Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PKL.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25170 1824 / 0 CKH2, SSL2, GYM, CHD3, PKL, CHR6 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) AT4G31900 1191 / 0 PKR2 PICKLE RELATED 2, chromatin remodeling factor, putative (.1.2) AT2G13370 573 / 1e-176 CHR5 chromatin remodeling 5 (.1) AT5G44800 558 / 3e-168 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1) AT3G06400 416 / 1e-124 CHR11 chromatin-remodeling protein 11 (.1.2.3) AT5G18620 413 / 1e-123 CHR17 chromatin remodeling factor17 (.1.2) AT3G06010 378 / 5e-111 ATCHR12 Homeotic gene regulator (.1) AT5G19310 374 / 8e-110 Homeotic gene regulator (.1) AT5G66750 341 / 1e-100 CHR01, CHA1, SOM1, CHR1, SOM4, DDM1, ATDDM1 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) AT2G44980 340 / 2e-99 ASG3 ALTERED SEED GERMINATION 3, SNF2 domain-containing protein / helicase domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G021100 [exp] 2550 / 0 AT2G25170 1818 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Potri.003G110100 [exp] 583 / 1e-176 AT5G44800 1988 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.001G123400 [exp] 580 / 9e-176 AT5G44800 1996 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.001G253400 [exp] 564 / 4e-173 AT2G13370 2206 / 0.0 chromatin remodeling 5 (.1) Potri.009G047800 [exp] 558 / 4e-171 AT2G13370 2129 / 0.0 chromatin remodeling 5 (.1) Potri.010G021400 [exp] 418 / 2e-125 AT3G06400 1748 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.008G205600 [exp] 412 / 2e-123 AT3G06400 1724 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.007G026700 [exp] 374 / 2e-112 AT5G66750 993 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.019G129900 [exp] 369 / 4e-111 AT5G66750 1047 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005339 [exp] 1966 / 0 AT2G25170 1787 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10041019 [exp] 1957 / 0 AT2G25170 1776 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10038363 [exp] 567 / 4e-171 AT5G44800 1916 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Lus10022423 [exp] 555 / 6e-170 AT2G13370 2250 / 0.0 chromatin remodeling 5 (.1) Lus10036223 [exp] 552 / 2e-167 AT5G44800 1780 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Lus10009711 [exp] 545 / 2e-167 AT2G13370 2115 / 0.0 chromatin remodeling 5 (.1) Lus10033967 [exp] 412 / 3e-119 AT5G18620 1650 / 0.0 chromatin remodeling factor17 (.1.2) Lus10010522 [exp] 377 / 8e-111 AT3G06010 1358 / 0.0 Homeotic gene regulator (.1) Lus10041735 [exp] 367 / 1e-109 AT5G66750 1069 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10034064 [exp] 374 / 2e-109 AT3G06010 1422 / 0.0 Homeotic gene regulator (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0049 [poplar] [flax] Tudor PF00385 [poplar] [flax] Chromo Chromo (CHRromatin Organisation MOdifier) domain CL0390 [poplar] [flax] zf-FYVE-PHD PF00628 [poplar] [flax] PHD PHD-finger CL0023 [poplar] [flax] P-loop_NTPase PF04851 [poplar] [flax] ResIII Type III restriction enzyme, res subunit CL0023 [poplar] [flax] PF06461 [poplar] [flax] DUF1086 Domain of Unknown Function (DUF1086) CL0023 [poplar] [flax] PF06465 [poplar] [flax] DUF1087 Domain of Unknown Function (DUF1087)
Representative CDS sequence Show only first row Show all	>Potri.006G262200.4 pacid=42767159 polypeptide=Potri.006G262200.4.p locus=Potri.006G262200 ID=Potri.006G262200.4.v4.1 annot-version=v4.1 ATGAGTAGCTTAGTGGAGAGGCTACGTGTTAGATCAGAAAGGAGGCCAGTTTATAACTTGGATGAATCAGACGATGATGATTATGTTTCCGGGAAAGCTA AAAATCCCCAGGAGAAAATTGAAAGATTTGTCAGGGATGACGCGAAGGAGGATTCCTGTCAAGCTTGTGGAGAAAGTGAGAATCTTCTGAATTGTGAAAC CTGCACATATGCTTACCATTCCAAGTGCCTGCTTCCACCACTAAAAGCTCCTTTTCCTAGCAATTGGAGGTGCCCTGAATGTGTTAGCCCTCTGAATGAT ATCGATAAGTTATTGGACTGTGAAATGCGCCCTACTGTTGCTGATGATAGCGATGCCTCTAAACTGGGCTCAAAGCAAATTTTTGTAAAACAGTATCTTG TGAAATGGAAAGGCTTATCTTATCTACATTGCACTTGGGTACCTGAGAAAGAGTTTTTAAAAGCTTTCAAGTCAAATCCCCGTCTGAAGACTAAAGTAAA CAACTTCAATCGTCAGATGGCATCAAACAACAACTCCGAGGATGAATTTGTTGCTATCCGACCTGAATGGACAACTGTTGATCGGATTCTTGCTTGCAGG GGAGATGAGGATGAGAAGGAATATCTTGTGAAGTACAAGGAACTCCCTTACGATGAATGTTATTGGGAATTTGAATCAGATGTATCTGCATTTCAGCCTG AAATAGAAAAATTTAATAAAATTCAATCTAGGTCTCACAAACCGAGCAAGCAAAAGAGCAGCCTTCAAGATGCTACTGATTCAAAGAAGAAATCAAAAGA ATTTCAACAGTGTGATCACAGTCCTGAATTTCTTTCTGGAGGCTCATTGCATCCTTATCAGTTAGAAGGGCTGAACTTCTTACGTTTTTCTTGGTCCAAA CAAACACATGTAATACTTGCTGATGAGATGGGCCTTGGGAAAACTATACAGAGTATTGCATTTTTAGCATCTCTTCGCGAAGAGGGCATCTCTCCGTATC TGGTAGTAGCTCCACTTTCAACATTGCGAAACTGGGAACGTGAATTTGCAACATGGGCACCTCAAATGAATGTTGTTATGTATGTTGGCTCCGCACAAGC TCGTGCTGTCATAAGGGAATATGAGTTTTACTATCCCAAAAATCACAAGAAGATCAAGAAAAAGAAATCTGGTCAAGTTGTTACTGAAAGCAAGCAAGAT AGAATAAAATTTGATGTGCTTCTAACGTCTTATGAGATGATTAACTTGGACTCAACATCGCTGAAACCAATAAAGTGGGAATGCATGATTGTTGATGAAG GTCATCGTCTAAAAAACAAGGACTCTAAATTGTTTCTCTCGCTGAAGCAGTACTGTAGTAACCATCGTGTGCTTTTGACTGGAACCCCTCTTCAGAACAA TCTGGATGAACTTTTCATGCTCATGCATTTCCTTGATGCTGGGAAGTTTGCAAGTTTAGAGGAATTCCAAGAGGAGTTTAAGGATATAAATCAAGAGGAG CAGATTTTGAGACTTCATAAAATGTTGGCTCCCCATCTCCTCAGAAGGGTGAAAAAGGATGTCATGAAAGAGCTACCTCCTAAGAAGGAACTCATTCTAC GTATTGAACTAAGTAGCAAGCAGAAAGAATATTACAAGGCCATTCTGACTCGCAACTATCAAATACTAACTCGACGTGGTGGTGCACAGATTTCTCTTAT CAATGTGGTTATGGAATTGCGCAAACTCTGTTGTCATCCTTATATGTTAGAAGGAGTGGAGCCGGATATTGAAGATACCAATGAATCTTTCAGGCAGCTC CTTGAAACTTCTGGGAAATTGCAACTGTTGGACAAACTGATGGTGAGACTTAAAGAACAAGGGCATAGAGTTCTCATTTACTCACAATTTCAGCACATGC TGGACTTGCTAGAAGATTACTGCACTCATAAGAAATGGATGTATGAACGGATAGATGGAAAGGTTGGTGGAGCTGAGAGACAAGTGCGCATAGATCGATT TAATGCCAAAAATTCTTCAAGATTTTGCTTTCTTCTCTCAACTAGAGCCGGAGGACTGGGAATAAACCTTGCAACTGCTGATACTGTTATTATATATGAT AGTGATTGGAATCCCCATGCTGATCTTCAAGCAATGGCTAGAGCACATCGACTTGGGCAAACCAACAAGGTATTGATTTATAGGCTCATAACCCGAGGAA CTATTGAGGAACGGATGATGCAACTGACTAAGAAGAAAATGGTTTTAGAGCACCTTGTTGTTGGGAGGCTGAAGGCACAGAATATTAATCAGGAAGAGTT AGATGACATCATAAGATATGGTTCAAAGGAGCTTTTTGCTGATGAGAATGATGAAGCAGGGAAATCACGTCAAATTCATTATGATGATGCTGCTATTGAT CGATTACTTGACCGTGAACAAGTTGGAGATGAAGAAACATCATTGGATGATGAAGAGGAAGATGGATTTTTGAAGGCGTTTAAGGTTGCAAATTTTGAGT ATATTGACGAAGCAGAGGCTGCCGCAGAGGAGGAAGCTCAAAAGGCAGCCATGGAAACGAGATCCACCATAAACAATTCTGAAAGAACTGAAAAAACAAA CTTTTGGGAAGAGTTGCTAAAAGATAGTTATGAAGTACACAAAGTTGAGGAGTTTAATGCCTTGGGCAAAGGAAAGAGAAGCCGTAAGCAGATGGTGTCT GTTGAAGATGATGACCTTGCTGGTCTAGAAGATGTAAGCTCTGATGGCGAGGATGACAATTATGAAGCTGAGTTGACTGATGGTGAAACAACATCATCAG GAGTAGTTCAGACAGTAAGAAGGCCTTATAAGAAGAAAGCTCGAGTGGATAATACAGAACCAATTCCTCTGATGGAAGGTGAAGGAAGATCATTCAGAGT ATTGGGTTTTAAACAAAATCAGAGGGCTGCCTTTGTACAAATCTTGATGAGGTTTGGGGTTGGGGACTATGACTGGAAGGAGTTTGCCTCTCGATTGAAA CAGAAGACATATGAAGAAGTAGAAAATTATGGGAGATTATTCTTGACTCACATAGCGGAAGATCTAACTGACTCACCAAATTTTTCAGACGGTGTTCCTA AAGAGGGTCTTAGAATACAAGACGTACTTGTTAGGATTGCTGTCCTGCTTTTGATAAGGGATAAGGCGAGGTTTGCATCAGAGAACCCAGGTAGCGCCCT TTTCACAGATGACATTATACTGCGCTACCCAGGCCTGAAGAGTGGAAAATTTTGGAAACAAGAGCACGATTCATTGTTACTTCATGCAGTATTGAAGCAT GGGTATGGAAGATGGCAAGCTATTGTTGATGACAAGGACTTGAAGGTTCAAGAGATAATCTGTAAAGAGTTGAATCTTCCTTGTATAAGACTACCTGTCC TTGGGCAAGGAGTTGCTCAAGCACAAAATGGTTCTACTTCTAACATTGCTAATGCAGAAGCTCCTAGCACCCAGGCACAGGCAAATGTTGCTGGAAATGA TGTAGCAGCTGATGTTGCTCAGGGGACAATTGATGCTGCAAACCCAGCACTGTCATATCGAGATTCATCTATATTATTTCATTTTAGAGATATGCAGAGA CGACAGGTAGAGTTCATTAAGAAAAGAGTGCTGCTTTTAGAGAGAGGACTCAATGCGGAGTACCAGAAAATTTACTTTGGTGGTGATATAAAACCAAATG AGATTACAAGTGAAGAGGCTGATGGTGAAACAAAGGCTGCTGACAGCTCAAGTTTAGGCTCCATAGAGATCAATGCTCAAATGATTGACCAGTTGCCTCA GATGGAACCAATTGGATCAGAAGAAATTTCAGCAGCTGCTTGTGATGACAATCCTGATAGATTGGCATTGGCTGAGCATTATAACAAGATGTGCACGGTG TTGGAGCAAAATGTTCATGAAACAATTCAGATATCCTTAACCAACCACCCTGCAAGTCTCAAGTTGAGACAGGGCCTTCAGCCATTAGAGATGATTTTTG AACAGATGAATCAAATTCTCTCTCCTTTACAACAAAAATCTACTTCGGAACAAGGTACTCTGGGACCGAACAAACATGTGCAAGCTGAATCACAGAGCAA TCAGGCTAAACTTCATTCACCATCTGACCAACAGAAGGAGAATAACGACAATGCTGCTGCTGTGGAAGATGTTGAAATGAAAGAGGCAACGACAGAGCCA AAATTGGAAGAAACCATTGCATCTTCGGATGAAGAAGCTCCACATTCTGCAGACCCAGTTACGCCTCCAAAAGAACCTATGTGTTCACCAGGGACATCTG AAAAGGATGTGCAAATGGTCGATACAAGTAATGGTACTGACACCAACACTGATGCTGTATCAAATGAAAATGAAACCACAGAGAAATCAAATTCGGGGGT GATCGTTTTAGATTGA
AA sequence Show only first row Show all	>Potri.006G262200.4 pacid=42767159 polypeptide=Potri.006G262200.4.p locus=Potri.006G262200 ID=Potri.006G262200.4.v4.1 annot-version=v4.1 MSSLVERLRVRSERRPVYNLDESDDDDYVSGKAKNPQEKIERFVRDDAKEDSCQACGESENLLNCETCTYAYHSKCLLPPLKAPFPSNWRCPECVSPLND IDKLLDCEMRPTVADDSDASKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLKTKVNNFNRQMASNNNSEDEFVAIRPEWTTVDRILACR GDEDEKEYLVKYKELPYDECYWEFESDVSAFQPEIEKFNKIQSRSHKPSKQKSSLQDATDSKKKSKEFQQCDHSPEFLSGGSLHPYQLEGLNFLRFSWSK QTHVILADEMGLGKTIQSIAFLASLREEGISPYLVVAPLSTLRNWEREFATWAPQMNVVMYVGSAQARAVIREYEFYYPKNHKKIKKKKSGQVVTESKQD RIKFDVLLTSYEMINLDSTSLKPIKWECMIVDEGHRLKNKDSKLFLSLKQYCSNHRVLLTGTPLQNNLDELFMLMHFLDAGKFASLEEFQEEFKDINQEE QILRLHKMLAPHLLRRVKKDVMKELPPKKELILRIELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFRQL LETSGKLQLLDKLMVRLKEQGHRVLIYSQFQHMLDLLEDYCTHKKWMYERIDGKVGGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYD SDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMQLTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDDAAID RLLDREQVGDEETSLDDEEEDGFLKAFKVANFEYIDEAEAAAEEEAQKAAMETRSTINNSERTEKTNFWEELLKDSYEVHKVEEFNALGKGKRSRKQMVS VEDDDLAGLEDVSSDGEDDNYEAELTDGETTSSGVVQTVRRPYKKKARVDNTEPIPLMEGEGRSFRVLGFKQNQRAAFVQILMRFGVGDYDWKEFASRLK QKTYEEVENYGRLFLTHIAEDLTDSPNFSDGVPKEGLRIQDVLVRIAVLLLIRDKARFASENPGSALFTDDIILRYPGLKSGKFWKQEHDSLLLHAVLKH GYGRWQAIVDDKDLKVQEIICKELNLPCIRLPVLGQGVAQAQNGSTSNIANAEAPSTQAQANVAGNDVAADVAQGTIDAANPALSYRDSSILFHFRDMQR RQVEFIKKRVLLLERGLNAEYQKIYFGGDIKPNEITSEEADGETKAADSSSLGSIEINAQMIDQLPQMEPIGSEEISAAACDDNPDRLALAEHYNKMCTV LEQNVHETIQISLTNHPASLKLRQGLQPLEMIFEQMNQILSPLQQKSTSEQGTLGPNKHVQAESQSNQAKLHSPSDQQKENNDNAAAVEDVEMKEATTEP KLEETIASSDEEAPHSADPVTPPKEPMCSPGTSEKDVQMVDTSNGTDTNTDAVSNENETTEKSNSGVIVLD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Potri.006G262200 [exp]	0	1	PKL.2
AT5G53020			Ribonuclease P protein subunit...		Potri.015G012000 [exp]	1.73	0.8675
AT1G30410		ATMRP13, ABCC12	ATP-binding cassette C12, mult...		Potri.004G034700 [exp]	4.47	0.8495	ATMRP12.4
AT3G07160		CALS9, ATGSL10	glucan synthase-like 10 (.1)		Potri.001G011900 [exp]	4.58	0.8546
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Potri.016G069100 [exp]	6.63	0.8798
AT5G47690			binding (.1.2.3)		Potri.006G004750 [exp]	7.74	0.8579
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Potri.003G196900 [exp]	9.21	0.8358
AT1G13120		EMB1745	embryo defective 1745 (.1)		Potri.008G183500 [exp]	9.79	0.8489
AT4G24270		EMB140	EMBRYO DEFECTIVE 140 (.1.2)		Potri.004G229732 [exp]	12.72	0.8050
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Potri.011G094100 [exp]	15.00	0.8504
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Potri.001G368600 [exp]	16.30	0.8434

Compare expression of checked genes

Potri.006G262200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.