Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31805 94 / 2e-21 WRKY family transcription factor (.1) AT5G10890 69 / 6e-13 myosin heavy chain-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G019400 [exp] 325 / 1e-109 AT4G31805 84 / 8e-18 WRKY family transcription factor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007445 [exp] 55 / 3e-08 AT4G31805 116 / 3e-29 WRKY family transcription factor (.1) Lus10024451 [exp] 53 / 2e-07 AT4G31805 121 / 5e-31 WRKY family transcription factor (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G263800.1 pacid=42770158 polypeptide=Potri.006G263800.1.p locus=Potri.006G263800 ID=Potri.006G263800.1.v4.1 annot-version=v4.1 ATGATGGAAGAAGGGTTGGGCTGTAGAGAGCGGCGCAAGTTTGCACACTGTTACCTTTCTCGCATTGCTCGGTGGCTCTCTGATTTGAGGCGGAAGAGAA AGAAAGAGAGTAAAAGGAATGGATTGGCTGGTGATCGGATTGTGCAGGTTAACAGTTCGACGAATGGATTCAACGGCGAGGCTTCCTTGAATTCGGCTTC CCAGACTGCCAATCCAGGACAGTGTAACAGGGAGGCTACTGTCAACCTTGGAGTTGGATGTTGTCTATTGTATCAAATTGCAAAGAGTAAAAATGAACTT GATAAGATAATGAAAACGCGAATGCAAATGGAGAAGCTTCTTGAAGATGTGAGGGAGGAATTGCAAAAGAAAGACGGGCTCTCTAAGCCATCTGAGATGA ATGAAATGTGTGCTTATTCCACCACAGGGTCATCAACAATTACAGTTTGTGGCCAGTCTTTGAGATATGAGACACCTAAGAAAGGAGAGTGTTCAGAAGG AAGGGATAAACTTGAGGCGGAACTTGAAGTTGAGCTTCAGAGTTTGCAACTTCACTTGGATACAGTCGAGAATTCGGTGAAACATCCACAACAGAAAGGG AGAAGTGTCACCAATGACAACACAGCTACTTCAAAAAGCCAGATTGTAAGTTCTGGAAATTTGAAATGGAAGGTCACCGATGTGAACACTGCTACTTCAA AAAGCCAGACTGTTAGTTCTGGAGAAGTAGTTGCTTTCAAATTTGAAAAAGCAGCAGGTTCTGAAGAGCATTGTGGTGTTTCGCCTCATGAATTGGAGAG AAGGTTGCACGAATTACTGGAATCAAGACAGCAAGAACAGATAAGAGAGCTAGAAGGTATGATAGAATGTGCTAGGCACAAGCTTCGGGAGAAAGAAATG GAAGTTTCTTGGTGGAAAGACACTGCCTGTCTTATTTCTTGTCACCTTCCAGAATCCTCGAAACTCAATTCACGTCACTGTGCAAAACTTCTTAGTCCTT AA
AA sequence Show only first row Show all	>Potri.006G263800.1 pacid=42770158 polypeptide=Potri.006G263800.1.p locus=Potri.006G263800 ID=Potri.006G263800.1.v4.1 annot-version=v4.1 MMEEGLGCRERRKFAHCYLSRIARWLSDLRRKRKKESKRNGLAGDRIVQVNSSTNGFNGEASLNSASQTANPGQCNREATVNLGVGCCLLYQIAKSKNEL DKIMKTRMQMEKLLEDVREELQKKDGLSKPSEMNEMCAYSTTGSSTITVCGQSLRYETPKKGECSEGRDKLEAELEVELQSLQLHLDTVENSVKHPQQKG RSVTNDNTATSKSQIVSSGNLKWKVTDVNTATSKSQTVSSGEVVAFKFEKAAGSEEHCGVSPHELERRLHELLESRQQEQIRELEGMIECARHKLREKEM EVSWWKDTACLISCHLPESSKLNSRHCAKLLSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31805			WRKY family transcription fact...		Potri.006G263800 [exp]	0	1
AT1G04270		RPS15	cytosolic ribosomal protein S1...		Potri.005G055534 [exp]	2.00	0.8351
AT3G30460			RING/U-box superfamily protein...		Potri.013G116000 [exp]	4.89	0.7043
AT2G15530			RING/U-box superfamily protein...		Potri.005G055667 [exp]	7.93	0.7696
AT5G63920		TOP3A, AtTOP3al...	topoisomerase 3alpha (.1)		Potri.005G067100 [exp]	8.12	0.7053
AT4G16060			unknown protein		Potri.010G006000 [exp]	11.13	0.7225
					Potri.015G059501 [exp]	15.00	0.6414
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.009G027400 [exp]	23.81	0.7203
AT3G58610			ketol-acid reductoisomerase (....		Potri.004G043700 [exp]	26.07	0.7112	Pt-PGAAIR.3
AT5G07950			unknown protein		Potri.018G051500 [exp]	33.67	0.6878
AT4G33990		EMB2758	embryo defective 2758, Tetratr...		Potri.012G111900 [exp]	33.98	0.6787

Compare expression of checked genes

Potri.006G263800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.