Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31890 545 / 0 ARM repeat superfamily protein (.1.2) AT2G25130 458 / 5e-158 ARM repeat superfamily protein (.1) AT2G27430 126 / 3e-31 ARM repeat superfamily protein (.1) AT2G23140 109 / 4e-25 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT3G46510 107 / 2e-24 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT2G28830 102 / 9e-23 AtPUB12 PLANT U-BOX 12 (.1) AT1G67530 102 / 1e-22 ARM repeat superfamily protein (.1.2) AT1G24330 102 / 2e-22 ARM repeat superfamily protein (.1) AT3G54790 97 / 5e-21 ARM repeat superfamily protein (.1.2) AT1G23030 95 / 2e-20 PUB11 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G055500 [exp] 147 / 6e-39 AT2G27430 478 / 1e-167 ARM repeat superfamily protein (.1) Potri.011G065300 [exp] 140 / 3e-36 AT2G27430 449 / 2e-156 ARM repeat superfamily protein (.1) Potri.001G238500 [exp] 114 / 9e-27 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.010G113900 [exp] 108 / 6e-25 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1) Potri.009G029600 [exp] 108 / 8e-25 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.008G128600 [exp] 105 / 7e-24 AT1G23030 697 / 0.0 ARM repeat superfamily protein (.1) Potri.005G144700 [exp] 102 / 1e-22 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.007G051000 [exp] 101 / 3e-22 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.002G037700 [exp] 99 / 1e-21 AT3G54790 707 / 0.0 ARM repeat superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041017 [exp] 622 / 0 AT4G31890 621 / 0.0 ARM repeat superfamily protein (.1.2) Lus10013459 [exp] 605 / 0 AT4G31890 703 / 0.0 ARM repeat superfamily protein (.1.2) Lus10001881 [exp] 145 / 4e-38 AT2G27430 410 / 7e-141 ARM repeat superfamily protein (.1) Lus10016565 [exp] 117 / 9e-28 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10013918 [exp] 111 / 6e-27 AT2G27430 337 / 4e-114 ARM repeat superfamily protein (.1) Lus10040834 [exp] 115 / 7e-27 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10043471 [exp] 110 / 3e-25 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10034113 [exp] 110 / 4e-25 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10019308 [exp] 102 / 2e-22 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10011514 [exp] 99 / 2e-21 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G263100.2 pacid=42770650 polypeptide=Potri.006G263100.2.p locus=Potri.006G263100 ID=Potri.006G263100.2.v4.1 annot-version=v4.1 ATGGCCAAGTGTCACACCAACAACATAGGTTCTTTACTCCTCGACCACACCTCTACCACCGCCACCGCCACCGGAACCCACCATTCCCGTCTATGGACAG CCTTCTCCCGCAAAATTTTTGATGCTGTCAGCTGTGGTGGCAGCTCACGGTATCGCCATTACGAAGATGACATCCCCTCCTTCACCACCACCGCTACCAA TGCCACCGCTAGTGTTTCAAGAGAGAAACAGAACAAGACAGCGCTTAGTGTTACTAATAATTCAAGAAAAGAAGAAAACGGGAATCAGCAAAACTTGAAT GTTGAAGGAGAGAAAGGAAGAGTTAAAGCAAGAAATGGGAAATCAGAGAAGTTGTCAGATCTGTTGAGTATGGCGGAGGCGGAGAGTGAGAGTGAGACCA GGAAGAAAGTTGAGGTTTTGGAAGGGATGAAAAGGGTTGTTAGAGAATTGCAAGTTGATGAAGGAGTGAAGAGAAGAGAAGCTGCATGTAATGTAAGGTT GTTGTGTAAAGAAGATGGGAAAGCAAGAGTTACACTTTCCATGTTAGGAGCCATTCCTCCTCTTGTTGGAATGCTTGATTTGGAGGACTTTGAGTGTCAA ATCGATGCTCTTTATGCTTTGCTTAATCTTGGGATCGGAAATGATGTGAACAAAGCTGCCATTGTTAAAGCAGGAGCTGTTCACAAGATGCTAAAGATCA TAGAATCTCCAAATGCTGCAAATCCATCTGTATCTGAAGCGATAGTGGCGAATTTTCTTGGGTTGAGTGCATTGGATTCGAATAAACCGATCATCGGCTC TTCGGGTGCAATCCCCTTCTTGGTGAATTCCCTCAAGGATTTGGATCACAAAAATAGGTCCCAAGCACAACAAGATGCTCTTAGAGCTCTGTACAATCTT TCGATATCCCCATCAAACATCTCATTTATTCTAGAAACAGATTTGATCTCATTTCTGATGGGTTCGCTGGGAGACATGGAAGTAAGTGAAAGAGTTCTTT CAATTTTGAGCAATGCAGTATCAACCCCGGAAGGTAGAAAGGCAATTAGCGCCATGCCAGATGCTTTCCCTATTTTGGTTGATGTCTTGAATTGGACCGA TTCACCAGGTTGCCAAGAGAAGGCATCTTACATATTGATGGTGATGGCACACAAAGCATATGGAGATAGACAGGCCATGATTGAGGCAGGAATCGTATCA TCCTTGCTCGAATTAACGCTTTTGGGTAGTACTTTGGCGCAGAAGAGGGCTTCAAGGATCTTGGAATGTTTGAGGGTTGATAAAGGGAAACAAGTTTCGG GGAATTATGGTGGCAATATGGGTGCAGCAGTGTCTGCTCCTATTTATGGAACTCCATCATCTTCTTCAAACCCCAACCTCGTGTCAAAGGAGTGTCTAGA GGAGACAGAAGATATGATGAGCGAGGAAAAGAAAGCTGTGAAACAATTAGTCCAGCAGAGTTTGCAGAACAATATGAGGAGAATCGTCAAGAGGGCCAAT TTGCCGCAAGATTTTGTTCCATCAGAACATTTCAAGTCCCTCACATCAAGTTCAACCTCCAAGAGTTTACCATTTTGA
AA sequence Show only first row Show all	>Potri.006G263100.2 pacid=42770650 polypeptide=Potri.006G263100.2.p locus=Potri.006G263100 ID=Potri.006G263100.2.v4.1 annot-version=v4.1 MAKCHTNNIGSLLLDHTSTTATATGTHHSRLWTAFSRKIFDAVSCGGSSRYRHYEDDIPSFTTTATNATASVSREKQNKTALSVTNNSRKEENGNQQNLN VEGEKGRVKARNGKSEKLSDLLSMAEAESESETRKKVEVLEGMKRVVRELQVDEGVKRREAACNVRLLCKEDGKARVTLSMLGAIPPLVGMLDLEDFECQ IDALYALLNLGIGNDVNKAAIVKAGAVHKMLKIIESPNAANPSVSEAIVANFLGLSALDSNKPIIGSSGAIPFLVNSLKDLDHKNRSQAQQDALRALYNL SISPSNISFILETDLISFLMGSLGDMEVSERVLSILSNAVSTPEGRKAISAMPDAFPILVDVLNWTDSPGCQEKASYILMVMAHKAYGDRQAMIEAGIVS SLLELTLLGSTLAQKRASRILECLRVDKGKQVSGNYGGNMGAAVSAPIYGTPSSSSNPNLVSKECLEETEDMMSEEKKAVKQLVQQSLQNNMRRIVKRAN LPQDFVPSEHFKSLTSSSTSKSLPF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31890			ARM repeat superfamily protein...		Potri.006G263100 [exp]	0	1
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.016G070500 [exp]	2.00	0.8721
AT4G20940			Leucine-rich receptor-like pro...		Potri.001G465800 [exp]	2.44	0.8723
AT1G69080			Adenine nucleotide alpha hydro...		Potri.010G140200 [exp]	8.48	0.8333
AT1G69160			unknown protein		Potri.010G154200 [exp]	9.16	0.8287
AT3G21620			ERD (early-responsive to dehyd...		Potri.002G226800 [exp]	9.59	0.8569
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Potri.003G204500 [exp]	15.96	0.8181
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.001G217700 [exp]	16.30	0.8140
AT5G25510			Protein phosphatase 2A regulat...		Potri.018G073925 [exp]	16.94	0.8388
AT2G05790			O-Glycosyl hydrolases family 1...		Potri.014G158400 [exp]	18.81	0.8437
AT2G25270			unknown protein		Potri.018G023200 [exp]	20.42	0.8608

Compare expression of checked genes

Potri.006G263100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.