Plant FIBer expression Database

Potri.006G259700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G32030 104 / 8e-27 unknown protein
AT1G15800 86 / 4e-20 unknown protein
AT1G80610 79 / 9e-18 unknown protein
AT5G25210 58 / 3e-10 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G053900
[exp]
90 / 3e-21 AT1G80610 88 / 5e-21 unknown protein
Potri.001G313900
[exp]
73 / 4e-15 AT1G80610 / unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001935
[exp]
121 / 1e-33 AT4G32030 80 / 5e-18 unknown protein
PFAM info
Representative CDS sequence
>Potri.006G259700.3 pacid=42769136 polypeptide=Potri.006G259700.3.p locus=Potri.006G259700 ID=Potri.006G259700.3.v4.1 annot-version=v4.1
ATGATGGAGGAGTGGGTGACAGCGGCGATGGCAGACGAGACAGTAGTAGCAAAACTACTACTGCGCCTCAAACAATCACAGGCGACGGCATCAGCTTCCG
CGGTGCCAGCGGTTATTCCCTTGCGATGGGGGATGCGGCTTCCGAGGTCAAGGCCGGGAACGATGACAGCAACGAATTCTTCTTCATTGAGATGCGATGT
CGTTTTGAAAAGTAAGGAAGGCGGCGGCGGCGATTCCTCTACTAGATGCAGTCCTACCACTCCTCTTTCATGGAGCGGTGGTGGTGATGGTGGTGCTTCT
CCGTCCGGTACTGGTGACGGTTTTGAAGAAACCAGCCGCCGCCACCTCAGCAGTTCTCCTCCGCCACCTGGCGTTAGATCCAAGGGTGCTGGTATTGGTG
AAACCACTAGCAATATAGTGAAGAGGTCAAGAAAAAAGAAGACTTTTTCTGAACTTAAAGAGGAGGAAACGCAGCTAGTGAAGGAAGGGGTTTATCTTAA
AAAGGAGATATCAACTGTACGTGCAACATTTAAGGAGGAGAGAGCTAGAAATGAGAATTTGAAGAGAATTAAGATTGATTTGAATTTGCATTATGGAGAT
GAACTAGAAGCCTCGACTAGTAACGGCATTCCATCAACATTGCCCACGCGTGCCAAAGGTGATTCCCATCTGCAATCAAGCTCTTCTGAAACAGATAAGG
CGATTTCAAATCATGATAGATCTTTCCTGCTACCTGATCTAAATATGATGCCATCTGACGAGGGAGACACTGGTACTGAAACTTTATAG
AA sequence
>Potri.006G259700.3 pacid=42769136 polypeptide=Potri.006G259700.3.p locus=Potri.006G259700 ID=Potri.006G259700.3.v4.1 annot-version=v4.1
MMEEWVTAAMADETVVAKLLLRLKQSQATASASAVPAVIPLRWGMRLPRSRPGTMTATNSSSLRCDVVLKSKEGGGGDSSTRCSPTTPLSWSGGGDGGAS
PSGTGDGFEETSRRHLSSSPPPPGVRSKGAGIGETTSNIVKRSRKKKTFSELKEEETQLVKEGVYLKKEISTVRATFKEERARNENLKRIKIDLNLHYGD
ELEASTSNGIPSTLPTRAKGDSHLQSSSSETDKAISNHDRSFLLPDLNMMPSDEGDTGTETL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G32030 unknown protein Potri.006G259700
[exp]
0 1
AT3G54440 glycoside hydrolase family 2 p... Potri.001G027400
[exp]
4.00 0.8189
AT2G35800 SAMTL S-adenosyl methionine transpor... Potri.008G043700
[exp]
8.71 0.7834
AT4G38470 STY46 serine/threonine/tyrosine kina... Potri.009G139400
[exp]
10.24 0.7930
AT5G59080 unknown protein Potri.009G038300
[exp]
16.73 0.7597
AT3G13340 Transducin/WD40 repeat-like su... Potri.014G147500
[exp]
18.97 0.7600
AT1G76880 Trihelix Duplicated homeodomain-like su... Potri.002G068600
[exp]
21.49 0.7556 GT2.3
AT2G14520 CBS domain-containing protein ... Potri.009G082300
[exp]
22.22 0.7541
AT2G38040 CAC3 acetyl Co-enzyme a carboxylase... Potri.014G081000
[exp]
25.45 0.7275
AT1G17665 unknown protein Potri.003G038600
[exp]
28.24 0.7441
AT4G14880 OLD3, CYTACS1, ... ONSET OF LEAF DEATH 3, O-acety... Potri.013G035200
[exp]
30.19 0.7731

Potri.006G259700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.