Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11020 433 / 8e-150 Protein kinase superfamily protein (.1) AT4G32000 430 / 5e-149 Protein kinase superfamily protein (.1.2) AT2G25220 420 / 5e-145 Protein kinase superfamily protein (.1.2) AT1G80640 342 / 3e-114 Protein kinase superfamily protein (.1.2) AT3G58690 246 / 2e-77 Protein kinase superfamily protein (.1) AT1G54820 242 / 6e-75 Protein kinase superfamily protein (.1) AT1G61860 231 / 2e-71 Protein kinase superfamily protein (.1) AT3G24790 227 / 2e-70 Protein kinase superfamily protein (.1) AT3G20530 224 / 8e-69 Protein kinase superfamily protein (.1) AT4G13190 221 / 7e-68 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G022300 [exp] 704 / 0 AT2G25220 402 / 1e-137 Protein kinase superfamily protein (.1.2) Potri.001G048500 [exp] 424 / 4e-146 AT2G25220 465 / 1e-162 Protein kinase superfamily protein (.1.2) Potri.003G179500 [exp] 399 / 6e-137 AT2G25220 424 / 2e-147 Protein kinase superfamily protein (.1.2) Potri.014G143100 [exp] 256 / 4e-81 AT3G58690 573 / 0.0 Protein kinase superfamily protein (.1) Potri.013G025700 [exp] 248 / 1e-77 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1) Potri.005G036600 [exp] 243 / 1e-75 AT1G54820 434 / 4e-150 Protein kinase superfamily protein (.1) Potri.001G421400 [exp] 234 / 9e-73 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1) Potri.011G137000 [exp] 228 / 1e-70 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Potri.018G068100 [exp] 237 / 1e-68 AT5G56890 801 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041026 [exp] 541 / 0 AT4G32000 480 / 4e-169 Protein kinase superfamily protein (.1.2) Lus10001937 [exp] 529 / 0 AT4G32000 468 / 6e-164 Protein kinase superfamily protein (.1.2) Lus10002328 [exp] 375 / 1e-127 AT4G32000 436 / 6e-152 Protein kinase superfamily protein (.1.2) Lus10026091 [exp] 375 / 7e-127 AT1G80640 435 / 5e-151 Protein kinase superfamily protein (.1.2) Lus10005345 [exp] 353 / 5e-118 AT2G25220 404 / 2e-138 Protein kinase superfamily protein (.1.2) Lus10029948 [exp] 244 / 2e-75 AT1G54820 469 / 1e-162 Protein kinase superfamily protein (.1) Lus10004461 [exp] 237 / 2e-72 AT1G54820 465 / 4e-161 Protein kinase superfamily protein (.1) Lus10043050 [exp] 231 / 2e-71 AT3G20530 561 / 0.0 Protein kinase superfamily protein (.1) Lus10033606 [exp] 231 / 3e-71 AT3G58690 606 / 0.0 Protein kinase superfamily protein (.1) Lus10019621 [exp] 229 / 1e-70 AT3G20530 536 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.006G260100.1 pacid=42768734 polypeptide=Potri.006G260100.1.p locus=Potri.006G260100 ID=Potri.006G260100.1.v4.1 annot-version=v4.1 ATGAAGCTTCTTCATCTTGTTCTTGCTCTTCAAACAGTTCCCATTTGGTTTTTTCACTTATGTCTAGTAGTAGTACATGCCATACAAGAAGACCCACTTG TTTCTTCACCACCCCCCTCTCCCATTTCTCCCATTTCCACTTCCATGGCTGCCTTCTCTCCAGGGGTTGAATTGGAAATGGGAATCAAAGACCAACAAAA GCACGAGGAGTTGCACAAGAAAATGATTCTGTTACTCATTGTTTGTTGTAGCATTCTTGTTGTTATCGTCTTTCTTTCTCTGTTTTCTTGTTTCATTTAC TACAGGAAGTCCTGTCAGAAGAAGAAAGCTTCTCAGTGTTCAGATGCGGAGAAAGGGCTTTCATTGTCACCATTTTTTGGCAAATTCAGTTCCTTGAGAA TGGTTAGTAACAAGGGATCTGTTTCATTAATCGATTATAAGATACTAGAGGAAGGAACAAACAATTTTGAAGATGATAAATTGTTGGGGAGGGGTGGATT TGGACTTGTATATAAGGCTGTATTGGAAGATGACTCAAGTATTGCAGTCAAGAAACTAGACTGTGCAACTGATGATGCACAGAGAGAATTTGAGAATGAG GTGGGTTTGTTAAGCAAATTTCAGCATCCAAATATAATTTCTATTGTGGGCTATAGTGTTCATGAGGAGATGGGGTTCATTATTTATGAGTTGATGTCCA ATGGGTCCCTTGAAGATCTATTGCATGGAACTTCTCGCGGATCTTCATTAAACTGGCATTTAAGGTTGAAAATTGCTCTTGATACAGCAAGAGGATTAGA ATATCTGCACGAGTTCTGCAAGCCAGCAGTGATCCATAGAGATCTGAAATCATCTAATATACTTTTGGATGCCAACTTCAATGCCAAGCTGTCAGATTTC GGTCTTGCTGTAGCTGATAGTTCTCATAACAAGAACAAGCTCAAGCTTTCAGGCACTGTGGGTTATGTAGCCCCTGAGTATCTGCTAGATGGTGAATTGA CAGATAAGAGTGATGTCTATGCTTTTGGAGTTGTGCTTCTGGAGCTTCTATTAGGAAGAAGGCCTGTAGAAAAACTGGCACCAGCTCATTGCCAATCTAT AGTAACATGGGCCATGCCTCAGCTTACTAACAGAGCTGTCCTTCCAACCATTGTGGATCCTGTGATCAGAGATTCAGTAGACGAGAAGTACTTGTTCCAG GTTGCTGCAGTGGCTGTATTGTGTATTCAACCAGAGCCGAGTTACCGCCCCCTCATAACAGATGTTGTGCACTCTCTTGTCCCACTGGTTCCTCTTGAGC TTGGAGGGACGCTAAGAGTTGCACAACCTACAACTCCTAGAGGTCATCGACAAGGCTAA
AA sequence Show only first row Show all	>Potri.006G260100.1 pacid=42768734 polypeptide=Potri.006G260100.1.p locus=Potri.006G260100 ID=Potri.006G260100.1.v4.1 annot-version=v4.1 MKLLHLVLALQTVPIWFFHLCLVVVHAIQEDPLVSSPPPSPISPISTSMAAFSPGVELEMGIKDQQKHEELHKKMILLLIVCCSILVVIVFLSLFSCFIY YRKSCQKKKASQCSDAEKGLSLSPFFGKFSSLRMVSNKGSVSLIDYKILEEGTNNFEDDKLLGRGGFGLVYKAVLEDDSSIAVKKLDCATDDAQREFENE VGLLSKFQHPNIISIVGYSVHEEMGFIIYELMSNGSLEDLLHGTSRGSSLNWHLRLKIALDTARGLEYLHEFCKPAVIHRDLKSSNILLDANFNAKLSDF GLAVADSSHNKNKLKLSGTVGYVAPEYLLDGELTDKSDVYAFGVVLLELLLGRRPVEKLAPAHCQSIVTWAMPQLTNRAVLPTIVDPVIRDSVDEKYLFQ VAAVAVLCIQPEPSYRPLITDVVHSLVPLVPLELGGTLRVAQPTTPRGHRQG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11020			Protein kinase superfamily pro...		Potri.006G260100 [exp]	0	1
AT5G13140			Pollen Ole e 1 allergen and ex...		Potri.003G167100 [exp]	2.00	0.7742
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Potri.001G386900 [exp]	4.47	0.7357
AT2G35800		SAMTL	S-adenosyl methionine transpor...		Potri.010G217900 [exp]	5.29	0.7540
AT1G25510			Eukaryotic aspartyl protease f...		Potri.010G128200 [exp]	5.47	0.7679
AT4G20940			Leucine-rich receptor-like pro...		Potri.011G163700 [exp]	7.61	0.7736
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Potri.004G179742 [exp]	14.07	0.7320
AT5G52860		ABCG8	ATP-binding cassette G8, ABC-2...		Potri.015G027600 [exp]	14.49	0.7440
AT2G38430			unknown protein		Potri.019G029900 [exp]	21.09	0.7507
AT5G13140			Pollen Ole e 1 allergen and ex...		Potri.001G060500 [exp]	24.53	0.6940
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Potri.019G103900 [exp]	32.03	0.7492

Compare expression of checked genes

Potri.006G260100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.