Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13940 53 / 4e-07 Plant protein of unknown function (DUF863) (.1) AT1G69360 51 / 1e-06 Plant protein of unknown function (DUF863) (.1) AT1G26620 49 / 6e-06 Plant protein of unknown function (DUF863) (.1) AT5G57340 42 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G020800 [exp] 599 / 0 AT1G69360 54 / 2e-07 Plant protein of unknown function (DUF863) (.1) Potri.010G162000 [exp] 52 / 6e-07 AT1G13940 437 / 2e-136 Plant protein of unknown function (DUF863) (.1) Potri.008G092800 [exp] 52 / 6e-07 AT1G13940 459 / 2e-144 Plant protein of unknown function (DUF863) (.1) Potri.018G090000 [exp] 49 / 2e-06 AT5G57340 72 / 8e-15 unknown protein Potri.005G145800 [exp] 42 / 0.0004 AT5G67390 87 / 1e-21 unknown protein Potri.004G125900 [exp] 43 / 0.0005 AT1G69360 149 / 2e-36 Plant protein of unknown function (DUF863) (.1) Potri.006G165500 [exp] 41 / 0.001 AT5G57340 62 / 2e-11 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036807 [exp] 49 / 1e-05 AT1G69360 254 / 9e-73 Plant protein of unknown function (DUF863) (.1) Lus10037122 [exp] 46 / 5e-05 AT1G69360 257 / 8e-74 Plant protein of unknown function (DUF863) (.1) Lus10034722 [exp] 44 / 0.0002 AT1G13940 106 / 3e-23 Plant protein of unknown function (DUF863) (.1) Lus10011080 [exp] 43 / 0.0002 AT5G67390 91 / 7e-23 unknown protein Lus10019291 [exp] 42 / 0.0004 AT5G67390 95 / 2e-24 unknown protein Lus10011531 [exp] 41 / 0.0007 AT5G67390 97 / 3e-25 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G262600.1 pacid=42769155 polypeptide=Potri.006G262600.1.p locus=Potri.006G262600 ID=Potri.006G262600.1.v4.1 annot-version=v4.1 ATGGATCAAGTACGGAAGACAATGATGCAACATGAAGCTTTGTTCAAGGAACAGGTGCAGGCACTGCACAGACTGTACAATATCCAGAAAACTGCAATGC AGGAAACAAGGAGAAGAAATTATTCTCAGGCTCAAGTGTTTGCATTTAGTCCTGAAAGTCTTGTGCTTGTGGACGGCCAATTTTGTGGTTCTGTTTTGGA AGGGAAACCTTTGAGGCCGCCGGTCTATATTGCTGGTCGAGCACATAAGCAAGATGCTTTGGGTCTGTCTTTGAGTCCCTTTTGCACACTCAAAGAGATT AAAGGCAGTGGTTCGTTATGGATTGATGGCATGGGGGCTGAAACTTTCCTCCCTGCTCATAGTAAACCTTTGAGAAATTTTGATCTTGAAAAACTCCCAG AAGACGATGCCGATGAGTCTTCTGATCTTGAAGGAACAGCAGAGGAATGGAATGGAAGCAATTTGCCAGATTCTACTGAATCGTTTCAAGATCTTGGAAG CAGTGGTAAAATTGCATCAACGGGTCCAAAATCAGAACCATCCAATAGTCAAGTTGGCATGGACTCATTTCCCAAAGATCCCATCACATGTTCTCAAGAT TCTTCAATCCTGGAACCTCAATATTGTGAGTCAAAAGAACTTGATGAGTTCATCATCCAAAGACCGATTCACTTGGAGACAAACACCAATCCGGAACAGC AAGATCTGAACTTACCTGCTGTTGCAAAGGACTCAAGCAATGGCAGCAATAGCATTGAGTCCCAGGACGCAGAGTTCTGCAAGAAAAAAGATACTCGCGA GGAAGACCTGGCAAGCCCCAGCAGCAAGGAATTCTTCTTATCTGAATGCGAAGAAGTGGCCCTCATCAACCAAGATGTTTGGAGACCTTCAGTCTCCTCT ACCAATACAGATTCTGAAATCAAACAAACAGACAGCTACAGACATTCAAACAGCGAACCTGGAAACATGACAAGCTCGGAGAAGCCTCCTGTTGCAACAG AGGACAATCAGAACAGGAAGGGTAAATCAATCCTGTATGAAGAGTGTGAAACAACGGCAGCTGAGATTTTGCTCAGTTTTGCACCCAATAGACCACAGGC TGTTACTAAAAGGCATGCAGTGGAAACCGAGTCAGGTAAATCTTATGTAGACTTTGCAACTACTGAAGAGAAGCCAAATTTGTGTCAGAAAAGATGTGCA AACTTCAGCAATGGCGGTAGACTATACGAATCCTTGAGCTGGGAAAAATCAGCTAATTGGATGACGACTGTTAAAAGACAGCGGCAACTAGTTCCTGCAA GAATTGTTCCTTGTAACGTTGTTAATCTTGCAGATGTAAACATCACCTTATGA
AA sequence Show only first row Show all	>Potri.006G262600.1 pacid=42769155 polypeptide=Potri.006G262600.1.p locus=Potri.006G262600 ID=Potri.006G262600.1.v4.1 annot-version=v4.1 MDQVRKTMMQHEALFKEQVQALHRLYNIQKTAMQETRRRNYSQAQVFAFSPESLVLVDGQFCGSVLEGKPLRPPVYIAGRAHKQDALGLSLSPFCTLKEI KGSGSLWIDGMGAETFLPAHSKPLRNFDLEKLPEDDADESSDLEGTAEEWNGSNLPDSTESFQDLGSSGKIASTGPKSEPSNSQVGMDSFPKDPITCSQD SSILEPQYCESKELDEFIIQRPIHLETNTNPEQQDLNLPAVAKDSSNGSNSIESQDAEFCKKKDTREEDLASPSSKEFFLSECEEVALINQDVWRPSVSS TNTDSEIKQTDSYRHSNSEPGNMTSSEKPPVATEDNQNRKGKSILYEECETTAAEILLSFAPNRPQAVTKRHAVETESGKSYVDFATTEEKPNLCQKRCA NFSNGGRLYESLSWEKSANWMTTVKRQRQLVPARIVPCNVVNLADVNITL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13940			Plant protein of unknown funct...		Potri.006G262600 [exp]	0	1
AT1G76430		PHT1;9	phosphate transporter 1;9 (.1)		Potri.002G005500 [exp]	1.41	0.9751	PtrPHT1-9
AT3G14770		SWEET2, AtSWEET...	Nodulin MtN3 family protein (....		Potri.001G355500 [exp]	1.73	0.9619
AT5G52780			Protein of unknown function (D...		Potri.004G072900 [exp]	2.44	0.9695
AT5G53350		CLPX	CLP protease regulatory subuni...		Potri.015G012900 [exp]	2.44	0.9571
AT1G01180			S-adenosyl-L-methionine-depend...		Potri.014G103800 [exp]	2.82	0.9609
					Potri.005G100750 [exp]	3.46	0.9500
AT2G05810			ARM repeat superfamily protein...		Potri.014G158700 [exp]	6.48	0.9381
AT1G53230	TCP	TCP3	TEOSINTE BRANCHED 1, cycloidea...		Potri.001G375800 [exp]	7.00	0.9565
AT3G20930			RNA-binding (RRM/RBD/RNP motif...		Potri.008G022280 [exp]	9.00	0.9533
AT5G52660	MYB		Homeodomain-like superfamily p...		Potri.017G146800 [exp]	9.16	0.9350

Compare expression of checked genes

Potri.006G262600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.