14890 125 / 6e-34 NHL domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001942 [exp] 74 / 4e-17 AT5G14890 79 / 1e-17 NHL domain-containing protein (.1) Lus10001933 [exp] 73 / 1e-16 AT5G14890 78 / 4e-17 NHL domain-containing protein (.1) Lus10001932 [exp] 73 / 1e-16 AT5G14890 76 / 1e-17 NHL domain-containing protein (.1) Lus10006290 [exp] 59 / 1e-11 AT5G25240 67 / 5e-15 unknown protein Lus10033413 [exp] 56 / 4e-10 AT5G14890 96 / 3e-23 NHL domain-containing protein (.1) Lus10003184 [exp] 49 / 3e-07 AT1G04700 94 / 3e-21 PB1 domain-containing protein tyrosine kinase (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G259300.1 pacid=42770513 polypeptide=Potri.006G259300.1.p locus=Potri.006G259300 ID=Potri.006G259300.1.v4.1 annot-version=v4.1 ATGGAATCCATTGGTGAAAGCTCACCACTAGTAGACACCCTTTATGCTGAAGATTACGAAGAGGCAGTCACTTCTTCTTGTTGTGGCTGTTTTCAAGGCT TTTGTTGTCGGCCGCGACGAGGAAGCAGCAATGGCATGGAGAGAAACCTAATGCTTAAACAAGAAGAGGTGACGATAAAAGATGGTTGGTTGGTGGAGAA GGTGAAGAGAGTTAAAGAGATATCAGAAATCTTGGCAGGACCAAAGTGGAAGAATTTTATAAGGAGGTTTAGCAATAATAACAAGAAAAGATCAAGAATG CAATGTCAATATGATCCTCAAAGTTATGCTCTCAACTTTGATGAAGGATTTGGTAGGGAAGTTGATTCTGAATATCCTGATTTTTCAGCAAGATATGCGG CTCCAGTTGTGATTAGCAAGGGAGAGTTGGCACATGATACGGCTGTTTTTCAGCTTTAG
AA sequence Show only first row Show all	>Potri.006G259300.1 pacid=42770513 polypeptide=Potri.006G259300.1.p locus=Potri.006G259300 ID=Potri.006G259300.1.v4.1 annot-version=v4.1 MESIGESSPLVDTLYAEDYEEAVTSSCCGCFQGFCCRPRRGSSNGMERNLMLKQEEVTIKDGWLVEKVKRVKEISEILAGPKWKNFIRRFSNNNKKRSRM QCQYDPQSYALNFDEGFGREVDSEYPDFSARYAAPVVISKGELAHDTAVFQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25240			unknown protein		Potri.006G259300 [exp]	0	1
AT5G58375			Methyltransferase-related prot...		Potri.013G155800 [exp]	1.41	0.9234
					Potri.013G156300 [exp]	2.00	0.9222
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Potri.005G038800 [exp]	3.16	0.9124
AT2G43330		ATINT1	inositol transporter 1 (.1)		Potri.017G032400 [exp]	4.00	0.8974
AT1G34350			unknown protein		Potri.019G085500 [exp]	4.47	0.9145
AT5G25050			Major facilitator superfamily ...		Potri.018G017100 [exp]	5.00	0.8781
AT3G15150		HPY2, ATMMS21	HIGH PLOIDY2, A. THALIANA METH...		Potri.011G141200 [exp]	5.47	0.8921
AT2G28370			Uncharacterised protein family...		Potri.004G211400 [exp]	6.00	0.8955
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Potri.001G045500 [exp]	6.32	0.8848
AT1G63260		TET10	tetraspanin10 (.1.2.3)		Potri.001G107200 [exp]	7.14	0.8869

Compare expression of checked genes

Potri.006G259300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.