Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29230 363 / 1e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G45350 349 / 5e-114 CRR4 CHLORORESPIRATORY REDUCTION 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 350 / 7e-113 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 348 / 6e-112 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G44880 327 / 8e-106 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G21470 317 / 2e-102 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G12770 316 / 3e-100 MEF22 mitochondrial editing factor 22 (.1) AT4G38010 309 / 5e-99 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G11460 309 / 2e-98 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 312 / 5e-98 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G258766 [exp] 358 / 5e-118 AT1G06150 705 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.008G121400 [exp] 355 / 4e-117 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G125500 [exp] 356 / 9e-117 AT3G29230 829 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044700 [exp] 359 / 2e-116 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G140400 [exp] 351 / 3e-115 AT3G29230 398 / 2e-132 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 353 / 1e-114 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G072500 [exp] 343 / 3e-112 AT3G21470 565 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.014G046200 [exp] 344 / 4e-112 AT2G44880 676 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.003G031600 [exp] 345 / 1e-110 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018223 [exp] 348 / 3e-112 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 346 / 2e-111 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 345 / 3e-111 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017243 [exp] 338 / 1e-110 AT1G13410 539 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004052 [exp] 339 / 7e-110 AT1G31430 684 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10027455 [exp] 337 / 7e-110 AT3G29230 324 / 4e-102 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003422 [exp] 338 / 8e-110 AT2G44880 679 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015874 [exp] 338 / 1e-109 AT2G45350 687 / 0.0 CHLORORESPIRATORY REDUCTION 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021068 [exp] 335 / 2e-109 AT1G13410 533 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021069 [exp] 335 / 2e-109 AT1G13410 533 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.006G265200.1 pacid=42770130 polypeptide=Potri.006G265200.1.p locus=Potri.006G265200 ID=Potri.006G265200.1.v4.1 annot-version=v4.1 ATGGCAGGCTTGGCCTACAATTGCGTCTTGCCGTCCCCTGAAATGCGACAATGGAATGAGATTATCAAGAAACACGTGCTCAATGGTGATGCAGTTCAAG CTATGGTAACGTATGTCAATGTGCAAGAAATTGGCTTTCATGCTGATAACTTCACTTTCCCTATTTTACTCAAAGCAGCCGGGAGTTGGTCTAGTCCTTG TATTGGGCTAGCCCTCCATGGCCAGACAATAAAAGCAGGTTTCTCCAGCCATGTTTTTGTCCAAACTGCTCTGCTGAACATGTACAGGTCTCATAGTTGC GTTGCTGATGCTTGTAAAGTGTTTGAGAAGATGCCTGTCAAAGATGTGGTTGCTTGGAATTCCATTTTAGATGCCTATGCTTCTACTGATCAGATGGATG ATGCACTCAAAGTGTTCAATTCCATGCCTTTAAAGGACCTCTCATCTTTCAATATCATGATTTCTGGGTACTCAAGCATTGGAAAGACACTGTCTGCGAG AAGTATCTTTGATAACATGGCAGAGAAAGATATTGTCTCTTGGAACTCAATGATATCAGCATATATCCAAGGTGAGGATATGGAAAGAGCTTGTGATTTG TTTAGGGAAATGCCAGCGAAGAACATCATCACATGGAATACAATGGTAAAAGGGTTTCTACAAAATCAACTTTATGGTGAGGTTCTTGATTTGTTTGACG AAATGAAGACTACAAATTGCTTGCCTGATTATCTTACAGTGACTGGTGTTTTATCTGCATGTGCCCATTCGGGATCGCTGAAAAAAGGAACCGAAGTACA CATATATGCCATTGATAACGGACTTGCATCAAGTCCCCATGTAACAACAGCTTTGATCGATATGTATGCCAAATGTGGAAGCATACAGCAAGGTTTACAG GTTTTCTACAAGTCGCAAGTTAAGGATATTTACTGTTGGAATGCATTGATTTCCGGGCTTGCACTTCACGGCCATGGCTATGCTGCTCTCAATATATTCA ACAAGATGAGAAAGAACCATACAAGGCCTGACGATATTACCTTCATAGGCTTGCTTAGTGCTTGTAGCCATTCAGGTTTAGTGCAAGAAGGTAGCCAATT GTTTTATAGCATGCAAAAGGAATTCGGAATATCTCCCAAAATAGAGCATTACGGATGCATGGTTGATCTTCTTAGTAGAGCAAGGCATCTTGATTGCGCA TTACAACTAATCAAAACTATGCCATTCAAGCCAGGAGAAGCCATCTTGGGTGCTTTGCTTAGTGCCTGTATAGTTCATCAGGATCTTGAGGTTGGTGAGA GAGTTGTAAAGCTTGTTTCTTCTAGGGGTAACTACCTTAGCGATGGAGAGCTCATGATGTTCTCTAACTTGTATGCATCATGTGGTCAATGGGAAGAAGC GAACAAATGGAGAGAGATGATGAATGACACAGGCATTGTTAAAACTGCTGGATTCAGTGTGGTTGAAGTTAATGGAAAGTTTCACAAGTTCCTGGCTGGG TAA
AA sequence Show only first row Show all	>Potri.006G265200.1 pacid=42770130 polypeptide=Potri.006G265200.1.p locus=Potri.006G265200 ID=Potri.006G265200.1.v4.1 annot-version=v4.1 MAGLAYNCVLPSPEMRQWNEIIKKHVLNGDAVQAMVTYVNVQEIGFHADNFTFPILLKAAGSWSSPCIGLALHGQTIKAGFSSHVFVQTALLNMYRSHSC VADACKVFEKMPVKDVVAWNSILDAYASTDQMDDALKVFNSMPLKDLSSFNIMISGYSSIGKTLSARSIFDNMAEKDIVSWNSMISAYIQGEDMERACDL FREMPAKNIITWNTMVKGFLQNQLYGEVLDLFDEMKTTNCLPDYLTVTGVLSACAHSGSLKKGTEVHIYAIDNGLASSPHVTTALIDMYAKCGSIQQGLQ VFYKSQVKDIYCWNALISGLALHGHGYAALNIFNKMRKNHTRPDDITFIGLLSACSHSGLVQEGSQLFYSMQKEFGISPKIEHYGCMVDLLSRARHLDCA LQLIKTMPFKPGEAILGALLSACIVHQDLEVGERVVKLVSSRGNYLSDGELMMFSNLYASCGQWEEANKWREMMNDTGIVKTAGFSVVEVNGKFHKFLAG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G29230			Tetratricopeptide repeat (TPR)...		Potri.006G265200 [exp]	0	1
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Potri.016G021800 [exp]	4.89	0.9704
AT1G08380		PSAO	photosystem I subunit O (.1)		Potri.004G199400 [exp]	5.29	0.9740
AT3G54890		LHCA1	photosystem I light harvesting...		Potri.008G041000 [exp]	5.65	0.9677	2
AT5G64040		PSAN, PSI-N	photosystem I reaction center ...		Potri.007G105900 [exp]	7.54	0.9732
AT1G20340		PETE2, DRT112	PLASTOCYANIN 2, DNA-DAMAGE-REP...		Potri.002G016000 [exp]	7.74	0.9715	PETE.2
AT4G27220			NB-ARC domain-containing disea...		Potri.011G124366 [exp]	8.94	0.9616
AT3G61470		LHCA2	photosystem I light harvesting...		Potri.001G056700 [exp]	9.74	0.9710
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Potri.016G021300 [exp]	11.00	0.9665
AT4G27220			NB-ARC domain-containing disea...		Potri.011G124212 [exp]	11.48	0.9602
AT1G52230		PSAH2, PSAH-2, ...	PHOTOSYSTEM I SUBUNIT H-2, pho...		Potri.003G052500 [exp]	12.12	0.9690	Pt-PSAH.1

Compare expression of checked genes

Potri.006G265200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.