Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25150 1019 / 0 TAF5 TBP-associated factor 5 (.1) AT1G11160 125 / 2e-29 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 119 / 3e-29 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 120 / 4e-28 Transducin/WD40 repeat-like superfamily protein (.1) AT2G41500 118 / 7e-28 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT5G23430 119 / 1e-27 Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G49660 114 / 1e-27 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 119 / 2e-27 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G15900 108 / 1e-24 PRL1 pleiotropic regulatory locus 1 (.1) AT5G67320 104 / 3e-23 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G020200 [exp] 1212 / 0 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.005G148500 [exp] 125 / 1e-31 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 124 / 2e-31 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 119 / 4e-28 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.010G255400 [exp] 117 / 4e-27 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 117 / 7e-27 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.008G002300 [exp] 117 / 7e-27 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 110 / 3e-26 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G144400 [exp] 106 / 8e-24 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024447 [exp] 1038 / 0 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10007449 [exp] 994 / 0 AT5G25150 957 / 0.0 TBP-associated factor 5 (.1) Lus10021059 [exp] 132 / 2e-32 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10004167 [exp] 124 / 9e-30 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10011224 [exp] 124 / 5e-29 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10018458 [exp] 124 / 5e-29 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 116 / 2e-28 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 116 / 3e-28 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 114 / 2e-27 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 114 / 2e-27 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0186 [poplar] [flax] PF04494 [poplar] [flax] TFIID_NTD2 WD40 associated region in TFIID subunit, NTD2 domain
Representative CDS sequence Show only first row Show all	>Potri.006G263400.1 pacid=42766964 polypeptide=Potri.006G263400.1.p locus=Potri.006G263400 ID=Potri.006G263400.1.v4.1 annot-version=v4.1 ATGGATGAAGAAGCTGTGGTGAAGTTTGTGGAGACGTATTTGAAGAAGAAAGGGTTCAAGCAAGCAGAGCTTGCTTTCCAAGAAGAAATCCAACAACAAC AGCAAAAACAAAACAACAGCAAAAATGCTATCAATATCCACTCGGATCCTGATCTCTCAACCCTCCTTCACTCCCTCTCTCAACCAGAGGATAGTCCAGC ACGTTACCAAGAGGAATATAGTAAACTAAGAACTTGGGCTTATAGTTCGCTTGATTTGTACAAGCATGAGTTGCTTCGAGTGCTTTATCCAGTGTTTGTC CATTGTTATATGGATATTGTTGCTAAAGGGCATATCCAAGATGCAAGAAATTTTTTCAACAGCTTCCGTGAAGATCATGAAATGATGCACTCACGAGACC TTCAAAAGTTGGAAGGAGTTCTTTCTCCCTCTCATCTGGAGGAGATGGAATTTGCTCATACTCTTAGGCAGAGCAAAGTCAACATTAAGATATGTCAGTA CTCCGATGAGCTCATGATGCAGTATCTTCGGAAGTCAAAATCCACTATAATACTTGGGATTGTCAATGAGCATATTAACTTCCAAGTTTCTCCTGGACAG CCCATCTCAATTTCTGATGATCCTGATGCTGTTACATTAATTGGAAGCAGCCAGGATGCAGCTAATCAGATAAATAAAAAAGAAATACATTGGGGGTTGC TTGAAGATTCTTTAGAAGAACGCTTGGAGAAGACGGGGGGTTTTCTCTCAGATTCTGAAAAGACAGAAGGAGAAACCAAAGAGGGGGACATGGATGAGAA CAAGAAAAGATCAATGGATGGTGGAAAGCAAGGTGCTTCAATAAAAAAGTCAAAAAAGGATAAGGCAGCTAGTGCAACAGCTAAAGCTGTTCGTCTTGAA GCAAATACAGTACCTGCAGCACCACGAGTCAAACCCGAGCTTCCTTTGCCAGTAATGCCAGCTGAAGTGGAACAGTCTATTCTTGAGGACTTGAGAAACC GTGTACAGTTGAGTAGTACGACACTGCCATCTGTTAGCTTTTATACCTTTATCAACACACATAATGGTTTAAACTGTTCTTCAATATCCCATGATGGATC CTTGGTTGCTGGTGGATTCTCAGACTCCTCACTGAAGGTTTGGGACATGGCAAAGCTTGGACAGCAAGCTGGCAATTCTATTTTGCAGGGTGAAAATGAT GCTGCTCCGAGTGAACATGTATTGGGGCCAAACAGTGGCAAAAGATCTTATACTTTGTTTCAGGGTCATTCGGGCCCGGTTCATTCAGCCACTTTTAGCC CCCTTGGGGATTTTATTTTGTCTTCTTCAGCAGATACAACAGTTCGATTATGGAGCACAGAACTCAATGCAAATCTTGTTTGCTACAAAGGCCATAATTA CCCTGTCTGGGATGTCCAGTTCAGTCCCGTGGGACATTATTTTGCCAGTGCTTCGCATGATCGCACAGCAAGGATTTGGTCTATGGATAGGATACAGCCT TTGAGGATAATGGCAGGTCACTTGTCTGATGTTGATTGCGTGCAATGGCATGCCAACTGCAATTACATTGCCACTGGCTCCAGTGACAAAACAGTTCGAC TGTGGGATGTACAGAGTGGGGAGTGTGTCCGCATTTTTATTGGTCATAGGAGTATGATTTTGTCATTGGCCATGTCACCTGATGGTCGATACATGGCATC TGGTGATGAAGATGGCTCTATCATGATGTGGGACCTCTCAAGTGGCCGCTGCATATCGCCTATGATGGGACACCATTCATGTGTATGGTCACTTGCCTTC AGTTGTGAAAGTTCCCTTCTTGCTTCTGGTTCGGCTGATTGTACTGTAAAATTATGGGATGTAACTACAAGTACAAAGCCGGCAAAGACAGAAGAAAGCA AAAGTGGAAATACACACAGATTGAGATTTTTAAAAACTTTGCCAACGAAGTCTACTCCTGTTAGCACTTTGAGGTTTTCGCGTAGGAATCTCCTTTTCGC TGCTGGAGCCCTCTCTAGAAGTCAGTGA
AA sequence Show only first row Show all	>Potri.006G263400.1 pacid=42766964 polypeptide=Potri.006G263400.1.p locus=Potri.006G263400 ID=Potri.006G263400.1.v4.1 annot-version=v4.1 MDEEAVVKFVETYLKKKGFKQAELAFQEEIQQQQQKQNNSKNAINIHSDPDLSTLLHSLSQPEDSPARYQEEYSKLRTWAYSSLDLYKHELLRVLYPVFV HCYMDIVAKGHIQDARNFFNSFREDHEMMHSRDLQKLEGVLSPSHLEEMEFAHTLRQSKVNIKICQYSDELMMQYLRKSKSTIILGIVNEHINFQVSPGQ PISISDDPDAVTLIGSSQDAANQINKKEIHWGLLEDSLEERLEKTGGFLSDSEKTEGETKEGDMDENKKRSMDGGKQGASIKKSKKDKAASATAKAVRLE ANTVPAAPRVKPELPLPVMPAEVEQSILEDLRNRVQLSSTTLPSVSFYTFINTHNGLNCSSISHDGSLVAGGFSDSSLKVWDMAKLGQQAGNSILQGEND AAPSEHVLGPNSGKRSYTLFQGHSGPVHSATFSPLGDFILSSSADTTVRLWSTELNANLVCYKGHNYPVWDVQFSPVGHYFASASHDRTARIWSMDRIQP LRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGSIMMWDLSSGRCISPMMGHHSCVWSLAF SCESSLLASGSADCTVKLWDVTTSTKPAKTEESKSGNTHRLRFLKTLPTKSTPVSTLRFSRRNLLFAAGALSRSQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Potri.006G263400 [exp]	0	1
AT4G27190			NB-ARC domain-containing disea...		Potri.005G042900 [exp]	5.38	0.8201	Pt-RGA-II24.67
AT1G17110		UBP15	ubiquitin-specific protease 15...		Potri.001G378900 [exp]	12.72	0.8031
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Potri.016G075700 [exp]	12.80	0.8035	Pt-SPY.1
					Potri.002G067900 [exp]	13.41	0.7723
AT1G16540		ACI2, ABA3, SIR...	SIRTINOL RESISTANT 3, LOW OSMO...		Potri.007G066400 [exp]	16.27	0.8033	Pt-ABA3.1
AT2G27760		IPPT, ATIPT2	tRNAisopentenyltransferase 2 (...		Potri.009G147600 [exp]	16.43	0.7787
AT1G33390		ATFAS4	FASCIATED STEM 4, RNA helicase...		Potri.002G201400 [exp]	17.43	0.7892
AT2G39580			unknown protein		Potri.010G208200 [exp]	18.46	0.7827
AT5G22450			unknown protein		Potri.004G203500 [exp]	18.89	0.8008
AT2G17900		ASHR1, SDG37	ASH1-related 1, SET domain gro...		Potri.005G173100 [exp]	20.71	0.7588	SDG944,SDG37.1

Compare expression of checked genes

Potri.006G263400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.