Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31880 422 / 2e-132 unknown protein AT1G15940 243 / 8e-67 Tudor/PWWP/MBT superfamily protein (.1) AT1G80810 223 / 8e-61 Tudor/PWWP/MBT superfamily protein (.1.2) AT5G47690 189 / 1e-48 binding (.1.2.3) AT1G77600 116 / 4e-26 ARM repeat superfamily protein (.1.2.3) AT5G10950 89 / 3e-18 Tudor/PWWP/MBT superfamily protein (.1) AT4G32970 79 / 1e-14 unknown protein AT4G02070 56 / 2e-07 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) AT1G05830 52 / 2e-06 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) AT4G32620 52 / 3e-06 Enhancer of polycomb-like transcription factor protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G020400 [exp] 1194 / 0 AT4G31880 389 / 3e-120 unknown protein Potri.001G046500 [exp] 276 / 2e-78 AT4G31880 267 / 1e-76 unknown protein Potri.003G181300 [exp] 256 / 1e-71 AT1G80810 231 / 3e-64 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.018G109600 [exp] 219 / 6e-60 AT4G31880 180 / 3e-47 unknown protein Potri.006G186700 [exp] 202 / 6e-54 AT4G31880 167 / 8e-43 unknown protein Potri.016G005400 [exp] 172 / 3e-43 AT5G47690 1698 / 0.0 binding (.1.2.3) Potri.006G004750 [exp] 164 / 1e-40 AT5G47690 1681 / 0.0 binding (.1.2.3) Potri.002G084300 [exp] 127 / 3e-29 AT1G77600 1136 / 0.0 ARM repeat superfamily protein (.1.2.3) Potri.006G246200 [exp] 54 / 9e-07 AT4G32620 1021 / 0.0 Enhancer of polycomb-like transcription factor protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018332 [exp] 560 / 0 AT4G31880 464 / 2e-149 unknown protein Lus10017121 [exp] 554 / 0 AT4G31880 473 / 2e-152 unknown protein Lus10026078 [exp] 203 / 7e-57 AT4G31880 228 / 1e-66 unknown protein Lus10002307 [exp] 189 / 3e-51 AT4G31880 214 / 4e-61 unknown protein Lus10039082 [exp] 174 / 6e-44 AT5G47690 1661 / 0.0 binding (.1.2.3) Lus10038777 [exp] 173 / 2e-43 AT5G47690 1579 / 0.0 binding (.1.2.3) Lus10018180 [exp] 114 / 2e-25 AT1G77600 864 / 0.0 ARM repeat superfamily protein (.1.2.3) Lus10025655 [exp] 110 / 3e-24 AT1G77600 899 / 0.0 ARM repeat superfamily protein (.1.2.3) Lus10030133 [exp] 61 / 1e-09 AT1G15940 63 / 4e-11 Tudor/PWWP/MBT superfamily protein (.1) Lus10009948 [exp] 54 / 5e-08 AT1G15940 56 / 1e-09 Tudor/PWWP/MBT superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [poplar] [flax] Tudor PF09465 [poplar] [flax] LBR_tudor Lamin-B receptor of TUDOR domain
Representative CDS sequence Show only first row Show all	>Potri.006G263300.1 pacid=42769366 polypeptide=Potri.006G263300.1.p locus=Potri.006G263300 ID=Potri.006G263300.1.v4.1 annot-version=v4.1 ATGGCGTCGAATAGTAGTGATAAAGAGCTTGAACAACAGTTACTGGAAGCTGGAAACAAGCTTCTTAACCCTCCTCCTTCTGTTGATGAGTTGCTCTCTC TTCTTGACCAAGTTGAGAATTGTTTGTCAAAGGTGGAGCAGTCGCCTGTAAAATCAATGCAAAATGCACTTTCTCCTTCACAGAATGCTCTTGTCACCGA TCAATTGTTCAGGCATTCTAACATTGACGTGAAAGTTGCTGTTGCCTCATGCATTAGTGAGATAACAAGAATAACCGCGCCAGATGCACCTTATGATGAT GATCGAATGAAGGAGGTATTTCAGCTGATTGTATCATCGTTTGAAAACCTAGATGACAAATCTAGCCAGTCATATGTCAAGAGGGCCTCAATTCTTGAAA CTGTTGCGAAGGTTAGGTCATGTGTGGTGATGCTGGATCTTGAATGTGATGCACTGATAATTGAGATGTTCCAGCACTTCTTTAAGGCTATAAGGGATCA TCACCCAGAAGATGTCTTTTCATCAATGGAGACCATCATGTCCCTTGTCTTAGAAGAAAGTGAAGATATTTCTGTGGAATTACTGTCACTTCTACTAGCT AGTGTGAAAAAGGGGGATGAGGAAGTTCTACCTGTTGCTCGGAGGTTGGGTGAGGAAGTACTTGAAAGCTGTGCTGCGAAGGTTAAACCTTACCTTATAC AGACTGTGAAGTCTTTGGGCGTATCTTTAGATGACTACAGTGACATTGTTGGTTCAATATGCCAAGAAATATCTGGTTCTGTTGAGCAGAATGATGTCCA TGCTGGTGATGAAAATAAGGTTGAAGAGAGCAAGCCAGTTGGGCCATCATCCGATGCTGCTGCTTCTCAGGTCAATGAAGAGGAAACAACAGAAGTGGCA ACTCCTGAACAAGCTGAACCTGCAAATGACAAATGTCCAAAGTCAGCTGTGAGCAATGGTGTCGCACAGATGGAGGAAGATGACTCCTTAGCAGATTCAG ATTCCATGAAGAAGCAGGAGGATGATAACAAAACTGATCAGTTGAAAAGCATTGATTTGCCAAGTACTGCTGAACCTGATTTTTCAAATGCTGAAAGGGT AGTAGTAAATACAGAAAGTGAGGCAGAACAGACAAGCAAGAAGAGTGAGAAGTCTCCAACAAAATTGGCCGAGCCTTCAGAGAGTTCTCGTGTTGACTCT GAGAAGAAAGCTGAGGAACTCCCTGGCAATAAAATTCACAGCGAGGATGTTCCTGGTTCTCCTCATAAAGATCAACCTGTTGAGGAAGCAATATCTTCTG AGAATGTAAAAGAAACTGGCAGTCAGCCTCCCTCACCTAAGGCATTAGAGGGTGATTCTGTACCTGTTGCTTCCCCATCTGTTAGTGAAAACCTTCCTGA TGAAAGTTTTTCCAAAAAGGGTGGACGAGCAAAGAAAAAAGAGAGCTTGAACAAACATTCTGCACCATCTTCTGATGATGTACCAAACAAGTTATCTGAT GGAACAAGTGGTTCAGAAGCAAAACTGCATAAATGCTCTGGAAAAGAGGCACCTGCTGGGACTTCAAGTGAGGATAAGACACCAATGAGGACAGATGCAT CCAAGAAGGAAAGTGACACCACTGGTGAGCCAGAAGCAAAACCACTGAAGCAGTCATCTAAAAAGGTGGACACATTGAAGGAAAGCGACACCACTAATGA ACCAGAGGCAAAAGCAAGGAAGCAGTCATCTAAAAAGGTGGATGCATCCAGGAAAGAAAGTGACATCAGTGGTGAACCAGAGGCTAAACTGCCGAAGCAG TCATCTAAAAAGGCGGGCACATTGAAGGAAAGCGACACCACTAATGAACCAGAGGCAAAAGCAAGGAAGCAGTCATCTAAAAAGGTGGATGCATCCAAGA AGGAAAGTGACACCAGTGGTGAACCAGAGGCTAAACTGCCGAAGCAATCATCTAAAAAGATGGACGCATCCAAGAAAGAAAGCAACACCACTGATGAATC GGAGGCAAAATTGCTGAAGCAGTCGTCTAAAAAAGTGGATGGAAGCAGCAACAACAACAATGATGGATCAACTTTAAAGCAATTCGAGGATAAGAAACGG CAGAGTCATGGAAAAGCAGTTTCTGAAAAGCATGTAACCAAAAGTTTAATGAAAGATGATGACAAAGAAAAGACCCATTCAACCAAGTCAGCTGCAAAAT CAGCAAAAGAGGAACATCACTTAGAGGAGACCCCTGTGACTAGCACCAAGAGGAAGCGTGCTGCTGGTGATGAAAAAGCACCTGATATTAAAGAATTTGA TGAAAATGTGGTTGGTTCAAAGGTTAAAGTATGGTGGCCAAAAGATCGCCAATTTTATGAAGGTAAAATTGTATCTTTCGACTCGATTAAGAAGAAGCAT AAGGTCTTATATACTGATGGCGATGAAGAAATTTTAATTCTCAAAAGGCAAAAATTTGAGTTGATTGGTGATGACTCTGAGTCAGACAAGGAAGAAGCAG CAGATCACTCAAGTCCTGAGACCTCTTCTGAAACCAGGCCCCTGAAGAAGAGAATGAAAACAAATTCTGACAAGTCAACTAAGCAAGGAAAGGGGGATGA TTCCTCAAAAAGGGGTAGTGGAGCTTCCTCCAGCAAATCCAAAAGTGCTGCAGCAAAATCTGGAGGAAAGTCAAAGGAAGTCAGTAAAACTGGTGGGAAA TCCGTGGACGACTCTAAAGTTAAGAAATCAGATGATCATGGCAAAAACAAGGATCATACCCCTAAAAGTGGAAGTAAATCTGATGTTGCTTCCGAAACTG CCAGCAAATCCAAAAATGATGACTTGGTGACATCCAAGGCTAGCAAGTCCAAAGAAGATGAGACAAGCACGCCCAAACCCTCCAAGTCCAAGCAAGAAAC CCCGAAGACTGGCAAGTCCAGGCATGATCCCCCAAAGGTTTCCTCCTCTAATACCAAAGGTAAAGCCTCAAAAAGTGGTGGCAAATCTAATGTCAACGGC GCTGGTAAGTTGAAATCAAGCTCATCAAAGGTGAAAGAAATTGATGATGAAGAGACCTCAACAGATTCAGACAAAGTGCAGCAAACTGCAAAGGTGAAGA TGGGAAGTTCATCCAAAGGACAGGGGAGTGAGGCGGCGAAGAGTGGAAAAAAGCGGCGAAGAACTTGA
AA sequence Show only first row Show all	>Potri.006G263300.1 pacid=42769366 polypeptide=Potri.006G263300.1.p locus=Potri.006G263300 ID=Potri.006G263300.1.v4.1 annot-version=v4.1 MASNSSDKELEQQLLEAGNKLLNPPPSVDELLSLLDQVENCLSKVEQSPVKSMQNALSPSQNALVTDQLFRHSNIDVKVAVASCISEITRITAPDAPYDD DRMKEVFQLIVSSFENLDDKSSQSYVKRASILETVAKVRSCVVMLDLECDALIIEMFQHFFKAIRDHHPEDVFSSMETIMSLVLEESEDISVELLSLLLA SVKKGDEEVLPVARRLGEEVLESCAAKVKPYLIQTVKSLGVSLDDYSDIVGSICQEISGSVEQNDVHAGDENKVEESKPVGPSSDAAASQVNEEETTEVA TPEQAEPANDKCPKSAVSNGVAQMEEDDSLADSDSMKKQEDDNKTDQLKSIDLPSTAEPDFSNAERVVVNTESEAEQTSKKSEKSPTKLAEPSESSRVDS EKKAEELPGNKIHSEDVPGSPHKDQPVEEAISSENVKETGSQPPSPKALEGDSVPVASPSVSENLPDESFSKKGGRAKKKESLNKHSAPSSDDVPNKLSD GTSGSEAKLHKCSGKEAPAGTSSEDKTPMRTDASKKESDTTGEPEAKPLKQSSKKVDTLKESDTTNEPEAKARKQSSKKVDASRKESDISGEPEAKLPKQ SSKKAGTLKESDTTNEPEAKARKQSSKKVDASKKESDTSGEPEAKLPKQSSKKMDASKKESNTTDESEAKLLKQSSKKVDGSSNNNNDGSTLKQFEDKKR QSHGKAVSEKHVTKSLMKDDDKEKTHSTKSAAKSAKEEHHLEETPVTSTKRKRAAGDEKAPDIKEFDENVVGSKVKVWWPKDRQFYEGKIVSFDSIKKKH KVLYTDGDEEILILKRQKFELIGDDSESDKEEAADHSSPETSSETRPLKKRMKTNSDKSTKQGKGDDSSKRGSGASSSKSKSAAAKSGGKSKEVSKTGGK SVDDSKVKKSDDHGKNKDHTPKSGSKSDVASETASKSKNDDLVTSKASKSKEDETSTPKPSKSKQETPKTGKSRHDPPKVSSSNTKGKASKSGGKSNVNG AGKLKSSSSKVKEIDDEETSTDSDKVQQTAKVKMGSSSKGQGSEAAKSGKKRRRT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31880			unknown protein		Potri.006G263300 [exp]	0	1
AT5G15540		EMB2773, ATSCC2	EMBRYO DEFECTIVE 2773, ARABIDO...		Potri.017G092600 [exp]	1.00	0.9156
AT1G80070		EMB33, EMB177, ...	ABNORMAL SUSPENSOR 2, EMBRYO D...		Potri.003G031900 [exp]	2.44	0.9080	Pt-EMB177.4
AT3G57300		ATINO80	INO80 ortholog (.1.2)		Potri.016G043500 [exp]	3.87	0.9027	CHR929
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Potri.013G085000 [exp]	4.24	0.9001
AT4G17330		ATG2484-1	G2484-1 protein (.1)		Potri.003G077600 [exp]	4.58	0.9028
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Potri.016G069100 [exp]	5.29	0.9027
AT1G79730		ELF7	EARLY FLOWERING 7, hydroxyprol...		Potri.001G190000 [exp]	6.63	0.8935	PAFA901
AT3G44530		HIRA	homolog of histone chaperone H...		Potri.009G144800 [exp]	7.21	0.8917
AT1G55540		EMB1011	Nuclear pore complex protein (...		Potri.003G223400 [exp]	7.93	0.8976
AT4G17330		ATG2484-1	G2484-1 protein (.1)		Potri.001G157300 [exp]	9.94	0.8946

Compare expression of checked genes

Potri.006G263300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.