Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54830 1182 / 0 DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein (.1) AT3G61750 78 / 5e-15 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT3G07570 73 / 3e-13 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT4G17280 65 / 1e-10 Auxin-responsive family protein (.1) AT2G04850 60 / 4e-09 Auxin-responsive family protein (.1) AT3G59070 59 / 7e-09 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT5G35735 59 / 1e-08 Auxin-responsive family protein (.1) AT3G25290 58 / 1e-08 Auxin-responsive family protein (.1.2) AT4G12980 58 / 2e-08 Auxin-responsive family protein (.1) AT5G47530 56 / 7e-08 Auxin-responsive family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G021000 [exp] 1625 / 0 AT5G54830 1197 / 0.0 DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein (.1) Potri.014G098700 [exp] 83 / 2e-16 AT3G61750 402 / 2e-138 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Potri.002G222600 [exp] 80 / 2e-15 AT2G04850 545 / 0.0 Auxin-responsive family protein (.1) Potri.014G161700 [exp] 72 / 6e-13 AT2G04850 577 / 0.0 Auxin-responsive family protein (.1) Potri.014G197500 [exp] 69 / 3e-12 AT3G07570 402 / 7e-140 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Potri.014G162000 [exp] 62 / 9e-10 AT5G47530 369 / 2e-126 Auxin-responsive family protein (.1) Potri.002G249300 [exp] 62 / 1e-09 AT3G25290 452 / 6e-159 Auxin-responsive family protein (.1.2) Potri.002G222700 [exp] 61 / 2e-09 AT5G35735 369 / 8e-126 Auxin-responsive family protein (.1) Potri.013G118300 [exp] 61 / 3e-09 AT5G47530 305 / 7e-101 Auxin-responsive family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034323 [exp] 1399 / 0 AT5G54830 1207 / 0.0 DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein (.1) Lus10041448 [exp] 1397 / 0 AT5G54830 1215 / 0.0 DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein (.1) Lus10016080 [exp] 84 / 7e-17 AT3G07570 397 / 9e-138 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10001180 [exp] 79 / 4e-15 AT3G07570 377 / 5e-130 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10012625 [exp] 77 / 3e-14 AT3G61750 400 / 7e-138 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10001162 [exp] 75 / 6e-14 AT2G04850 563 / 0.0 Auxin-responsive family protein (.1) Lus10010120 [exp] 72 / 2e-13 AT3G61750 343 / 5e-117 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10001736 [exp] 71 / 1e-12 AT2G04850 559 / 0.0 Auxin-responsive family protein (.1) Lus10021553 [exp] 59 / 3e-09 AT3G25290 165 / 5e-49 Auxin-responsive family protein (.1.2) Lus10017564 [exp] 57 / 5e-08 AT5G47530 419 / 8e-146 Auxin-responsive family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [poplar] [flax] 2heme_cytochrom PF01578 [poplar] [flax] Cytochrom_C_asm Cytochrome C assembly protein CL0559 [poplar] [flax] CBD9-like PF03351 [poplar] [flax] DOMON DOMON domain CL0559 [poplar] [flax] PF10517 [poplar] [flax] DM13 Electron transfer DM13
Representative CDS sequence Show only first row Show all	>Potri.006G262300.1 pacid=42768731 polypeptide=Potri.006G262300.1.p locus=Potri.006G262300 ID=Potri.006G262300.1.v4.1 annot-version=v4.1 ATGAATTGCAATCCTCTAATAATTTTAGGGTTAGGGTTTTTTCTCTTCAATAACTTCCTCTTCTTCGTTTCCAATGCGGATACGGGTCCATCTTGCCCGA AAACCAGCCCGTATGTCGGGTTCGAATCCAAATTCACCATGGTACGACACCAAGTACGTGGGTTTCTAACCATAGTCGATGATTGCTCTTTCAGGGTTTC TCAGTTTGATATGCTATCAGGATCCGATGTTCATTTTTGGGGCTCCATCGCGCCTGATTTTGATAATTTCACAAATGGGTTTATGATTTCTGATTATAAA CTCAATGAGACTTATAAAAATGCTAGCTTTAGTGTTAAGTTGAGTCGAAATGTTACTTGGGATCGCATCCAAGTCCTATCCATCTGTGACCTGTTGACTG AATCGGATTTTGGGCATGTAATTCTCTCAAATGGGTCTGATTTGGCTCCCACATTGAGTCCAGATTTGGCTCCGTCACCGGCAAGTAATTATAGCATGGG CGAGGAAGGCAAATTTGGTCCTTTTAGAGTCCCGACAATGTTTGATAATTGTAAGGTTTTGTCAAATGATTATAGGATTAGGTGGAGTTTGAGCGCGGAG AGGGATTTTATTGATATAGGATTAGAGGCCGCTATTGCTATACAGAATTATATGGCATTTGGGTGGGCAGATCCGAAGGCTAATTCGGAGGTCATGATTG GTGGCGATGTGGCGGTGGCGGGGTTTACGGAGGAAGGAATGCCTTTTGTTGATGATTTTTATATTACTAAGTATAGTGAATGTACCATAAATAAGGATGG ATCAGCTCATGGGGTTTGTCCTGATACGATATATGAAGGATCGGATCCTGTTGGATTGGTGAACAATACGAAGTTGATTTATGGGCATAGGAAGGATGGG GTTTCGTTTATTAGGTATAGAAGGCCGATGGTTTCGGTAGATACAAAGTATGATTTGCCGGTGAAGTATACAGAGAATGTGACAGTGATTTGGGCTTTGG GGTTGATGAGGCCACCCGATACTTTTCGGCCTTACTATTCACCGCAGAATCATGGAGGGCCAATGTCGGTGACTTATGGGCATTTGGTGCTTAATGTTTC TGAGCAGGTGAATGAGTGTTTGGGACCCTTGGATGCTGCAAACAAGGAGGATCAGGATTTGGTTATAGCAGATGCAAATAAGCCTCTTGTTGTTACTACT GGTCCTGCAGTTCATTACCCCAACCCACCTAACCCTTCAAAAGTCTTGTACATTAATAAGAAGGAGGCTCCTGTTTTGAAAGTTGAAAGAGGGGTGCCTG TGAGGTTTTCGGTGCAAGCTGGACATGATGTTGCATTGTACATTACTTCGGATTTGATTGGTGGTAATGCAACATTGAGGAACAAGACAGAGACTATTTA TGCGGGAGGGCCTGAAGCTGAAGGTGTTCTGGCTAGTCCAATGGAATTAATCTGGGAGCCAGATAGGAATACCCCAGATCAGGTGTACTATCAATCTTTG TATCAGAAGAAGATGGGCTGGAGAGTTCAGGTGGTTGATGGTGGTTTGTCTGATATGTATAACAACAGTGTCCTTTTGGATGATCAGCAAGTCACATTCT TCTGGACGTTGTCAAAAGATTCTATATCTATTGCTGCCCGGGGTGAGAAAAAGAGTGGTTATATTGCAATAGGATTTGGTATTGGAATGGTTAACAGCTA TGCTTATGTGGGTTGGGTTGATGATACTGGTAAAGGGCATGTCAATTCATACTGGATTGATGGAAGGGATGCCTCAAGGGTGCATCCAACAAATGAGAAT TTGACCAATATAAGGTGCAAGTCAGAAAATGGGATCATTACCTTCGAGTTTGTACGACCTTTAAAACCATGTAGCCACAATAATCGGGTAGAGTGTAAAA ATATTATTGATCCCACAACTCCTCTCAAGGTCATATGGGCATTGGGCACTAAATGGTCAGATGAACACCTAAATGAGAAGAATATGCATTCTGAAACTAG CCATAGGCCTATACGGGTGTTGCTTATGGGTGGTTCTGCAGAAGCAGAGCAAGATTTACGGCCGGTGTTAGCTGTACATGGGTTCATGATGTTCCTTTCA TGGGGTATTTTGCTTCCTGGTGGAATTCTGGCTGCTAGATACTTGAAGCATGTGAAGGGGGATAGCTGGTACCAGATTCATGTTTCCTTGCAGTACTCAG GTTTAGCAATTCTCCTACTTGGCCTTCTTTTTGCAGTGGCTGAGCTTCGGGGCCTCAATATCAGCTCAGCTCATGTTAAGTTTGGGCTTGCTGCTATATT TCTGGCATGTGTACAACCAGTGAATGCCTCCATGAGGCCTAAAAAATCTGCTAATGGAGAGGAGGTTTCCTCAAAAAGGCGTCTCTGGGAGTATTTTCAC TTCATTGCTGGTAGATCTGCCATCATTGTAGGAATTGCGGCACTTTTCAGTGGAATGAAGCATTTGGGAGATAGATATGGAGATGAAAATGTTCATGGAT ATATCTGGGCACTAATTCTTTGGTTCGTGATTGGTACAATGATCGTCATGTATCTGGAATATCATGAAAAACAACGAAGGAGGGACAGGGTATTTGGAAG AAGCAATTGGGTTTTAGGTAACCTTGAAGAAGATGATTCTAGTGACCTCCTGAATCCAGCCAGGGCGTCATCACAAAAAGATAAACAACATTCTGGACTG ATGGAAGTTCAGTTAGAACCTTTGAACAGATGA
AA sequence Show only first row Show all	>Potri.006G262300.1 pacid=42768731 polypeptide=Potri.006G262300.1.p locus=Potri.006G262300 ID=Potri.006G262300.1.v4.1 annot-version=v4.1 MNCNPLIILGLGFFLFNNFLFFVSNADTGPSCPKTSPYVGFESKFTMVRHQVRGFLTIVDDCSFRVSQFDMLSGSDVHFWGSIAPDFDNFTNGFMISDYK LNETYKNASFSVKLSRNVTWDRIQVLSICDLLTESDFGHVILSNGSDLAPTLSPDLAPSPASNYSMGEEGKFGPFRVPTMFDNCKVLSNDYRIRWSLSAE RDFIDIGLEAAIAIQNYMAFGWADPKANSEVMIGGDVAVAGFTEEGMPFVDDFYITKYSECTINKDGSAHGVCPDTIYEGSDPVGLVNNTKLIYGHRKDG VSFIRYRRPMVSVDTKYDLPVKYTENVTVIWALGLMRPPDTFRPYYSPQNHGGPMSVTYGHLVLNVSEQVNECLGPLDAANKEDQDLVIADANKPLVVTT GPAVHYPNPPNPSKVLYINKKEAPVLKVERGVPVRFSVQAGHDVALYITSDLIGGNATLRNKTETIYAGGPEAEGVLASPMELIWEPDRNTPDQVYYQSL YQKKMGWRVQVVDGGLSDMYNNSVLLDDQQVTFFWTLSKDSISIAARGEKKSGYIAIGFGIGMVNSYAYVGWVDDTGKGHVNSYWIDGRDASRVHPTNEN LTNIRCKSENGIITFEFVRPLKPCSHNNRVECKNIIDPTTPLKVIWALGTKWSDEHLNEKNMHSETSHRPIRVLLMGGSAEAEQDLRPVLAVHGFMMFLS WGILLPGGILAARYLKHVKGDSWYQIHVSLQYSGLAILLLGLLFAVAELRGLNISSAHVKFGLAAIFLACVQPVNASMRPKKSANGEEVSSKRRLWEYFH FIAGRSAIIVGIAALFSGMKHLGDRYGDENVHGYIWALILWFVIGTMIVMYLEYHEKQRRRDRVFGRSNWVLGNLEEDDSSDLLNPARASSQKDKQHSGL MEVQLEPLNR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54830			DOMON domain-containing protei...		Potri.006G262300 [exp]	0	1
AT5G54830			DOMON domain-containing protei...		Potri.018G021000 [exp]	1.00	0.7889
AT2G27260			Late embryogenesis abundant (L...		Potri.009G019800 [exp]	3.00	0.7834
AT1G25370			Protein of unknown function (D...		Potri.010G122700 [exp]	3.00	0.7253
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Potri.017G078800 [exp]	5.91	0.7279	GN.2
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Potri.002G088000 [exp]	6.32	0.7236
AT1G67930			Golgi transport complex protei...		Potri.005G203900 [exp]	6.70	0.7466
AT2G01480			O-fucosyltransferase family pr...		Potri.010G111500 [exp]	14.62	0.7843
AT2G33710	AP2_ERF		Integrase-type DNA-binding sup...		Potri.005G087200 [exp]	19.59	0.7349
AT5G13500			unknown protein		Potri.009G070000 [exp]	20.49	0.6490
AT1G05520			Sec23/Sec24 protein transport ...		Potri.001G307400 [exp]	26.98	0.6723

Compare expression of checked genes

Potri.006G262300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.