Plant FIBer expression Database

Potri.006G259600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G11030 491 / 1e-167 ALF4 aberrant lateral root formation 4 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041030
[exp]
599 / 0 AT2G19800 448 / 1e-151 myo-inositol oxygenase 2 (.1)
Lus10006197
[exp]
179 / 1e-51 AT5G11030 122 / 3e-31 aberrant lateral root formation 4 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF08568 Kinetochor_Ybp2 Uncharacterised protein family, YAP/Alf4/glomulin
Representative CDS sequence
>Potri.006G259600.3 pacid=42767563 polypeptide=Potri.006G259600.3.p locus=Potri.006G259600 ID=Potri.006G259600.3.v4.1 annot-version=v4.1
ATGGCAACAGAAACCAGTGAGCATCACGAACCCTCCTCCTCCTCCTCCTCTACGACCACTAAGAATCCTCTAGTTCTTCATCTTCACGAGAAACTCTCAT
CTTGCTCCACTTTGATTGAAAGTGGAGATGAGAAATCAGTAGCAGAGCTGGTAGATTTTATAGATTCAGTTTCCGATTCTGCTGTATCGAATCATGAAGA
CAGTGATGAACAGGGCAATGCAGTTGAAGTTCTCTCCGAAACTCATAAATTTTTGCTTTCTCCGTCGCTAGATCAGGCGGTTATTGATGCGTTATCATTT
GAATTACCGAAGGCAGTATCGAAGTTTGCAGGATTGTCGAATGAGTGCTTGAGGATTGCTGATAGTATTATTGATTTTTTCATTGAAAACTGTAGTCCAC
GGGATATGCTTCCCATTCTTTGTGAGGCATTAGATTCGTGGAATGGGATGGTTCATGCATATGACTTTGTTGCTCCTCTTCTAAGTGGGATCTCAAAAGT
ATTGCTTGCCATACAGAGGCGCCACTTCGAGCAAGTAAAAGTTGCAGTTCCTGTCATCCTAAATGTTTTGAAGGCTGTGTGTTCAGAGTTCAGTGCCAGG
GATACAGAATGTATGAATTTGTTTATCAGAGCCTTAGGAATTGCTGATTCTATACGAGCAATTTGTGCAAAATTGGAGGGCAGAGTACTTGAAAAGCTTC
GAGATGTACTTAGTTCATACATTTTACAAATCATGGCTCTTCTTTCTCTTGTCTTAGGATGTGAAATTCCAAGATGCCTTCCCCTGGTGTCACGGCTGTC
AGAATTCTTCCCATTTTGTGGTTTATCATATCTCGGTTTAATAACTGGATCTGATGTTGATGAAATGACTCGCACTTTTGTTGCAGAAGAGGAGGATGAT
TATATGAGGTGTTTATCCTACATCAAACATGGTGCAGCAATTTCAGTGATCTGGGGTCATATCTCTGTTAATGTTGCTCGGGCTGCTGGGGGGGATGTGT
CAACTGTCAAGGATGAAATTCTAAGTAACCAAACTGAGAGGTGGCAAGCCGTAGGCATGTTAAAGTACATATTCTCATTTGTCGATTTCCCCTGGGAATT
AAAGAAACATGCCATTGACTTCTTGCTTTGCATTACTGATGGAAATATCGCAAGAAACTGCAATGACGAAGACACTGACTGCTCTATATATATGCCTAAT
CTCTATGCTGCTTTGCAGGCTATTACAATGGTCATCATGTATACACCAGATACCGTGCTAAGAAAGAACGCCTTCGAAGCATTGAAAAGGGTACTCGCTG
ATATTCCAACTTCTCAGAGGTTTGAAATATTTCAAGCTTTGATTACAAATAGCATGTCTTCTCCTATGACTGCACTTCTTTTAGATCTTGTTAGAAGCGA
TTTGTATAAGGAAGGTTTCCAAAGAACAGCAACAGGGAAAGACGAAGAAAAGCAAGCAAATAAAGCTGCACCACTATGGGTTGCTCGTGCCCTTGAATTG
GTAGAGCTAGTTTTCAGGCCTCCAAAGGGAGGACCTCCATCCTTTCCTGAGCATGGTGATGCGGTTCTAGCTGCCCTCAACCTGTACAGATTTATTTTGA
TGACAGAATCAGCAGGGAAAACCAACTACACTGGAGTTCTCTCCAAGAAAAATTTAGAGAAAGCATTCAACGAATGGCTCCTACCACTTCGAGCCCTTGT
GGCTGGCATCATGGCAGAGAACAAGGATGATCATGATCCATTAGTAATGGACACAGTATGTTCTCTTAATCCTATTGAGCTTGTTCTATATCGTTGTATC
GAACTAGTTGAAGATAAATTAAAACATCCAGCATAA
AA sequence
>Potri.006G259600.3 pacid=42767563 polypeptide=Potri.006G259600.3.p locus=Potri.006G259600 ID=Potri.006G259600.3.v4.1 annot-version=v4.1
MATETSEHHEPSSSSSSTTTKNPLVLHLHEKLSSCSTLIESGDEKSVAELVDFIDSVSDSAVSNHEDSDEQGNAVEVLSETHKFLLSPSLDQAVIDALSF
ELPKAVSKFAGLSNECLRIADSIIDFFIENCSPRDMLPILCEALDSWNGMVHAYDFVAPLLSGISKVLLAIQRRHFEQVKVAVPVILNVLKAVCSEFSAR
DTECMNLFIRALGIADSIRAICAKLEGRVLEKLRDVLSSYILQIMALLSLVLGCEIPRCLPLVSRLSEFFPFCGLSYLGLITGSDVDEMTRTFVAEEEDD
YMRCLSYIKHGAAISVIWGHISVNVARAAGGDVSTVKDEILSNQTERWQAVGMLKYIFSFVDFPWELKKHAIDFLLCITDGNIARNCNDEDTDCSIYMPN
LYAALQAITMVIMYTPDTVLRKNAFEALKRVLADIPTSQRFEIFQALITNSMSSPMTALLLDLVRSDLYKEGFQRTATGKDEEKQANKAAPLWVARALEL
VELVFRPPKGGPPSFPEHGDAVLAALNLYRFILMTESAGKTNYTGVLSKKNLEKAFNEWLLPLRALVAGIMAENKDDHDPLVMDTVCSLNPIELVLYRCI
ELVEDKLKHPA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G11030 ALF4 aberrant lateral root formatio... Potri.006G259600
[exp]
0 1
AT2G21240 BBR_BPC BPC4, BBR/BPC4,... basic pentacysteine 4 (.1.2) Potri.004G163700
[exp]
7.74 0.5832
AT3G26410 TRM11, AtTRM11 tRNA modification 11, methyltr... Potri.003G022701
[exp]
17.94 0.5784
AT1G54115 ATCCX4 cation calcium exchanger 4 (.1... Potri.001G167200
[exp]
23.55 0.5661
AT3G58500 PP2A-4, EP7, PP... protein phosphatase 2A-4 (.1) Potri.016G062000
[exp]
27.44 0.5695
AT1G19690 NAD(P)-binding Rossmann-fold s... Potri.002G031500
[exp]
28.91 0.5674
AT1G16010 AtMRS2-1, AtMGT... magnesium transporter 2 (.1.2.... Potri.003G183600
[exp]
32.46 0.5377
AT4G33950 ATOST1, P44, SR... SNF1-RELATED PROTEIN KINASE 2.... Potri.009G106900
[exp]
42.53 0.5531 OST1.1
AT3G02540 RAD23C, RAD23-3 RADIATION SENSITIVE23C, PUTATI... Potri.004G100700
[exp]
43.23 0.5606
AT3G60510 ATP-dependent caseinolytic (Cl... Potri.014G057400
[exp]
52.67 0.5425
AT5G10320 unknown protein Potri.005G073600
[exp]
55.27 0.5456

Potri.006G259600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.