Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CIPK25.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25110 569 / 0 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) AT5G10930 565 / 0 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) AT2G25090 476 / 2e-166 CIPK16, SnRK3.18 SNF1-RELATED PROTEIN KINASE 3.18, CBL-interacting protein kinase 16 (.1) AT5G45820 434 / 6e-150 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT4G18700 413 / 5e-141 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) AT5G58380 412 / 5e-141 PKS2, CIPK10, SnRK3.8, SIP1 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) AT1G30270 405 / 3e-138 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT4G30960 400 / 1e-136 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT5G45810 401 / 2e-136 CIPK19, SnRK3.5 SNF1-RELATED PROTEIN KINASE 3.5, CBL-interacting protein kinase 19 (.1) AT5G07070 398 / 9e-136 CIPK2, SnRK3.2 SNF1-RELATED PROTEIN KINASE 3.2, CBL-interacting protein kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G019900 [exp] 742 / 0 AT5G10930 576 / 0.0 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) Potri.003G181900 [exp] 527 / 0 AT5G25110 460 / 2e-159 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Potri.016G133500 [exp] 444 / 9e-154 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.006G186200 [exp] 440 / 2e-152 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.019G048800 [exp] 439 / 4e-152 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.018G108500 [exp] 426 / 4e-147 AT4G30960 639 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.011G067500 [exp] 424 / 7e-146 AT5G45820 647 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Potri.019G127500 [exp] 423 / 1e-145 AT5G58380 641 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.013G156000 [exp] 415 / 2e-142 AT5G58380 623 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024448 [exp] 610 / 0 AT5G25110 654 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Lus10007448 [exp] 601 / 0 AT5G25110 650 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Lus10024075 [exp] 476 / 4e-166 AT5G10930 572 / 0.0 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) Lus10022749 [exp] 442 / 3e-153 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10014163 [exp] 438 / 2e-151 AT5G58380 592 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10021852 [exp] 430 / 1e-148 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10036280 [exp] 426 / 5e-147 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10042229 [exp] 411 / 7e-141 AT5G58380 676 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10028115 [exp] 410 / 2e-140 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10042816 [exp] 408 / 1e-139 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0573 [poplar] [flax] KA1-like PF03822 [poplar] [flax] NAF NAF domain
Representative CDS sequence Show only first row Show all	>Potri.006G263500.1 pacid=42767257 polypeptide=Potri.006G263500.1.p locus=Potri.006G263500 ID=Potri.006G263500.1.v4.1 annot-version=v4.1 ATGGAGGAGAGGCATGTTATTTTTGGGAAGTATGAAATGGGTAGGCTTTTAGGGAAGGGAACTTTTGCTAAAGTTTACTATGGGAAACACTTGGTGACAG GAGAGAGTGTGGCAATCAAAGTCATAAGCAAAGATCAAGTCAAGAAAGAAGGGATGATGGAGCAAATCCAGAGAGAAATCTCAGTCATGCGTCTTGTTCG TCATCCCAACATTGTAGAGCTCAAGGAAGTCATGGCTACCAAGACAAAAATCTTCTTCATCATGGAGTATGTTCGAGGAGGAGAGTTGTTTGCCAAAGTA GCCAAAGGAAGGCTGAAAGAAGAAGCTGCTCGAAAATATTTCCAGCAACTAATCAGCGCAATTGATTATTGTCATAGCAGAGGTGTTTATCATAGAGATT TGAAGCCAGAGAATTTGTTGCTTGATGAAGATGAGAACTTGAAAATCTCTGATTTTGGCTTGTCAGCCTTGCCTGAACAATTTCGGCAAGATGGGCTTTT GCATACTCAGTGTGGAACTCCTGCTTATGTTGCCCCAGAAGTCTTGAGAAAGAAAGGCTATGATGGATCAAAAGCTGATATATGGTCATGTGGGGTGATT CTTTATGTGCTTCTTGCAGGATTCTTGCCATTTCAAGATGAGAATGTTATGAAGATGTACAGGAAAGTTTTCAAGGCTGAATATCAGTTTCCGCCTTGGT TTTCAACAGATTCTAAGAGGTTGATTTCAAGACTTCTTGTTGCTGATCCTGAAAAGAGAATCACAATTCCTGCCATAATGAGAAATCATTGGTTTCTTAA AGGGTTTTCAAGACCAGTGGCCTTTTCTATCCAAGAATCAAGCATGGATCAAACAGGACAAGAACAAGATCTTGATTCTTGTTCTGTTGTCAACACCAAG GTATCATCACCAGAATTCTTCAATGCATTCGAGTTTATTTCCTCAATGTCATCCGGCTTTGATCTGTCTAGTCTTTTTGAGACTAAGAGGAAATCAGGCT CTATGTTCACTTCAAAATTTTCAGCGAGTGCTATCATGGAAAAAATTGAAGGGGTTGCAAAAGGGCTGAGTTATAAGGTGGCAAAAGTCAAAGATTTCAA AGTGACGTTACAAGGTCCATGCGAGGGTAGAAAGGGGAAGCTGGCAGTGACGGCGGAGGTGTTCGAGGTGGCACCGGAGGTTGCGGTGGTGGAGTTCTCC AAGTCTTCCGGAGATACCTTGGAGTATACTAAGTTCTGTGAGGAAGATGTTAGGCCTGCACTAAAAGACATCGTTTGGACATGGCAAGGAGACAATGTTT GTAATAAAGATAACAACAATAGTCATGTAGAAGATCGTGAAATTCAAATGTTGTAG
AA sequence Show only first row Show all	>Potri.006G263500.1 pacid=42767257 polypeptide=Potri.006G263500.1.p locus=Potri.006G263500 ID=Potri.006G263500.1.v4.1 annot-version=v4.1 MEERHVIFGKYEMGRLLGKGTFAKVYYGKHLVTGESVAIKVISKDQVKKEGMMEQIQREISVMRLVRHPNIVELKEVMATKTKIFFIMEYVRGGELFAKV AKGRLKEEAARKYFQQLISAIDYCHSRGVYHRDLKPENLLLDEDENLKISDFGLSALPEQFRQDGLLHTQCGTPAYVAPEVLRKKGYDGSKADIWSCGVI LYVLLAGFLPFQDENVMKMYRKVFKAEYQFPPWFSTDSKRLISRLLVADPEKRITIPAIMRNHWFLKGFSRPVAFSIQESSMDQTGQEQDLDSCSVVNTK VSSPEFFNAFEFISSMSSGFDLSSLFETKRKSGSMFTSKFSASAIMEKIEGVAKGLSYKVAKVKDFKVTLQGPCEGRKGKLAVTAEVFEVAPEVAVVEFS KSSGDTLEYTKFCEEDVRPALKDIVWTWQGDNVCNKDNNNSHVEDREIQML

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25110		CIPK25, SnRK3.2...	SNF1-RELATED PROTEIN KINASE 3....		Potri.006G263500 [exp]	0	1	CIPK25.1
AT3G54360			zinc ion binding (.1)		Potri.001G036400 [exp]	1.41	0.8854
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Potri.016G129900 [exp]	2.00	0.8153	ASNAP.2
AT2G39890		ATPROT1, ProT1	proline transporter 1 (.1.2)		Potri.010G194600 [exp]	6.63	0.7866	PtrProT2
AT5G20910		AIP2	ABI3-interacting protein 2, RI...		Potri.006G217600 [exp]	9.16	0.7850
AT1G05790			lipase class 3 family protein ...		Potri.002G231450 [exp]	9.43	0.6843
AT4G16144		AMSH3	associated molecule with the S...		Potri.010G141100 [exp]	9.64	0.7466
AT1G04770			Tetratricopeptide repeat (TPR)...		Potri.003G177600 [exp]	13.71	0.6807
AT2G47500			P-loop nucleoside triphosphate...		Potri.005G021100 [exp]	14.49	0.8155
					Potri.004G034301 [exp]	15.00	0.7232
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.011G132700 [exp]	16.97	0.7539

Compare expression of checked genes

Potri.006G263500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.