Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25050 627 / 0 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) AT5G58160 592 / 0 actin binding (.1) AT3G32400 519 / 4e-171 Actin-binding FH2/DRF autoregulatory protein (.1) AT5G07740 518 / 5e-158 actin binding (.1) AT1G31810 490 / 4e-151 AFH14 Formin Homology 14 (.1) AT5G07770 395 / 3e-121 Actin-binding FH2 protein (.1.2) AT5G07650 366 / 1e-109 Actin-binding FH2 protein (.1) AT5G07780 354 / 2e-109 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G07760 344 / 2e-101 formin homology 2 domain-containing protein / FH2 domain-containing protein (.1) AT1G42980 187 / 9e-53 Actin-binding FH2 (formin homology 2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G019600 [exp] 1149 / 0 AT2G25050 636 / 0.0 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) Potri.006G185501 [exp] 627 / 0 AT5G58160 598 / 0.0 actin binding (.1) Potri.018G108000 [exp] 625 / 0 AT5G58160 600 / 0.0 actin binding (.1) Potri.006G185601 [exp] 572 / 0 AT5G58160 603 / 0.0 actin binding (.1) Potri.015G061001 [exp] 549 / 6e-171 AT5G07740 722 / 0.0 actin binding (.1) Potri.012G067900 [exp] 541 / 2e-168 AT5G07740 727 / 0.0 actin binding (.1) Potri.003G103800 [exp] 522 / 6e-162 AT1G31810 718 / 0.0 Formin Homology 14 (.1) Potri.002G240232 [exp] 114 / 3e-25 AT3G25500 610 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.007G054900 [exp] 114 / 3e-25 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036612 [exp] 622 / 0 AT5G58160 608 / 0.0 actin binding (.1) Lus10035830 [exp] 622 / 0 AT5G58160 619 / 0.0 actin binding (.1) Lus10007447 [exp] 580 / 0 AT5G58160 604 / 0.0 actin binding (.1) Lus10024450 [exp] 566 / 1e-179 AT5G58160 600 / 0.0 actin binding (.1) Lus10015724 [exp] 521 / 5e-163 AT5G07740 723 / 0.0 actin binding (.1) Lus10003482 [exp] 514 / 1e-158 AT5G07740 714 / 0.0 actin binding (.1) Lus10003956 [exp] 491 / 8e-151 AT1G31810 731 / 0.0 Formin Homology 14 (.1) Lus10023804 [exp] 491 / 2e-150 AT1G31810 615 / 0.0 Formin Homology 14 (.1) Lus10017556 [exp] 300 / 2e-91 AT5G07740 392 / 1e-124 actin binding (.1) Lus10015725 [exp] 203 / 1e-59 AT5G07740 282 / 6e-88 actin binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02181 [poplar] [flax] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Potri.006G263700.1 pacid=42768054 polypeptide=Potri.006G263700.1.p locus=Potri.006G263700 ID=Potri.006G263700.1.v4.1 annot-version=v4.1 ATGGCTTTGTTTAGGAAGTTCTTCTTTAGAAAACCACCTGATGGGCTTTTGGAGATCTCTGAAAGGGTTTACGTCTTTGATTGCTGCTATTGTACGGACA CTTTTGAAGATGAAGAATATAAAGTGTACATTGGAGGCATAGTGGGTAAACTTCATAACCATTTGCCTGATGCTTCATTTATGGTGTTTAATTTCCGAGA AGGCGATAACCAAAGCCAGATTTCTAGCGTATTGTCCGAATTTGACATGACTGTGATGGACTATCCCCGACACTATGAAAGTTGCCCCATACTCTCAATG GAGATGATTCATCACTTCTTACGGTCGAGTGAAAGCTGGCTGTCACTTGGGCAACAAAATGTGGTCTTGATGCATTGCGAACGAGGTGGGTGGCCAGTTC TGGCATTCATGCTTGCTGCCTTATTGCTATATGGGAAGCAGTTCACTGGTGAGCAGAGAACTCTAGACATGATTTATAAGCAAGGGCCTCGAGAGCTTTT ACAGCTGATGTCCCCTATTAATCCATTACCTTCGCAATTGAGGTACTTACAGTATGTATCAAGGAGGAACGTGGGAACACAATGGCCTCCTCTGGATAGA GCACTTACATTGGATTGCATTATTCTTAGATTAGTTCCTGGTATGGATACAGAGGGGGGTTGCAGGCCGATATTTAGGATATATGGACAAGACCCTTTTA TGGCTGCAGATAGGAATCCTAAAGTTCTGTTCTCAACACCAAAAAGGAGCAGATTCGTCCGGCATTTCAAGCAGGCAGAATGTGAATTGGTTAAAATAGA CATCCATTGTCATATACAAGGTGATATTGTCATGGAGTGTATTTCCTTGGACAGTGATCATGAAAGGGAACAGATGATGTTTCGGGTCATGTTCAACACA GCCTTTATAAGATCAAATATCTTGATGTTTAATCGTGATGAAATTGACACGTTATGGAATGCAAAGGATCAATTTCCCAAGGACTTCAGAGCAGAGGTTC TTTTCTCAGAGATGGATTCTGCTACTTCAATTGCTGCAATTGATTTGCCTGGTTTAGAAGAGAAAGATGGCCTACCTATGGAAGCGTTTGCAAGAGTGCA TGAGATTTTCAGCAACGTGGACTGGCCAGATACAAAAACTGATGTAGCACAAAATGTGCACCAGCATATCATAGCACCCCAAGAAAATTTGGACAGTTCT CCCCAGAGGGCAGAAATAGGCAGTGTATTGATGGAATCAACCCTTGTTAAAGTTCAAGAGAAATTGAAACTAAAAGAATCAGAAAACAAGACTCCAAGTC CCACTTCCATTACCCCGATGAAACAATCTATCCTCTCTTTTGAACCATTTTCAGATACAAATTCAGTAAGAGAGGAGGCTGAACCTCAAGAACTAAAGGT TGCCCTCCACTCTGTGCCCTCTATAAAATCATCTCCTGATGAAAATTCAGCTGGGGAGAAGGTAGAACACCAAGAACTGAAGGTTGCCCTCCAATTTACG CCCTCTATTAAGCCATCTTCAGATGAAAATTCAACTCAAAAGAAGGTTGAACCACAAGAGCTCCAGGTTGCTCTCCAACTGTCAGCTCAATCTAAGCTCA TATCACAGCGAGTACCTCAGAGATCGCACTCTTCTCCAGTTTCCTATAGCAATTCCTTGCAGGCCTCACCTGTGCCTATGTCAAGATACCATGGTGCACC CTCTAACCTTGGCATCACAGCTTTGTTGTATGATCATGCTGCATCTAAAGGCGAAGAAGTCGTTTGTCCAGTGACATTATCTCTACCTTCCTCTGCTATA TCATCTCCAGTCACAGGTGTACTTAAAATTGCACCACTCAGTAATGTGTCTTCTCTGAGGACACCACCACTTCCTACGCCATTGCAATCTTCAATTGGAG CTCCTAAAACTACCGAAAAGCCTTCTCCAACATGTCCTATTCCTCCTACTCCTCAACCCATTTCAATTTCTTCTTCCGTCACAGAATTATCCAAACCTGC ACAACTCAATCAGGTGTCTACTCCGGGGACACCACCATGCCCTCCTAACTCATTGCAATCATCAATTGAAACACCTCAAACTATCAAAAATTCTTTTGTT TCTTGTTCTATTCCTGCTCAATCTTTTTCCAAAGAAACAGATTCTTTACTCAGTCAACATCCTCAGGCAACATCTGGCAGTATTTACTCACCGTTGGTTC CTTCTCCTCTTCACTCTTCTCTTTCTGCCTCTTCGTCTCCTGTTATCAAGAGTTCATCTTCAGCTCCCCCAGCCCCTCCTCCACCCCCTTCTTTTTTAGG AGCACTTCCATCTTCTGCTGACAGGAACTCGTATCCAGCTCCCCCTCCTCTACCCCCGGGAATGGCCTCTATGGTTGCTAGCTCAGTTACTTCGCAGTCT GTGAAGAACTTGGCTGTTGTGCCCAGACCACCACCACCACCTTCTCCTCCCCTACTTGCTGGATCTGCTTTGGGCCCCACTAGTGCTCCTTCAGTGCCGC CGCCGCCACCACCTCCTCCTCTACATTCTGGATCTGCCTTGGGCCCCAGTACTGCTCCTTCAGTGCCACCACCACCACCTCCTCTGCATTCTGGATCTGC CTTGGGTCTCACTAGTGCTCCTTCAGTGCCACCACCACCACCTCCTCCTCATAGCTCTGCTGTTTCTTCATATAACAATGTCGCGCATATTCCTCCCGTG CCACCTCCTCCTGCTCCTTTGGCCAACGGGTTGTCAAGAGCTAGCAGTGTCTCCTCACTATCACATGCTGGAGTTAGTAATGGAAATGTACCTTCAGTTC CTGGACCACCTTCTGGTGCTCCATTTAGTGCAAAGGGGCGGGGCATGTTTCGTATAAATTCAAAAAATCAACCCAGAAAAGCCAACCTGAAACCTTATCA CTGGTTAAAATTAACTAGGGCCGTGTCAGGCAGTTTATGGGCTGAGGCGCAAAAAGCTGATGAAGCTTCCAAGGCTCCAGAGTTTGACATGTCAGAACTT GAGACTCTTTTCTCAGCAGCTGCTCCAAATTCTGATCGTGGGAGCACAGCAGGGAAATCAAATCGGCGCACCGTGGGACATAAATCTGATAAAATCCAGC TGATTGAACTTAGACGGGCATATAATTGTGAAATCATGCTTTCAAAGGTTAAAATTCCTCTGCCAGATCTGATGAGTTCGGTTCTTGCTTTGGATGATAC AGCATTGGATGTTGATCAGGTTGATAACCTTATTAAGTTTTGTCCAACAAAAGAAGAGATGGAATTACTCAAGGGTTATAATGGAGATAAAGAGAACTTG GGAAAATGTGAAAAGTTTTTCTTAGAAATGATGAAAGTGCCACGTGCAGAGTCAAAGCTAAGAGTTTTTTCGTTTAAGATACAATTCCAATCCCAGGTTT CTGATCTCAGAGGTAATTTGAATATTGTAAATTCGGCTTCTGAAGAGATCAGGAGCTCAGCAAAGTTGAAAAGGATCATGCAAACAATTCTTTCTCTTGG TAATGCTCTCAACTTTGGTACTGCAAGGGGTTCTGCAGTTGGATTTCGAATGGATAGTCTCCTCAAACTCACTGATACACGAGCTCGAAACAACAAGATG ACTCTCATGCATTATCTTTGTAAGGTACTTGCTGAAAAGCTCGCAGAACTGCTAGATTTTCCAAAGGATCTTGTGAGTTTGGAGGCTGCAACAAAAATAC AATTGAAATATTTGGCAGAGGAAATGCAAGCCGTTAGTAAAGGACTTGAGAAAGTTATGCAGGAATTGAGTGCTGCCGAGAATGATGGTTTGGTCTCAGA AATTTTTTGCAAGATTCTTAAGGAATTCCTTGCTTTTGCTGAAAGTGAAGTGAGGTCTTTGGCTTGCCTTTATTCCTGCGTGGGTAGAAATGCGGATGCA CTGGCTCTTTATTTTGGAGAAGATCCGGCACGTTGCACATTTGAGCAAGTTGTGTCCACTCTGCTCAATTTTGTGAGGATGTTTGTCCGAGCACATGACG AAAACCAAAAACAACTTGAATTGGAAAAGAAAAAAGCAGAAAAGGAGGCACAGATTGAAAAGCCCAAGATTGCTTCTCCCAGAAAACTGTCTGAAAACTT GGTACAGACACCCATCAAAAGTGGGAGCATCCAATGA
AA sequence Show only first row Show all	>Potri.006G263700.1 pacid=42768054 polypeptide=Potri.006G263700.1.p locus=Potri.006G263700 ID=Potri.006G263700.1.v4.1 annot-version=v4.1 MALFRKFFFRKPPDGLLEISERVYVFDCCYCTDTFEDEEYKVYIGGIVGKLHNHLPDASFMVFNFREGDNQSQISSVLSEFDMTVMDYPRHYESCPILSM EMIHHFLRSSESWLSLGQQNVVLMHCERGGWPVLAFMLAALLLYGKQFTGEQRTLDMIYKQGPRELLQLMSPINPLPSQLRYLQYVSRRNVGTQWPPLDR ALTLDCIILRLVPGMDTEGGCRPIFRIYGQDPFMAADRNPKVLFSTPKRSRFVRHFKQAECELVKIDIHCHIQGDIVMECISLDSDHEREQMMFRVMFNT AFIRSNILMFNRDEIDTLWNAKDQFPKDFRAEVLFSEMDSATSIAAIDLPGLEEKDGLPMEAFARVHEIFSNVDWPDTKTDVAQNVHQHIIAPQENLDSS PQRAEIGSVLMESTLVKVQEKLKLKESENKTPSPTSITPMKQSILSFEPFSDTNSVREEAEPQELKVALHSVPSIKSSPDENSAGEKVEHQELKVALQFT PSIKPSSDENSTQKKVEPQELQVALQLSAQSKLISQRVPQRSHSSPVSYSNSLQASPVPMSRYHGAPSNLGITALLYDHAASKGEEVVCPVTLSLPSSAI SSPVTGVLKIAPLSNVSSLRTPPLPTPLQSSIGAPKTTEKPSPTCPIPPTPQPISISSSVTELSKPAQLNQVSTPGTPPCPPNSLQSSIETPQTIKNSFV SCSIPAQSFSKETDSLLSQHPQATSGSIYSPLVPSPLHSSLSASSSPVIKSSSSAPPAPPPPPSFLGALPSSADRNSYPAPPPLPPGMASMVASSVTSQS VKNLAVVPRPPPPPSPPLLAGSALGPTSAPSVPPPPPPPPLHSGSALGPSTAPSVPPPPPPLHSGSALGLTSAPSVPPPPPPPHSSAVSSYNNVAHIPPV PPPPAPLANGLSRASSVSSLSHAGVSNGNVPSVPGPPSGAPFSAKGRGMFRINSKNQPRKANLKPYHWLKLTRAVSGSLWAEAQKADEASKAPEFDMSEL ETLFSAAAPNSDRGSTAGKSNRRTVGHKSDKIQLIELRRAYNCEIMLSKVKIPLPDLMSSVLALDDTALDVDQVDNLIKFCPTKEEMELLKGYNGDKENL GKCEKFFLEMMKVPRAESKLRVFSFKIQFQSQVSDLRGNLNIVNSASEEIRSSAKLKRIMQTILSLGNALNFGTARGSAVGFRMDSLLKLTDTRARNNKM TLMHYLCKVLAEKLAELLDFPKDLVSLEAATKIQLKYLAEEMQAVSKGLEKVMQELSAAENDGLVSEIFCKILKEFLAFAESEVRSLACLYSCVGRNADA LALYFGEDPARCTFEQVVSTLLNFVRMFVRAHDENQKQLELEKKKAEKEAQIEKPKIASPRKLSENLVQTPIKSGSIQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25050			Actin-binding FH2 (Formin Homo...		Potri.006G263700 [exp]	0	1
AT3G22380		TIC	time for coffee (.1.2)		Potri.010G089700 [exp]	1.00	0.9186
AT5G15920		EMB2782, SMC5	EMBRYO DEFECTIVE 2782, structu...		Potri.001G262600 [exp]	3.00	0.9053
AT1G15780			unknown protein		Potri.001G204900 [exp]	3.74	0.9088
					Potri.008G043250 [exp]	4.47	0.8935
AT1G45160			Protein kinase superfamily pro...		Potri.002G263000 [exp]	5.00	0.8914
AT5G07400	FHA		forkhead-associated domain-con...		Potri.012G111800 [exp]	5.47	0.8819
AT2G45460	FHA		SMAD/FHA domain-containing pro...		Potri.014G071400 [exp]	8.36	0.8813
AT1G08840		EMB2411	embryo defective 2411, DNA rep...		Potri.014G180200 [exp]	9.21	0.8584
AT4G27190			NB-ARC domain-containing disea...		Potri.018G145532 [exp]	12.64	0.8546
AT1G15780			unknown protein		Potri.003G012400 [exp]	13.56	0.8809

Compare expression of checked genes

Potri.006G263700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.