Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08850 694 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G35710 647 / 0 Protein kinase family protein with leucine-rich repeat domain (.1) AT5G63930 476 / 3e-151 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 466 / 2e-147 Leucine-rich receptor-like protein kinase family protein (.1) AT4G20140 463 / 4e-145 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G48940 436 / 8e-136 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G49670 431 / 2e-135 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G28650 426 / 2e-133 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G44700 430 / 1e-132 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT5G65700 424 / 1e-132 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G123700 [exp] 1491 / 0 AT4G08850 688 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G124400 [exp] 1489 / 0 AT4G08850 644 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123800 [exp] 1424 / 0 AT4G08850 751 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G122900 [exp] 1412 / 0 AT4G08850 667 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123400 [exp] 1405 / 0 AT4G08850 708 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123100 [exp] 1399 / 0 AT4G08850 664 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124300 [exp] 1179 / 0 AT4G08850 727 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124100 [exp] 1034 / 0 AT4G08850 711 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124200 [exp] 1023 / 0 AT4G08850 743 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002293 [exp] 712 / 0 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10004046 [exp] 690 / 0 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020935 [exp] 680 / 0 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020936 [exp] 668 / 0 AT4G08850 793 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10008712 [exp] 665 / 0 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10031161 [exp] 665 / 0 AT4G08850 710 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10003612 [exp] 631 / 0 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10019036 [exp] 619 / 0 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019035 [exp] 594 / 0 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10011761 [exp] 476 / 1e-152 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.006G261900.1 pacid=42768946 polypeptide=Potri.006G261900.1.p locus=Potri.006G261900 ID=Potri.006G261900.1.v4.1 annot-version=v4.1 ATGGCTTCCCAAATCTTGCTTTTATCCATACCTTTGTTGTTTATTTCCTTACTTGCTTATGCTTCCTTCTTTACTTCTTTTGCTTACTCAGGTACTGGAG CTGAAGTAGCAAATGGAAGGAAACAAGCAGAAGCTCTTCTAAAATGGAAAGCCAGTCTTTACAACCAAAGCCAGTCTCTCCTGTCTTCATGGGACGGAGA CAGGCCTTGCAACTGGGTAGGAATCCGTTGCGACACGTCTGGTATTGTCACCAACATAAGTCTGTCTCATTATAGGTTGAGAGGTACGCTTAATAGTCTC AGATTCTCTTCCTTTCCTAACTTGATTAAGCTTATCCTTCGCAACAACTCGCTCTACGGGTCAGTTCCTTCCCATATAGGTAACCTTTCCAACCTCATCA TCCTTGATTTGTCTTTAAATAGCATTTCTGGCAACATACCACCAGAAGTTGGAAAATTGGTATCTCTTTATTTGCTTGATTTTTCAAAAAACAACCTTAG TGGTGTTCTTCCTACGTCCATAGGAAACTTAAGCAACTTGTCTTTTCTTTACCTTTACGAAAACAAACTCTCTGGTTTCATACCTAGGGAAGTAGGAATG CTTGAACATCTATCTACCCTTCATTTGGCCGATAATAATTTTGAAGGTCCAATCCCTGCTTCCATAGGAAATATGAAATCTCTCACTAGTTTAGATTTGG CATCTAATTATCTAACTGGGGCAATACCAGCATCTCTAGGCAATTTAAGAAACTTATCTGCACTTTCCCTTGGGAAGAACAATCTTTCTGGTCCCGTTCC TCCAGAAATGAACAATCTTACACATTTGTCTTTTCTACAAATAGGTTCTAATAGATTGTCTGGAAATCTACCACAAGATGTGTGCCTTGGTGGATTGCTT TCATATTTTGGTGCGATGGACAATTATTTCACGGGACCTATCCCGAAAAGCTTGAAAAATTGCAGCCGTTTGGTGAGACTCAGACTTGAGAGAAACCAAC TTAATGGAAACATATCTGAAGCTTTTGGCACACATCCCCATTTGTACTACATGGATTTGAGTGATAATGAATTGCATGGTGAACTTTCATGGAAATGGGA GCAGTTTAACAATCTGACAACTTTCAGAATTTCTGGAAACAAAATATCTGGAGAAATACCAGCTGCTCTTGGAAAGGCAACTCGTCTACAAGCTCTTGAC CTTTCATCAAATCAACTAGTTGGGAGAATTCCAAAAGAATTGGGAAATTTAAAGTTGATTAAACTAGAACTCAACGATAACAAACTTTCAGGTGATATTC CATTCGATGTCGCATCGCTATCTGATCTCGAAAGGCTTGGCCTGGCCGCGAACAATTTTAGTGCAACGATTCTTAAACAGCTTAGCAAGTGCTCAAAACT GATATTCTTGAATATGAGCAAGAATAGATTCACAGGGATTATTCCTGCTGAGACGGGGTCTTTACAATACTCTCTTCAAAGTCTTGATCTCAGTTGGAAT TCCCTGATGGGAGATATAGCGCCAGAGCTTGGACAGCTGCAGCGGCTAGAGGTTTTAAACCTCTCCCATAATATGCTGTCTGGTCTCATTCCAACCAGTT TTAGTAAACTGCAAAGCCTCACTAAAGTGGATGTATCCTATAACAAGTTAGAGGGTCCCATTCCTGACACCAAAGCCTTTCGTGAGGCACCATTTGAAGC AATTCGTAACAACACCAACCTGTGTGGCAATGCTACTGGTTTGGAGGCTTGTGCAGCTCTCAAGAAAAACAAAACTGTGCACAAGAAGGGCCCCAAAGTT GTCTTTTTTACTGTATTTTCTCTGCTGGGTGGTTTGTTGGGCCTGATGGTAGGTTTTCTTATCTTTTTCCAAAGAAGAAGAAAGAAAAGGTTAATGGAAA CACCACAAAGAGATGTTCCCGCGAGATGGTGCCTTGGTGGGGAACTGCGCTACGAGGACATCATTGAGGCTACTGAGGAATTCAACTCCAAATATTGCAT TGGTACAGGAGGGTATGGGGTAGTTTACAAAGCTGTACTTCCATCAGAACAAGTCCTTGCCGTGAAGAAGTTTCACCAAACAGCAGAAGTTGAGATGACC ACCTTGAAAGCTTTTAGAAGCGAGATTGATGTCTTAATGTGTATACGGCATCGAAATATTGTGAAGCTGTATGGTTTCTGCTCGCATGCCAAACACTCAT TTTTGGTATATGAATTTGTGGAAAGGGGAAGTTTAAGAAAGGTATTGAACGACGAGGACCAAGCAGCAAACATGGATTGGGATAAAAGGATAAACCTTAT CAAAGGCGTTGCCAATGCTTTATCCTACATGCACCATGACTGCTCTCCTCCGATTATTCATAGAGACATTTCCAGCAACAATGTTCTTTTGGATTCAGAA TATGAGGCTCATGTCTCTGACTTCGGCACCGCTAGGCTCTTAATGCCTGACTCATCCAATTGGACATCATTTGCTGGCACCTTTGGGTACACAGCTCCAG AGCTGGCATACACAATGAAAGTGGATGAAAAATGTGATGTGTATAGCTTTGGAGTTGTAACATTGGAAGTAATGATGGGAAAGCATCCTGGCGATTTCAT CTCATCTCTGATGTTATCTGCTTCCACCTCCTCATCATCATCACCATTCGGTCACAACACACTCTTGAAGGATGTCTTAGACCAGCGCCTCCCGCCTCCT GAAATCAAACCTGGGAAAGGTGTGGCACATGTTGCAAAACTAGCATTTGCTTGCTTGCAGACCGATCCCCATCATCGGCCAACAATGCGACAAGTTTCTA CAGAGCTTACAACTCGTTGGCCTCCATTGCCAAAGCTATTCAGCACGATGGAATTGGAAGATATACTGGTTCACAGAAATGATATTGGCTGA
AA sequence Show only first row Show all	>Potri.006G261900.1 pacid=42768946 polypeptide=Potri.006G261900.1.p locus=Potri.006G261900 ID=Potri.006G261900.1.v4.1 annot-version=v4.1 MASQILLLSIPLLFISLLAYASFFTSFAYSGTGAEVANGRKQAEALLKWKASLYNQSQSLLSSWDGDRPCNWVGIRCDTSGIVTNISLSHYRLRGTLNSL RFSSFPNLIKLILRNNSLYGSVPSHIGNLSNLIILDLSLNSISGNIPPEVGKLVSLYLLDFSKNNLSGVLPTSIGNLSNLSFLYLYENKLSGFIPREVGM LEHLSTLHLADNNFEGPIPASIGNMKSLTSLDLASNYLTGAIPASLGNLRNLSALSLGKNNLSGPVPPEMNNLTHLSFLQIGSNRLSGNLPQDVCLGGLL SYFGAMDNYFTGPIPKSLKNCSRLVRLRLERNQLNGNISEAFGTHPHLYYMDLSDNELHGELSWKWEQFNNLTTFRISGNKISGEIPAALGKATRLQALD LSSNQLVGRIPKELGNLKLIKLELNDNKLSGDIPFDVASLSDLERLGLAANNFSATILKQLSKCSKLIFLNMSKNRFTGIIPAETGSLQYSLQSLDLSWN SLMGDIAPELGQLQRLEVLNLSHNMLSGLIPTSFSKLQSLTKVDVSYNKLEGPIPDTKAFREAPFEAIRNNTNLCGNATGLEACAALKKNKTVHKKGPKV VFFTVFSLLGGLLGLMVGFLIFFQRRRKKRLMETPQRDVPARWCLGGELRYEDIIEATEEFNSKYCIGTGGYGVVYKAVLPSEQVLAVKKFHQTAEVEMT TLKAFRSEIDVLMCIRHRNIVKLYGFCSHAKHSFLVYEFVERGSLRKVLNDEDQAANMDWDKRINLIKGVANALSYMHHDCSPPIIHRDISSNNVLLDSE YEAHVSDFGTARLLMPDSSNWTSFAGTFGYTAPELAYTMKVDEKCDVYSFGVVTLEVMMGKHPGDFISSLMLSASTSSSSSPFGHNTLLKDVLDQRLPPP EIKPGKGVAHVAKLAFACLQTDPHHRPTMRQVSTELTTRWPPLPKLFSTMELEDILVHRNDIG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08850			Leucine-rich repeat receptor-l...		Potri.006G261900 [exp]	0	1
AT4G08850			Leucine-rich repeat receptor-l...		Potri.015G123700 [exp]	1.73	0.9747
					Potri.014G115800 [exp]	5.91	0.9250
AT4G27290			S-locus lectin protein kinase ...		Potri.001G411000 [exp]	6.92	0.9084
AT4G08850			Leucine-rich repeat receptor-l...		Potri.015G124400 [exp]	7.07	0.8735
					Potri.002G190900 [exp]	8.77	0.9199
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G019400 [exp]	9.48	0.9375
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Potri.009G082900 [exp]	10.39	0.8951	PR1.1
AT5G10770			Eukaryotic aspartyl protease f...		Potri.018G014600 [exp]	11.22	0.9037
AT4G08850			Leucine-rich repeat receptor-l...		Potri.015G123800 [exp]	12.32	0.8451
AT1G06330			Heavy metal transport/detoxifi...		Potri.004G056800 [exp]	12.80	0.8804

Compare expression of checked genes

Potri.006G261900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.