Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11040 1761 / 0 AtTRS120 TRS120 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G022500 [exp] 2193 / 0 AT5G11040 1758 / 0.0 TRS120 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008127 [exp] 1815 / 0 AT5G11040 1804 / 0.0 TRS120 (.1) Lus10013164 [exp] 1675 / 0 AT5G11040 1683 / 0.0 TRS120 (.1) Lus10002132 [exp] 45 / 5e-05 AT1G79440 56 / 9e-10 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08626 [poplar] [flax] TRAPPC9-Trs120 Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit
Representative CDS sequence Show only first row Show all	>Potri.006G259500.1 pacid=42768528 polypeptide=Potri.006G259500.1.p locus=Potri.006G259500 ID=Potri.006G259500.1.v4.1 annot-version=v4.1 ATGGAACCAGACGTGAGCATAGAAACCTTCTCCATGATCCGAATCGCCATCCTCCCAATCGGCAAAATCCCTCACCAAACCCTACGTGACTATTACTCAA TGTTCCTTCACCAACACACAATCCCACTCTCGTCAATCTCTTCCTTCTACACTGAAGAACAAAAATCACCATTCACTAACCAACCTTGGGATACCGGTTC GCTCCGGTTCAAATTCATTCTCGGCGGTTCGCCGCCCAGTCCTTGGGAAGATTTCCAGTCAAATCGTAAGATCTTGGCTGTTATTGGTGTTTGTCATTGT CCGTTATCGCCCGATCTTGATTCAGTTATCGAAGAGTTTAATGGAGTTTGTAAAGGTTACGCTTCTGCGCGTGTTACTCGCTGTTTCGGTTTTTTGCCTT GTGATTCTCAGTTAGAGGATGGTGGTAAAAAGGGGGATAATTTGAGATTGTTTCCACCAGCAGATCGTCAAACGCAGGAGATGCATTTGCAGACAATGAT GCAAGAGATAGCAGCTTCATTGTTGATGGAATTTGAGAAGTATGTTTTTCAAGCGGAATCTTCTGGAACTATACTCAAGACGCCTTTGGATTCGCAAGCT AGTTTAAGCTCAGAGGAGGTGATCAAGGCAAAAAAGCGAAGGCTTGGTCGTGTGCAAAAGACTATAGGGGATTATTGTTTATTGGCAGGATCACCTGTTG ATGCCAATGCTCACTATTCTACTGCATTGGAACTAGCCAGACTGACTACGGATTACTTCTGGTATGCTGGAGCATTGGAGGGTAGCATTTGTGCCTTACT GATAGACCCGATAAGCCAAATCAATCCAGCTTTAGAGGATGAAGTTAGGTACCGGTACAACAGTGTGATATTGCATTACAAGAAGTCATTTATACAAGAG AGTGCCCAGAGGGTTTCACCTTTAAGCTTTGAACTTGAAGCAAATTTGAAATTGGCAAGATATCTTTGCAGAAGAGAACTGGCTAAGGAAGCAGTAGAGT TGTTGACAAGTGCTGCAGATGGTGCAAAATCTTTGATCGATGCCACTGATAGACTCATATTATATGTTGAAATAGCTCGTTTATTTGGAACTCTTGGTTA CCAGAGGAAAGCTGCCTTTTTTTCTAGGCAGGTCGCTCAGTTGTATCTGCAACAAGACAACAAATTGGCTGCTATTAGTGCTTTGCAAGTTTTGGCATTG ACCACCAAAGCATATTGTGTTCAGAGCAGAGCATCAATCTCTGATAATTCTCATATCAACGAGGTTGGATCAAGTCATGCTGATAGTGGGAAAATGCATC ACCAGTCAGTAGTTTCTTTATTTGAGTCTCAATGGAGCACGCTCCAAATGGTTGTGCTGAGGGAGATACTGCTATCTGCTGTTCGTGCAGGAGATCCTCT TGCTGCTTGGAGTGCTGCTGCTCGGCTTCTAAGGTCATATTACCCTCTAATCACACCTGTTGGACAAAATGGCCTTGCTCGTGCACTTGCTAATTCATCT GAGAGGTTGCCTTATGGGACTCGATCCAGTGATCCTGCCTTACCTTTTGTAAGGCTGTATTCTTTTCCTCTACATTCCTCTCAAATGGACATTGTTAAAC GCAATCCAGCAAGAGAAGATTGGTGGGCTGGATCTGCTCCTTCAGGGCCTTTTATTTATACACCATTTAGCAAAGGGGAACCAAATGATAGCAGCAAGAA GGAGCTGATTTGGATTGTTGGAGAACCAGTCCAGATTTTAGTGGAGTTGGCAAACCCATGTGGCTTTAATTTAAAGGTTGATAGTATATACTTATCAGTG CATTCAGGAAATTTGGATCCTTTTCCCATCAGTGTAGATCTCCCTCCTAATTCATCGAAGGTGATCACCTTATCTGGAATCCCAACTTCAGTGGGGCTAG TGATGCTTCCAGGGTGCATTGTTCATTGTTTTGGTGTTATTACTGAACACCTCTTCAGGGATGTAGATAATTTGCTCCATGGTGCAGCAGAAGGACTTGT GCTTTCTGACCCATTCAGATCTTGTGGTTCTCTAAGGTTGAAAAATGTACCTGTCCCAAATATTTCTGTTGTACCACCACTGCCTTTGCTAGTTTCACAT TTTGTAGGGGGTGATGGTGCCATAATTTTATATGAAGGTGAGATACGTGACATCTATATTAGTCTGGCTAATGCAGGCACTGTTCCAGTTGAACAGGCAC ATATTTCACTCTCAGGAAAAAACCAAGATTCTGTTCTCTCAATTCCATATGAAACTCTAAATTCTGTTCTTCCTTTAAAACCTGGTGCCGAGGTGATCCT ACCTGTGACCTTGAAGGCCTGGAAGCTCGGGTTAGTGGACCTTGATAATGCTTCTGGAAGCATGGGAAGGCAGTTGAAGGACAGTAGTAGCCCCTCGCTG CTGATTCATTATGCGGGGCCGTTAACAGATTGTGAAGATCCTCCAAAAGGATCTGCTGTGCCTCCTGGTAGACGCTTGGTTGTCCCCTTGAACATATGTG TTTTGCAAGGTTTGTCTTTTGTAAAGGCTCGTTTGCTGTCGATGGAAATTCCTGCTCATGTTGGTGAAAATCTTCCAAAACCAGTTTATGTGGAGAATAG TGCTAGTAAAGAAGCTAATGTTTCTGAAACAAAGATGGATGGATTGGTAAAGATTGATCCTTTCAGGGGAAGTTGGGGACTGCGATTTCTGGAACTAGAA TTGTCTAATCCAACTGATGTTGTGTTTGAAATCAGTGTCTCTGTCCAGGTGGATAGCACTGATGACAAGCTTACTGTTGGTCAAGATGCTACTGTATATG GTTATCCAAAAACAAGAATCGATAGGGATTTCTCTGCTAGGGTATTAATACCACTGGAGCATTTTAAATTACCTATCCTTGATGGTTCTTTTTTCATGAA GGATTTTAAGCCTGATGAGGCTGCTGGCAGCAGAAATTCAAGCTTTTCAGAAAAGAGTGCCAAGGCTGAACTAAAAGCTTCTATTAATAATCTGATATCC AGGATAAAGGTCCGATGGCAATCAGGCCGGAACAGCTCTGGAGAATTAAATACCAAGGATGCCATACAGTCTGCGCTTAAGACATCTGCTATGGACGTGC TGCTACCAGATCCATTGACATTTGGCTTCAGGCTTGTTAGAAACAATCTCTCACAAGAATCCAATGACTCTAGGCCTAAAGGTTCTGTTTTGGCACATGA CATGACTCCCATGGAAGTTCTGGTTCGCAATAACACCAAGGAAATGATCAGGATGAGTCTTAGTATTACATGCAGGGATGTGGCTGGAGAGAATTGCGTT GAGGATACCAAGGCTACTGTCTTGTGGTCTGGTGTTCTGAATGGAATAACCATAGAGGCTCCTCCCCTTAAAGAATCTAAGCATTCTTTCTCTTTGTATT TCCTTGTACCTGGGGAGTACACTCTAGTAGCTGCTGCTGTGGTTGAAGATGCTAATGACATCCTCAGGGCTCGTGCGAAAACCAATTCACCTGATGAACC AATATTCTGTCGCGGCCCCCCATTCCGTGTCCGTGTCATTGGGACGGCATGA
AA sequence Show only first row Show all	>Potri.006G259500.1 pacid=42768528 polypeptide=Potri.006G259500.1.p locus=Potri.006G259500 ID=Potri.006G259500.1.v4.1 annot-version=v4.1 MEPDVSIETFSMIRIAILPIGKIPHQTLRDYYSMFLHQHTIPLSSISSFYTEEQKSPFTNQPWDTGSLRFKFILGGSPPSPWEDFQSNRKILAVIGVCHC PLSPDLDSVIEEFNGVCKGYASARVTRCFGFLPCDSQLEDGGKKGDNLRLFPPADRQTQEMHLQTMMQEIAASLLMEFEKYVFQAESSGTILKTPLDSQA SLSSEEVIKAKKRRLGRVQKTIGDYCLLAGSPVDANAHYSTALELARLTTDYFWYAGALEGSICALLIDPISQINPALEDEVRYRYNSVILHYKKSFIQE SAQRVSPLSFELEANLKLARYLCRRELAKEAVELLTSAADGAKSLIDATDRLILYVEIARLFGTLGYQRKAAFFSRQVAQLYLQQDNKLAAISALQVLAL TTKAYCVQSRASISDNSHINEVGSSHADSGKMHHQSVVSLFESQWSTLQMVVLREILLSAVRAGDPLAAWSAAARLLRSYYPLITPVGQNGLARALANSS ERLPYGTRSSDPALPFVRLYSFPLHSSQMDIVKRNPAREDWWAGSAPSGPFIYTPFSKGEPNDSSKKELIWIVGEPVQILVELANPCGFNLKVDSIYLSV HSGNLDPFPISVDLPPNSSKVITLSGIPTSVGLVMLPGCIVHCFGVITEHLFRDVDNLLHGAAEGLVLSDPFRSCGSLRLKNVPVPNISVVPPLPLLVSH FVGGDGAIILYEGEIRDIYISLANAGTVPVEQAHISLSGKNQDSVLSIPYETLNSVLPLKPGAEVILPVTLKAWKLGLVDLDNASGSMGRQLKDSSSPSL LIHYAGPLTDCEDPPKGSAVPPGRRLVVPLNICVLQGLSFVKARLLSMEIPAHVGENLPKPVYVENSASKEANVSETKMDGLVKIDPFRGSWGLRFLELE LSNPTDVVFEISVSVQVDSTDDKLTVGQDATVYGYPKTRIDRDFSARVLIPLEHFKLPILDGSFFMKDFKPDEAAGSRNSSFSEKSAKAELKASINNLIS RIKVRWQSGRNSSGELNTKDAIQSALKTSAMDVLLPDPLTFGFRLVRNNLSQESNDSRPKGSVLAHDMTPMEVLVRNNTKEMIRMSLSITCRDVAGENCV EDTKATVLWSGVLNGITIEAPPLKESKHSFSLYFLVPGEYTLVAAAVVEDANDILRARAKTNSPDEPIFCRGPPFRVRVIGTA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11040		AtTRS120	TRS120 (.1)		Potri.006G259500 [exp]	0	1
AT2G21520			Sec14p-like phosphatidylinosit...		Potri.009G119500 [exp]	2.82	0.8764
AT5G50530			CBS / octicosapeptide/Phox/Bem...		Potri.015G098100 [exp]	9.16	0.7997
AT1G80280			alpha/beta-Hydrolases superfam...		Potri.001G174900 [exp]	10.19	0.8276
AT5G03250			Phototropic-responsive NPH3 fa...		Potri.010G223600 [exp]	10.95	0.7759
AT5G11040		AtTRS120	TRS120 (.1)		Potri.018G022500 [exp]	11.83	0.8157
AT5G55970			RING/U-box superfamily protein...		Potri.011G094800 [exp]	18.02	0.8237
AT5G18410		ATSRA1, KLK, PI...	PIROGI 121, PIROGI, KLUNKER, t...		Potri.019G025200 [exp]	18.33	0.8207
AT5G18410		ATSRA1, KLK, PI...	PIROGI 121, PIROGI, KLUNKER, t...		Potri.013G051200 [exp]	19.23	0.8055
AT2G27900			unknown protein		Potri.009G002900 [exp]	20.49	0.7578
AT5G23720		PHS1	PROPYZAMIDE-HYPERSENSITIVE 1, ...		Potri.015G105000 [exp]	21.35	0.8092	Pt-PHS1.2

Compare expression of checked genes

Potri.006G259500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.