Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30935 171 / 1e-47 WRKY ATWRKY32, WRKY32 WRKY DNA-binding protein 32 (.1) AT2G03340 162 / 4e-44 WRKY WRKY3 WRKY DNA-binding protein 3 (.1) AT1G13960 160 / 2e-43 WRKY WRKY4 WRKY DNA-binding protein 4 (.1.2) AT4G26440 155 / 3e-41 WRKY ATWRKY34, MSP3, WRKY34 MICROSPORE-SPECIFIC PROMOTER 3, WRKY DNA-binding protein 34 (.1) AT2G04880 149 / 1e-39 WRKY ATWRKY1, ZAP1 zinc-dependent activator protein-1 (.1.2) AT4G26640 149 / 2e-39 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2) AT2G38470 144 / 2e-37 WRKY ATWRKY33, WRKY33 WRKY DNA-binding protein 33 (.1) AT5G07100 98 / 2e-23 WRKY WRKY26 WRKY DNA-binding protein 26 (.1.2) AT4G12020 100 / 5e-22 WRKY MEKK4, MAPKKK11, ATWRKY19, WRKY19 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3) AT5G56270 97 / 3e-21 WRKY ATWRKY2, WRKY2, WRKY23 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G107000 [exp] 188 / 1e-53 AT4G30935 373 / 1e-124 WRKY DNA-binding protein 32 (.1) Potri.006G184800 [exp] 175 / 8e-49 AT4G30935 347 / 2e-114 WRKY DNA-binding protein 32 (.1) Potri.004G120800 [exp] 167 / 7e-46 AT2G03340 358 / 5e-118 WRKY DNA-binding protein 3 (.1) Potri.010G163000 [exp] 163 / 2e-44 AT1G13960 431 / 5e-147 WRKY DNA-binding protein 4 (.1.2) Potri.016G128300 [exp] 163 / 4e-44 AT2G38470 377 / 8e-125 WRKY DNA-binding protein 33 (.1) Potri.011G169300 [exp] 159 / 4e-42 AT5G56270 588 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.013G153400 [exp] 155 / 5e-41 AT2G38470 329 / 5e-106 WRKY DNA-binding protein 33 (.1) Potri.001G472800 [exp] 155 / 1e-40 AT5G56270 585 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.008G091900 [exp] 152 / 2e-40 AT2G03340 407 / 7e-138 WRKY DNA-binding protein 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022150 [exp] 179 / 5e-50 AT4G30935 374 / 9e-125 WRKY DNA-binding protein 32 (.1) Lus10036268 [exp] 179 / 5e-50 AT4G30935 364 / 4e-121 WRKY DNA-binding protein 32 (.1) Lus10037131 [exp] 170 / 1e-47 AT2G03340 414 / 1e-141 WRKY DNA-binding protein 3 (.1) Lus10036800 [exp] 170 / 2e-47 AT2G03340 405 / 4e-138 WRKY DNA-binding protein 3 (.1) Lus10000173 [exp] 165 / 9e-47 AT2G03340 366 / 2e-124 WRKY DNA-binding protein 3 (.1) Lus10012322 [exp] 164 / 2e-45 AT2G04880 278 / 2e-89 zinc-dependent activator protein-1 (.1.2) Lus10026634 [exp] 159 / 1e-43 AT1G13960 409 / 1e-139 WRKY DNA-binding protein 4 (.1.2) Lus10030424 [exp] 158 / 4e-43 AT1G13960 421 / 7e-144 WRKY DNA-binding protein 4 (.1.2) Lus10006368 [exp] 156 / 6e-42 AT2G04880 283 / 5e-90 zinc-dependent activator protein-1 (.1.2) Lus10015377 [exp] 150 / 2e-39 AT2G03340 417 / 3e-141 WRKY DNA-binding protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G264000.1 pacid=42770714 polypeptide=Potri.006G264000.1.p locus=Potri.006G264000 ID=Potri.006G264000.1.v4.1 annot-version=v4.1 ATGCAAGAACAGAGAAAATACCATAGGGGAGATTCGGATATTGGATTTAAAAACTATGATTGTTCTTCTTTTTCCCAATTACTCAAAAAAGTCATGACTT CCTCCAATTCATCAGGGTTTCAGGGGGAAAATGAGATGTTCCAACGGGACGCTCAGGTGGGTACAAAACCTGAAGCAGACTGGGTCAGGTTAGAACACCA GGTTGAATGTGCAAATACTTCTAGTGAAGCATTGTCTGTTATACCAGCTGCAATATCTGTCCCACATTCAGCATCTGTAACTCAAAAGCCAATGTCGAAG TGTGAACTTGGACTAGTAATAGACCAGCAAAATTCTCACCATGAAACTGGTCTTCCACGTGTTGTTATGGATGCACCCTTTGCGGATGGCTATAACTGGA GGAAGTATGGCCAGAAGCCAGTGAAGGGTTCTAAAAATTCAAGAAGCTACTATAGATGTGTCCATTGTAGTTGCTATGCAAAGAAGAAGGTTCAACATTG TTGTCAATCTGGTCGTGTTGTTGATGTTGTTTACATAGGTGACCATAATCATGACCCCCCTCATAGAAAATGCATCAGGGTTATATCATCTGCTAAGCCA ACTGTAGGCAGTCAAATTGTAGACCCTTCAGTTCAAAAGCTAGATGGGTCGGATATTTCTGTCTGTTCAGCAGATGGCAGGCGTTCATCTCTGCATGTGC CTGAATCAGAACAACAGAGTTCAAGCAGTTCTAATGGAAATGTGGGGGCTAAGATTGAAGAGAAAAATGGTGATGAGCCAGAGTCAAAACGATGCTTTGG TCCCAGGGCAGTGGAACCCCAACAAAATGGCCCCTGTGGGATTGCAGGTACCGAGGTTCAGGAGAAGCATGGTGCTGAACCAAGGCTGAAAATAAGGATT AAAGAAAGAAGTGCGGCACATTCAGTTCCTGTCTTGAAAAAGGAGCCTGAAATCGCTGTACACACTGTTCCTGATGAGGGGAGCTCAAATGATGGCTATC GATGGCGCAAGTATGGTCAGAAAATGTTGAAAGGGAATTCATTCATAAGGAGCTATTACAGATGCACATCGTCAGCATGTCCTGCTCGTAAGCATGTTGA GAGGGCTGCAGATGAGGCGACATCCACCACTATAACATACGAAGGGAAACATGACCATGGTATGCCAGCACCTAAGAAAAGACATGAACATGATATTCCA GTACCTAAGAAAAGACATGGTTCAGAAAGTTGTCTGATTTCCCCGGCTGCTTCCGCAGACAATGCCTGCTGCAAGAAAAACAGAAGCTTATCTAGTCGAA GGCCTTCAAGCAAGTGCTCGATGGACAGTGAAGTAGATATAATGGGTGAGAAGATCTTGGAGCTTGGAGGTGAGGAGGCATTAGAATCAGCCCAAACTCT TCTCAGCATTGGTGTTGAACTCAAGCCTTGCTGA
AA sequence Show only first row Show all	>Potri.006G264000.1 pacid=42770714 polypeptide=Potri.006G264000.1.p locus=Potri.006G264000 ID=Potri.006G264000.1.v4.1 annot-version=v4.1 MQEQRKYHRGDSDIGFKNYDCSSFSQLLKKVMTSSNSSGFQGENEMFQRDAQVGTKPEADWVRLEHQVECANTSSEALSVIPAAISVPHSASVTQKPMSK CELGLVIDQQNSHHETGLPRVVMDAPFADGYNWRKYGQKPVKGSKNSRSYYRCVHCSCYAKKKVQHCCQSGRVVDVVYIGDHNHDPPHRKCIRVISSAKP TVGSQIVDPSVQKLDGSDISVCSADGRRSSLHVPESEQQSSSSSNGNVGAKIEEKNGDEPESKRCFGPRAVEPQQNGPCGIAGTEVQEKHGAEPRLKIRI KERSAAHSVPVLKKEPEIAVHTVPDEGSSNDGYRWRKYGQKMLKGNSFIRSYYRCTSSACPARKHVERAADEATSTTITYEGKHDHGMPAPKKRHEHDIP VPKKRHGSESCLISPAASADNACCKKNRSLSSRRPSSKCSMDSEVDIMGEKILELGGEEALESAQTLLSIGVELKPC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30935	WRKY	ATWRKY32, WRKY3...	WRKY DNA-binding protein 32 (....		Potri.006G264000 [exp]	0	1
AT1G64050			unknown protein		Potri.003G133100 [exp]	3.46	0.7815
AT1G17665			unknown protein		Potri.003G038600 [exp]	8.94	0.7578
AT3G60500		G3, CER7	ECERIFERUM 7, 3'-5'-exoribonuc...		Potri.001G253200 [exp]	9.79	0.7551
AT5G03415	E2F_DP	ATDPB, DPB	Transcription factor DP (.1.2)		Potri.006G124200 [exp]	10.72	0.7122
AT1G10520		AtPol{lambda}	DNA polymerase {lambda}, DNA p...		Potri.010G094800 [exp]	11.66	0.7739
AT1G55340			Protein of unknown function (D...		Potri.019G035300 [exp]	13.49	0.7359
AT5G66180			S-adenosyl-L-methionine-depend...		Potri.007G056800 [exp]	15.65	0.7523
AT1G70480			Domain of unknown function (DU...		Potri.010G041700 [exp]	18.49	0.6908
AT5G50970			transducin family protein / WD...		Potri.012G108100 [exp]	18.76	0.7126
AT1G17520	MYB		Homeodomain-like/winged-helix ...		Potri.006G147400 [exp]	18.97	0.7368

Compare expression of checked genes

Potri.006G264000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.