Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25110 345 / 3e-122 AtSDF2, ATSDL, SDF2 ATSDF2-LIKE, Arabidopsis thaliana STROMAL CELL-DERIVED FACTOR 2-like protein precursor, stromal cell-derived factor 2-like protein precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G020700 [exp] 389 / 2e-139 AT2G25110 347 / 7e-123 ATSDF2-LIKE, Arabidopsis thaliana STROMAL CELL-DERIVED FACTOR 2-like protein precursor, stromal cell-derived factor 2-like protein precursor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010594 [exp] 355 / 3e-126 AT2G25110 350 / 4e-124 ATSDF2-LIKE, Arabidopsis thaliana STROMAL CELL-DERIVED FACTOR 2-like protein precursor, stromal cell-derived factor 2-like protein precursor (.1) Lus10019365 [exp] 352 / 5e-125 AT2G25110 348 / 2e-123 ATSDF2-LIKE, Arabidopsis thaliana STROMAL CELL-DERIVED FACTOR 2-like protein precursor, stromal cell-derived factor 2-like protein precursor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0066 [poplar] [flax] Trefoil PF02815 [poplar] [flax] MIR MIR domain
Representative CDS sequence Show only first row Show all	>Potri.006G263200.1 pacid=42769436 polypeptide=Potri.006G263200.1.p locus=Potri.006G263200 ID=Potri.006G263200.1.v4.1 annot-version=v4.1 ATGGCTCTTGCTTTCTTCGGTCTCTCTATCTTCCTCTTCCTCAATCTTGATCTTGACGGCGCTTCCTTCTCCCCTGCCTCCGCCGCCTCTGATTCCGGTC CCGAGATTACTTATGGGAGTGTTGTTAAGCTGATGCACGAGAGGACGAAGTATCGACTGCATTCACATGATGTGCCATATGGTTCTGGAAGTGGGCAGCA ATCTGTTACTGGGTTTCCTAATGTTGACGATGCTAATAGCTATTGGATTGTTAGGCCTCAGCCAGGGACAAATGCTAAACAAGGTGACTCCATTAAAACT GGGACAATTTTCCGTTTGCAACACATGAAGACTAGGAAGTGGCTGCACAGTCATTTGCATGCATCCCCAATCTCTGGCAACCTAGAGGTTAGTTGCTTTG GGGGAGAGAATGAATCTGATACCGGAGATTACTGGAGGCTTATGATTGAAGGGAGTGGAAAGACATGGAAGCAAGACCAAAGGATTCGTCTTCACCATGT TGACACCAATGGCTACTTGCATAGTCATGACAAGAGATACCAACGAATTGCTGGGGGGCAGCAGGAGGTGTGCGGTGTCCGAGAAAAGCGTGCTGACAAT GTTTGGCTGGCAGCAGAAGGCATATACCTCCCTGTTACTGAAAGCAAGTAA
AA sequence Show only first row Show all	>Potri.006G263200.1 pacid=42769436 polypeptide=Potri.006G263200.1.p locus=Potri.006G263200 ID=Potri.006G263200.1.v4.1 annot-version=v4.1 MALAFFGLSIFLFLNLDLDGASFSPASAASDSGPEITYGSVVKLMHERTKYRLHSHDVPYGSGSGQQSVTGFPNVDDANSYWIVRPQPGTNAKQGDSIKT GTIFRLQHMKTRKWLHSHLHASPISGNLEVSCFGGENESDTGDYWRLMIEGSGKTWKQDQRIRLHHVDTNGYLHSHDKRYQRIAGGQQEVCGVREKRADN VWLAAEGIYLPVTESK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25110		AtSDF2, ATSDL, ...	ATSDF2-LIKE, Arabidopsis thali...		Potri.006G263200 [exp]	0	1
AT3G62600		ATERDJ3B	DNAJ heat shock family protein...		Potri.002G198000 [exp]	2.44	0.8076
AT5G09570			Cox19-like CHCH family protein...		Potri.009G078100 [exp]	3.46	0.7847
AT2G19690		PLA2-BETA	phospholipase A2-beta (.1.2)		Potri.006G149700 [exp]	4.00	0.7837
AT5G42020		BIP2, BIP	luminal binding protein, Heat ...		Potri.003G143600 [exp]	4.69	0.7916	BIP.1
AT4G26780		MGE2, AR192	mitochondrial GrpE 2, Co-chape...		Potri.011G089000 [exp]	10.95	0.7790
AT2G25110		AtSDF2, ATSDL, ...	ATSDF2-LIKE, Arabidopsis thali...		Potri.018G020700 [exp]	10.95	0.7423
AT5G61790		CNX1, ATCNX1	calnexin 1 (.1)		Potri.015G109200 [exp]	13.74	0.7284	CNX1.1
AT5G27430			Signal peptidase subunit (.1)		Potri.006G234600 [exp]	14.07	0.7527	SPP.3
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Potri.017G102000 [exp]	14.14	0.7277	NEMDH.1
AT5G64670			Ribosomal protein L18e/L15 sup...		Potri.016G002400 [exp]	18.52	0.7491

Compare expression of checked genes

Potri.006G263200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.