Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-AAT2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31990 802 / 0 AAT3, ATAAT1, ASP5 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) AT5G19550 474 / 3e-166 AAT2, ASP2 aspartate aminotransferase 2 (.1) AT5G11520 467 / 8e-163 YLS4, ASP3 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) AT1G62800 426 / 3e-147 ASP4 aspartate aminotransferase 4 (.1.2) AT2G30970 406 / 6e-139 ASP1 aspartate aminotransferase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G022200 [exp] 896 / 0 AT4G31990 799 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) Potri.018G082500 [exp] 488 / 9e-172 AT5G19550 736 / 0.0 aspartate aminotransferase 2 (.1) Potri.006G241600 [exp] 481 / 2e-168 AT5G11520 769 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Potri.006G241500 [exp] 439 / 5e-152 AT5G11520 652 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Potri.014G143300 [exp] 395 / 6e-135 AT2G30970 725 / 0.0 aspartate aminotransferase 1 (.1.2) Potri.006G107100 [exp] 384 / 2e-130 AT2G30970 632 / 0.0 aspartate aminotransferase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001938 [exp] 835 / 0 AT4G31990 790 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) Lus10001753 [exp] 583 / 0 AT4G31990 540 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) Lus10043222 [exp] 484 / 6e-170 AT5G11520 724 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Lus10011101 [exp] 480 / 2e-168 AT5G11520 719 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Lus10022137 [exp] 480 / 1e-167 AT5G11520 763 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Lus10029796 [exp] 406 / 7e-139 AT2G30970 749 / 0.0 aspartate aminotransferase 1 (.1.2) Lus10020720 [exp] 404 / 4e-138 AT2G30970 753 / 0.0 aspartate aminotransferase 1 (.1.2) Lus10025252 [exp] 335 / 3e-111 AT2G30970 557 / 0.0 aspartate aminotransferase 1 (.1.2) Lus10000181 [exp] 190 / 9e-56 AT2G30970 347 / 2e-117 aspartate aminotransferase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00155 [poplar] [flax] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Potri.006G260200.4 pacid=42768491 polypeptide=Potri.006G260200.4.p locus=Potri.006G260200 ID=Potri.006G260200.4.v4.1 annot-version=v4.1 ATGGCTTCAACAATGCTTTCTTTAGCTTCTACCACTCCTTCTGCTTCACTTTCTATGCAAGAAATTCTCAAGGGAAAGGCGAGGCTTGGAAGTGGTAGTG TGAGTACATTGTTTAACAAGGAGAAAGGCAATCCCTTTATCAAGGCAAAGTCATTTGGCCGGATATCTATGACTGTCGCAGTTAATGTATCTCGTTTTGA GGGTATAGCTATGGCTCCTCCTGATCCTATCCTTGGTGTTTCTGAAGCTTTTAGAGCAGACACGGATGTAAAGAAGCTCAACCTTGGAGTTGGGGCCTAC CGAACTGAAGAGTTACAGCCTTATGTGCTTGATGTCGTTAAGAAGGCTGAGAATCTTATGCTGGAGAGGGGTGAAAACAAGGAGTATCTCCCAATTGAAG GTTTGGCTGCATTCAATAAGGTGACTGCAGAGTTATTATTCGGAGCTGACAACCCAGTGATAAAACAACAAAGAGTTGCAACTGTTCAAGGTCTTTCAGG CACTGGTTCGCTTCGATTAGCTGCAGCGCTCATTGAGAGATATTTTCCTGGAGCGCAAGTTCTGATATCATCTCCAACTTGGGGTAATCACAAGAATATT TTCAATGATGCAAGAGTTCCATGGTCCGAGTACCGATACTATGATCCCAAAACAGTTGGCTTGGATTTTGAGGGGATGATATCAGACATAAAGGCAGCCC CTGAGGGATCATTTGTATTGCTTCATGGCTGTGCACACAACCCGACTGGTATTGATCCAACCCCTGAACAATGGGAGAAAATTGCTGATGTCATTCAAGA AAAGAACCACGTTCCATTTTTTGATGTGGCCTACCAGGGATTCGCTAGTGGAAGCCTCGATGCAGATGCATCATCAGTGAGGTTGTTTGCTGCACGTGGT ATGGAGCTTTTGATTGCTCAGTCGTACAGCAAAAACTTGGGCTTGTATGCTGAAAGAATTGGGGCAATTAATGTTGTCTGCTCATCGGCAGATGCAGCAG CAAGGGTTAAGAGCCAGCTGAAAAGGATTGCCCGACCAATGTACTCAAATCCTCCTGTTCACGGTGCTAGGATTGTTGCTAACGTTGTTGGGGATCCAAT TCTCTTTAATGAATGGAAAGAAGAGATGGAGATGCTGGCTGGAAGGATAAAAAATGTGAGGCAGAAACTATTTGACAGTCTCTCCGCAAAAGATAAGAGT GGGAAAGATTGGTCTTTTATACTGAAGCAGATTGGCATGTTCTCCTTCACAGGCTTGAACAAAACTCAGAGCGAAAATATGACCAACAAGTGGCATGTCT ATATGACAAGGGATGGAAGAATATCCTTGGCAGGACTGTCTTTGGCCAAATGTGAATACCTTGCTGATGCCATTATTGACTCTTACCATAATGTCAGTTG A
AA sequence Show only first row Show all	>Potri.006G260200.4 pacid=42768491 polypeptide=Potri.006G260200.4.p locus=Potri.006G260200 ID=Potri.006G260200.4.v4.1 annot-version=v4.1 MASTMLSLASTTPSASLSMQEILKGKARLGSGSVSTLFNKEKGNPFIKAKSFGRISMTVAVNVSRFEGIAMAPPDPILGVSEAFRADTDVKKLNLGVGAY RTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNPVIKQQRVATVQGLSGTGSLRLAAALIERYFPGAQVLISSPTWGNHKNI FNDARVPWSEYRYYDPKTVGLDFEGMISDIKAAPEGSFVLLHGCAHNPTGIDPTPEQWEKIADVIQEKNHVPFFDVAYQGFASGSLDADASSVRLFAARG MELLIAQSYSKNLGLYAERIGAINVVCSSADAAARVKSQLKRIARPMYSNPPVHGARIVANVVGDPILFNEWKEEMEMLAGRIKNVRQKLFDSLSAKDKS GKDWSFILKQIGMFSFTGLNKTQSENMTNKWHVYMTRDGRISLAGLSLAKCEYLADAIIDSYHNVS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31990		AAT3, ATAAT1, A...	ASPARTATE AMINOTRANSFERASE DEF...		Potri.006G260200 [exp]	0	1	Pt-AAT2.1
AT5G17660			tRNA (guanine-N-7) methyltrans...		Potri.013G070800 [exp]	5.56	0.9360
AT5G08540			unknown protein		Potri.010G254800 [exp]	9.16	0.9344
AT1G10522			unknown protein		Potri.010G094900 [exp]	13.41	0.9293
AT5G20720		CHCPN10, ATCPN2...	CHLOROPLAST CHAPERONIN 10, cha...		Potri.018G063200 [exp]	18.49	0.9169	Pt-CPN21.2
AT2G44920			Tetratricopeptide repeat (TPR)...		Potri.008G058800 [exp]	21.49	0.9163
AT1G32580			plastid developmental protein ...		Potri.010G068300 [exp]	24.00	0.9266
AT2G32650			RmlC-like cupins superfamily p...		Potri.014G156900 [exp]	24.97	0.9149
AT4G01650			Polyketide cyclase / dehydrase...		Potri.014G110600 [exp]	26.07	0.9164
AT2G30695			unknown protein		Potri.013G125500 [exp]	28.24	0.9195
AT3G54090		FLN1	fructokinase-like 1 (.1)		Potri.016G109600 [exp]	29.06	0.9203

Compare expression of checked genes

Potri.006G260200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.