Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31850 1428 / 0 PGR3 proton gradient regulation 3 (.1) AT3G06920 365 / 2e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G55840 348 / 5e-102 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59900 320 / 7e-94 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G14770 291 / 4e-83 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63130 278 / 3e-81 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 277 / 7e-81 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 276 / 2e-80 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G19440 277 / 3e-79 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G74580 276 / 4e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G014100 [exp] 370 / 6e-112 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G368700 [exp] 350 / 9e-103 AT5G55840 1272 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.019G043101 [exp] 339 / 1e-99 AT5G14770 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 331 / 1e-96 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G236800 [exp] 325 / 2e-95 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 303 / 1e-89 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G040200 [exp] 305 / 3e-88 AT1G19290 883 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 296 / 3e-87 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G015900 [exp] 294 / 7e-86 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003424 [exp] 1508 / 0 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10026884 [exp] 780 / 0 AT4G31850 746 / 0.0 proton gradient regulation 3 (.1) Lus10043417 [exp] 380 / 1e-115 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012139 [exp] 339 / 2e-100 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010410 [exp] 337 / 1e-99 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010407 [exp] 323 / 1e-94 AT5G59900 981 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026206 [exp] 323 / 3e-93 AT5G14770 717 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10037968 [exp] 309 / 2e-88 AT5G55840 1131 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042529 [exp] 296 / 6e-84 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008185 [exp] 293 / 1e-83 AT1G19290 864 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.006G264800.2 pacid=42768238 polypeptide=Potri.006G264800.2.p locus=Potri.006G264800 ID=Potri.006G264800.2.v4.1 annot-version=v4.1 ATGGCTGTGTTAATACTTAGCTCTTCGAGTATGTGTTGTAGTTGTATCGATTATAGTATTGCTTTTAGTGAGCAGAATAGGTTGTCTGATTTCAGACATA AAAATGGGTCATTAGGAGGTGAAAAGTTTGGAACTTTGAGGGTTTTCCCGTTTGGGTCTAATGTAAATTGGAAGAAAAATAACAAAAAACAAGTGGCTTT TTGTGGGTTTGCATTGAAAAGCCAGAATGAGGAGCTGGTGGTGAATGGGAAGCCGAGAAAGGGGTCATCTTCTGATGAAGTTTTGGGAGTTCTTCACTCA ATTTCAGACCCAATTCATGCTCTTTTTTACTTTAAATCAGTTGGTGAGTTGCCAAATGTTGTTCACACCACTGAAACCTGTAATCATATGCTTGAAATAT TGAGGGTTCATAGGAGGGTGGAGGATATGGCTTTTGTGTTTGACTTGATGCAAAGGCAAATAATTAGGAGGAATGTGGATACTTATTTGATTATATTTAA GAGTCTTTTTATCAGGGGTGGCCTGAGGCAAGCACCGTCTGCCCTTGAAAAGATGAGGGAGGCAGGGTTTGTTTTGAATGCTTATTCATATAATGGGTTG ATCCATTTTCTACTTCAGTCTGGATTTTGTAAGGAGGCGTTGGAGGTGTATAGAAGAATGGTCTCGGAAGGTCTTAAACCTAGCCTTAAGACGTTCTCTG CACTTATGGTAGCATCAGGGAAGAGAAGGAATATTAAAACTGTGATGGGTTTGCTGGAAGAGATGGAGAGTATGGGATTGAGGCCTAATATTTACACATA CACCATTTGCATTAGAGTACTTGGGAGAGATGGGAAAATTGACGAAGCATATAGGATTATGAAGAGAATGGATGATGATGGATGCGGTCCTGATGTCGTC ACTTACACAGTTCTCATTGATGCTCTTTGTACTGCCAGAAAGCTTGACGACGCTATGTGTTTGTTCACAAAAATGAAATCAAGCAGTCATAAACCTGATA AGGTAACCTATGTAACCTTGTTGGACAAGTTCAGCGATTGTGGACACTTGGACAAAGTGGAAAAAATTTGGACTGAAATGGAAGCTGATGGTTATGCTCC TGATGTGGTTACGTTTACCATACTTGTTAATGCCTTATGCAAAGCTGGTAGAATTAATGAAGCCTTTGATCTGTTGGATACCATGAGAAAGCAAGGGGTC TTACCAAATCTCCATACTTACAACACATTGATTTCTGGACTTTTGAGGGCAAACAGGTTAGATGATGCATTGGATCTTTTCAGTAATATGGAATCTCTGG GTGTTGAACCCACTGCTTATACATATATCCTTTTAATTGACTACCATGGAAAGTCTGGTCACCCTGGAAAAGCTCTCGAGACCTTTGAGAAGATGAAAGC TAGAGGAATTGCTCCTAACATTGTTGCTTGCAATGCATCTTTGTATAGTCTTGCTGAAATGGGAAGGCTTGGTGAAGCAAAAGCTATGTTTAACGAGCTT AAAAGTAGTGGGCTTGCTCCAGATTCAGTGACCTATAACATGATGATGAAATGCTATAGTAAGGTAGGGCAAGTGGATGAAGCCATCAAGTTACTATCTG AGATGTCAAAAGTTCAGTGTGAACCCGATGTAATCGTCATTAATTCTTTGATTGACACACTTTACAAGGCTGGCCGAGTGGAAGAGGCATGGCAAATGTT TTGCAGAATGGAGGAGATGAACCTTGCTCCTACAGTTGTGACCTACAACATATTACTAGCTGGATTAGGGAAAGAGGGTCAAATCCAAAAAGCTGTTCAG CTATTTGAGAGTATGAATGGGCATGGGTGTTCACCAAACACAATTACTTTCAATACACTCTTGGATTGCCTTTGCAAGAATGATGAGGTTGATTTGGCCC TGAAAATGTTCTACAAAATGACAACAATGAATTGCAGACCTGATGTTCTAACTTTCAACACAATCATTCATGGTTTTATTAAACAAAACCAAATTAAAAA TGCAATCTGGCTCTTCCATCAGATGAAGAAATTGCTCAGACCTGATCATGTGACTTTGTGCACGCTCCTTCCTGGTGTTATAAAGAGTGGGCAGATAGAG GATGCTTTCAGGATCACTGAGGACTTTTTTTATCAGGTTGGATCTAACATAGACAGGTCATTTTGGGAAGATGTTATGGGAGGCATTTTGACTGAGGCTG GAACAGAAAAGGCCATTTTATTTGGTGAAAGATTGGTATGCCGTGCTATTTGCAAGGATGACTCTGTATTAATACCTATAATTAAGGTTTTGTGTAAGCA TAAGAAAACCTCTGTTGCTCGAAATGTATTTGTGAAGTTCACAAAGGAACTGGGAGTGAAACCAACACTCAAAGTGTACAACTTGTTGATTGATGGGTTT CTAGAAGTTCATAATGTTGAAGTGGCCTGGAATCTTTTTGAGGAGATGAAGAGTGCTGGCTGTGCTCCAGATACATTCACCTACAATTCTTTAATTGATG CTCATGGGAAGTCTGGGAAGATCAATGAACTTTTTGATCTGTATGATGAAATGCTAACTAGGGGATGCAAGCCCAACACCATAACTTACAACATGGTCAT CTCCAATCTAGTGAAATCTAATAGATTGGACAAGGCTATGGATTTGTATTACAATCTTGTTAGTGGTGATTTCTCTCCCACTCCTTGTACCTTTGGCCCC CTTATAGATGGACTTCTGAAGTCAGGGAGACTTGATGATGCACATGAAATGTTTGACGGGATGGTACACTATGGATGCAGGCCTAACAGTGCTATTTACA ATATTCTTGTAAATGGTTATGGGAAATTGGGTCATGTGGATACTGCTTGCGAGTTCTTTAAAAGGATGGTCAAAGAAGGGATAAGACCAGACTTGAAGTC TTACACCATTCTTGTTGATATCCTATGCATCGCAGGGAGAGTGGATGATGCTTTGCACTACTTTGAGAAACTAAAGCAGGCTGGCCTAGATCCAGACTTG GTAGCTTATAACCTCATGATTAATGGGCTTGGACGATCACAAAGGACAGAAGAAGCTCTATCTCTTTTTCATGAAATGCAGAATAGAGGGATCGTGCCTG ATCTTTACACTTACAATTCCTTGATACTCAATCTTGGGATTGTTGGAATGATAGAGGAAGCAGGGAAGATATATGAAGAACTACAATTTATAGGCCTTAA ACCTAATGTGTTCACCTATAATGCTCTTATTCGTGGATACACCCTCTCTGGAAATTCTGAACTTGCCTATGGCATCTACAAGAAGATGATGGTTGGTGGT TGCGACCCCAATACTGGAACTTTTGCTCAGCTTCCTAATCAATCCTGA
AA sequence Show only first row Show all	>Potri.006G264800.2 pacid=42768238 polypeptide=Potri.006G264800.2.p locus=Potri.006G264800 ID=Potri.006G264800.2.v4.1 annot-version=v4.1 MAVLILSSSSMCCSCIDYSIAFSEQNRLSDFRHKNGSLGGEKFGTLRVFPFGSNVNWKKNNKKQVAFCGFALKSQNEELVVNGKPRKGSSSDEVLGVLHS ISDPIHALFYFKSVGELPNVVHTTETCNHMLEILRVHRRVEDMAFVFDLMQRQIIRRNVDTYLIIFKSLFIRGGLRQAPSALEKMREAGFVLNAYSYNGL IHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVV TYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGV LPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNEL KSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQ LFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTIIHGFIKQNQIKNAIWLFHQMKKLLRPDHVTLCTLLPGVIKSGQIE DAFRITEDFFYQVGSNIDRSFWEDVMGGILTEAGTEKAILFGERLVCRAICKDDSVLIPIIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGF LEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGP LIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDL VAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMVGG CDPNTGTFAQLPNQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31850		PGR3	proton gradient regulation 3 (...		Potri.006G264800 [exp]	0	1
AT2G46915			Protein of unknown function (D...		Potri.002G183900 [exp]	1.41	0.9595
AT4G30825			Tetratricopeptide repeat (TPR)...		Potri.006G005100 [exp]	2.00	0.9560
AT1G80030			Molecular chaperone Hsp40/DnaJ...		Potri.003G031800 [exp]	3.46	0.9544
AT4G17300		ATNS1, NS1, OVA...	ovule abortion 8, Class II ami...		Potri.007G129800 [exp]	6.00	0.9539
AT2G46340		SPA1	SUPPRESSOR OF PHYA-105 1, SPA ...		Potri.014G095300 [exp]	8.71	0.9245	SPA1.1
AT1G79080			Pentatricopeptide repeat (PPR)...		Potri.011G144300 [exp]	9.16	0.9314
AT3G53920		SIG3, SIGC	SIGMA FACTOR 3, RNApolymerase ...		Potri.006G234400 [exp]	11.40	0.9495
AT2G23840			HNH endonuclease (.1)		Potri.019G033200 [exp]	18.38	0.9352
AT4G00370		PHT4;4, ANTR2	anion transporter 2, Major fac...		Potri.014G085700 [exp]	20.04	0.9475	ANTR2.2
AT1G64860		SIGB, SIG2, SIG...	RNApolymerase sigma subunit 2,...		Potri.013G075400 [exp]	24.00	0.9414

Compare expression of checked genes

Potri.006G264800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.