Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10840 1059 / 0 Endomembrane protein 70 protein family (.1) AT5G25100 1053 / 0 Endomembrane protein 70 protein family (.1.2) AT2G24170 976 / 0 Endomembrane protein 70 protein family (.1) AT3G13772 917 / 0 AtTMN7 transmembrane nine 7 (.1) AT1G55130 903 / 0 AtTMN6 transmembrane nine 6, Endomembrane protein 70 protein family (.1) AT5G35160 501 / 5e-170 Endomembrane protein 70 protein family (.1.2) AT4G12650 465 / 3e-156 Endomembrane protein 70 protein family (.1) AT2G01970 348 / 1e-111 Endomembrane protein 70 protein family (.1) AT5G37310 328 / 1e-103 Endomembrane protein 70 protein family (.1) AT1G14670 324 / 2e-102 Endomembrane protein 70 protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G018400 [exp] 1175 / 0 AT5G10840 1070 / 0.0 Endomembrane protein 70 protein family (.1) Potri.018G106600 [exp] 1029 / 0 AT2G24170 971 / 0.0 Endomembrane protein 70 protein family (.1) Potri.006G184200 [exp] 1025 / 0 AT2G24170 961 / 0.0 Endomembrane protein 70 protein family (.1) Potri.003G038700 [exp] 927 / 0 AT3G13772 1085 / 0.0 transmembrane nine 7 (.1) Potri.006G189300 [exp] 526 / 6e-180 AT5G35160 1122 / 0.0 Endomembrane protein 70 protein family (.1.2) Potri.018G113500 [exp] 516 / 4e-176 AT5G35160 1127 / 0.0 Endomembrane protein 70 protein family (.1.2) Potri.002G217300 [exp] 484 / 2e-163 AT4G12650 1122 / 0.0 Endomembrane protein 70 protein family (.1) Potri.014G172200 [exp] 480 / 6e-162 AT4G12650 1115 / 0.0 Endomembrane protein 70 protein family (.1) Potri.017G144181 [exp] 335 / 2e-106 AT5G37310 979 / 0.0 Endomembrane protein 70 protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026254 [exp] 1098 / 0 AT5G10840 1129 / 0.0 Endomembrane protein 70 protein family (.1) Lus10042415 [exp] 1097 / 0 AT5G10840 1129 / 0.0 Endomembrane protein 70 protein family (.1) Lus10000222 [exp] 1026 / 0 AT5G10840 1071 / 0.0 Endomembrane protein 70 protein family (.1) Lus10015624 [exp] 941 / 0 AT3G13772 1133 / 0.0 transmembrane nine 7 (.1) Lus10037643 [exp] 935 / 0 AT3G13772 1134 / 0.0 transmembrane nine 7 (.1) Lus10027831 [exp] 528 / 2e-180 AT5G35160 1104 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10005060 [exp] 508 / 8e-173 AT5G35160 1100 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10016072 [exp] 495 / 1e-167 AT4G12650 1123 / 0.0 Endomembrane protein 70 protein family (.1) Lus10019073 [exp] 395 / 1e-129 AT5G35160 749 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10031308 [exp] 327 / 2e-103 AT2G01970 1061 / 0.0 Endomembrane protein 70 protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02990 [poplar] [flax] EMP70 Endomembrane protein 70
Representative CDS sequence Show only first row Show all	>Potri.006G264500.1 pacid=42767699 polypeptide=Potri.006G264500.1.p locus=Potri.006G264500 ID=Potri.006G264500.1.v4.1 annot-version=v4.1 ATGGCGCCTCGCGCGAGATCGAGATCTCTGCTGTTGCCGATATGTACAATTCTCACAATCCTTATTCATGGCGCTCACTCCTTCTACCTCCCTGGCGTCG CTCCTCAGGATTTCATTAACGGTGCTGAGTTGATGGTGAAAGTGAACAAATTGACCTCTATAAAAACACAACTTCCTTACTCATACTATACTCTTCCTTT CTGTACCCCATCCAAAATTGTAGACAGTGCAGAGAATCTTGGGGAAGTACTTCGTGGTGATCGCATTGAAAACTCCCCCTATGCGTTTAACATGGGGGAT GCAAAGATGTGCAATGTTCTTTGCCGGAAAACACTTGATTCCAAAACTGCAAAGGCATTCAAAGAGAAGATTGATGACGAGTATCGGGTTAACATGATCC TTGATAACCTTCCTCTTGTTGTTCCCATCCAAAGGCTGGACCAGGAATCTCCTCCTGTTTATCAGCTTGGATATCATGTTGGGCTCAAAGGCCAATACAG TGGGGTATGTGCATTATTGCACTTAAATTTCCCCTTCTTAATGTGTTGGTTTTTTCTTGTGCTTACATTGTCTGGTTATATGCAGAGCAAAGAGGAAAAA TATTTTATCCACAATCACCTGTCATTCATTGTTAAGTATCATAAAGATCCTCAATCTAATTCTGCAAGAATTGTTGGATTTGAAGTAAAACCATTCAGTG TTAAACATGCATATGAAGGGAAGTGGAATGATGAGAAGCCTCGATTAACAACATGTGACCCCCACACAAGACATACTGTTGTTAATTCTAACACTCCTCA AGAAGTTGAAGACAAAGCGGAAATCATTTTCACATACGATGTTGAATTCCAGGATAGTGATGTGAAGTGGGCTTCCAGATGGGATGCCTATCTCTTAATG ACTGATGACCAAATTCACTGGTTCTCAATTGTAAATTCTTTGATGATTGTTCTCTTCCTCTCTGGCATGGTGGCTATGATCATGCTACGAACCCTTTACC GTGATATATCGAAGTACAATGAACTTGAGACCCAGGAGGAAGCTCAAGAAGAGACTGGATGGAAGCTTGTTCATGGAGATGTTTTCAGGCCTCCATCTAA TTCAGATCTGCTGTGTGTCTATGTTGGAACTGGCGTTCAGTTTTTTGGAATGATCCTTGTTACCATGATCTTTGCCATTCTCGGATTCCTTTCCCCTTCA AACAGAGGTGGTCTTATGACAGCCATGCTCTTACTTTGGGTTTTCATGGGCATTTTTGCTGGCTATGCCTCGACCCGGTTATATAAAATGTTCAAAGGAT CAGAATGGAAGAAAATAGCACTCAGGACTGCAGTCATGTTCCCAGGGGTCGTCTCTGCCATTTTCTTTGTCTTGAACGCTCTCATTTGGGGCCAGAAATC TTCTGGGGCTGTGCCATTTGGGACAATGTTTGCTCTTATATTCTTATGGTTTGGAATTTCAGTTCCCCTAGTGTTTGTTGGAAGCTATATTGGGTTCAAG AAGCCAGCAATTGAGGACCCTGTGAAGACAAACAAAATTCCGAGACAGATCCCAGAGCAGGCTTGGTACATGAACCCAGCCTTCTCAATCCTAATCGGAG GAATTCTTCCATTTGGAGCTGTTTTCATCGAGCTTTTCTTCATTCTCACCTCGATCTGGCTGAATCAATTCTACTACATCTTTGGTTTTCTGTTCCTCGT TTTCGCAATACTCTTGGTCACCTGTGCTGAAATAACAATTGTCCTCTGCTACTTCCAGTTATGCAGCGAGGACTACCTCTGGTGGTGGAGGTCATACCTC ACATCCGGTTCCTCAGCACTGTACCTCTTCCTCTATGCAACATTCTACTTCTTCACAAAGCTTGAGATAACCAAACTTGTTTCAGGGGCCTTGTACTTCG GATACATGCTAATTGCATCGTATGCATTTTTCGTGCTAACGGGGACAATCGGATTCTATGCATGCTTATGGTTCACAAGGCTCATCTATTCGTCAGTGAA AATTGATTAA
AA sequence Show only first row Show all	>Potri.006G264500.1 pacid=42767699 polypeptide=Potri.006G264500.1.p locus=Potri.006G264500 ID=Potri.006G264500.1.v4.1 annot-version=v4.1 MAPRARSRSLLLPICTILTILIHGAHSFYLPGVAPQDFINGAELMVKVNKLTSIKTQLPYSYYTLPFCTPSKIVDSAENLGEVLRGDRIENSPYAFNMGD AKMCNVLCRKTLDSKTAKAFKEKIDDEYRVNMILDNLPLVVPIQRLDQESPPVYQLGYHVGLKGQYSGVCALLHLNFPFLMCWFFLVLTLSGYMQSKEEK YFIHNHLSFIVKYHKDPQSNSARIVGFEVKPFSVKHAYEGKWNDEKPRLTTCDPHTRHTVVNSNTPQEVEDKAEIIFTYDVEFQDSDVKWASRWDAYLLM TDDQIHWFSIVNSLMIVLFLSGMVAMIMLRTLYRDISKYNELETQEEAQEETGWKLVHGDVFRPPSNSDLLCVYVGTGVQFFGMILVTMIFAILGFLSPS NRGGLMTAMLLLWVFMGIFAGYASTRLYKMFKGSEWKKIALRTAVMFPGVVSAIFFVLNALIWGQKSSGAVPFGTMFALIFLWFGISVPLVFVGSYIGFK KPAIEDPVKTNKIPRQIPEQAWYMNPAFSILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFLVFAILLVTCAEITIVLCYFQLCSEDYLWWWRSYL TSGSSALYLFLYATFYFFTKLEITKLVSGALYFGYMLIASYAFFVLTGTIGFYACLWFTRLIYSSVKID

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10840			Endomembrane protein 70 protei...		Potri.006G264500 [exp]	0	1
AT4G31480			Coatomer, beta subunit (.1.2)		Potri.018G007400 [exp]	1.41	0.9776
AT5G11980			conserved oligomeric Golgi com...		Potri.006G225500 [exp]	2.44	0.9702
AT1G13730			Nuclear transport factor 2 (NT...		Potri.010G157800 [exp]	3.00	0.9458
AT5G05010			clathrin adaptor complexes med...		Potri.015G125400 [exp]	4.58	0.9645
AT4G34450			coatomer gamma-2 subunit, puta...		Potri.004G153500 [exp]	4.69	0.9433
AT1G30630			Coatomer epsilon subunit (.1)		Potri.011G155800 [exp]	5.65	0.9530	COPE2.1
					Potri.009G092300 [exp]	5.91	0.9467	AGP9.1
					Potri.001G297466 [exp]	6.32	0.9406
AT3G02350		GAUT9	galacturonosyltransferase 9 (....		Potri.017G106800 [exp]	7.48	0.9366
AT5G13430			Ubiquinol-cytochrome C reducta...		Potri.003G162200 [exp]	8.66	0.9379

Compare expression of checked genes

Potri.006G264500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.