Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10820 620 / 0 Major facilitator superfamily protein (.1) AT1G79710 478 / 1e-165 Major facilitator superfamily protein (.1) AT5G25050 449 / 6e-154 Major facilitator superfamily protein (.1) AT5G25040 390 / 6e-131 Major facilitator superfamily protein (.1.2.3) AT2G32040 163 / 6e-44 Major facilitator superfamily protein (.1) AT5G54860 104 / 9e-24 Major facilitator superfamily protein (.1) AT1G04570 103 / 2e-23 Major facilitator superfamily protein (.1) AT1G64890 82 / 2e-16 Major facilitator superfamily protein (.1) AT2G33280 81 / 4e-16 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G017400 [exp] 877 / 0 AT5G10820 612 / 0.0 Major facilitator superfamily protein (.1) Potri.018G017100 [exp] 494 / 4e-172 AT5G25050 580 / 0.0 Major facilitator superfamily protein (.1) Potri.006G266000 [exp] 487 / 6e-169 AT5G25050 579 / 0.0 Major facilitator superfamily protein (.1) Potri.001G041600 [exp] 460 / 9e-159 AT1G79710 586 / 0.0 Major facilitator superfamily protein (.1) Potri.010G085900 [exp] 156 / 3e-41 AT2G32040 650 / 0.0 Major facilitator superfamily protein (.1) Potri.019G043000 [exp] 106 / 1e-24 AT1G64890 488 / 3e-171 Major facilitator superfamily protein (.1) Potri.011G137400 [exp] 104 / 1e-23 AT5G54860 609 / 0.0 Major facilitator superfamily protein (.1) Potri.011G137300 [exp] 103 / 2e-23 AT5G54860 633 / 0.0 Major facilitator superfamily protein (.1) Potri.008G173600 [exp] 99 / 5e-22 AT1G04570 502 / 6e-174 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026890 [exp] 635 / 0 AT5G10820 558 / 0.0 Major facilitator superfamily protein (.1) Lus10003419 [exp] 478 / 2e-165 AT5G25050 625 / 0.0 Major facilitator superfamily protein (.1) Lus10026893 [exp] 476 / 2e-164 AT5G25050 628 / 0.0 Major facilitator superfamily protein (.1) Lus10041620 [exp] 447 / 1e-153 AT1G79710 644 / 0.0 Major facilitator superfamily protein (.1) Lus10024099 [exp] 435 / 1e-148 AT1G79710 630 / 0.0 Major facilitator superfamily protein (.1) Lus10010565 [exp] 161 / 8e-43 AT2G32040 721 / 0.0 Major facilitator superfamily protein (.1) Lus10006106 [exp] 160 / 1e-42 AT2G32040 721 / 0.0 Major facilitator superfamily protein (.1) Lus10037809 [exp] 95 / 2e-20 AT5G54860 630 / 0.0 Major facilitator superfamily protein (.1) Lus10023708 [exp] 86 / 1e-17 AT1G04570 451 / 3e-154 Major facilitator superfamily protein (.1) Lus10024977 [exp] 80 / 1e-15 AT1G64890 508 / 2e-179 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.006G265500.1 pacid=42770053 polypeptide=Potri.006G265500.1.p locus=Potri.006G265500 ID=Potri.006G265500.1.v4.1 annot-version=v4.1 ATGGATCCTCTTGAAACCCGAGAGCTAGTGGAGAAATCTCCAACAGATTCCTCAAAAAAAGATGATTGTCAGTCATCAAAAACATGTTCAAGAACAAGTC CTCTCTACATCCTCATGGAGCCATTTCAATGGCTACAAATGCTGTCTTCTCAGCTAAACCCCACATTTATTTTTGGTGTAGTTGTGGTGTATGGTTTTAG CCAGGGCTTATCTAGATCTTTCTTTAAAGTTGTTACAGACTACTACTGGAAAGATGTTCAAAAGGTTCAACCATCAGCAGTGCAGTTGTACATGGGCTTA TATTACATCCCATGGGTCATGAAACCAATTTGGGGTCTCTTTACTGATGTTTTTCCTGTCAGAGGATATAAGAGAAGGCCATACTTTATAGTGGCGGGTG TTCTTGGTTGTGTCTCAGCGTTGATGATAGCTCTTCTTGGTAAGGTGCCTATTGCTGTGGCCTTGAGTTGCTTGATAGGTATAACTGCTGGGGTTGCAAT AGCAGATGTGACTATTGATGCCTGTATTGCTAAAAACAGTATTGAGATCAGGGCATTGGCACCAGACATGCAGTCTCTATGTGGGTTTTGTTCTTCACTT GGGGCTTTGATTGGTTACTCTTCTAGTGGTTTTTTTGTTCACCATCTTGGACCTCAGGTATCATTGGTTCTTTTGGCAGTCCCACCAGCTTTATTGATAG TGTTAGGATTTGTGATCTATGAAGTGAGATCTACAAGTCTCCAATCTGAGAAGAAGAAGGCAGTGGAGGGCTTACAAATAGCATTAAGGGGCATGTCGAA AACTATTAAGCTGCCGCAAGTGTGGAAGCCATCACTGTACATGTATCTATCTTTGGCTCTCAGTATAAGTACTCATGAAGGGCACTTCTATTGGTATACA GATCCTAAAGCTGGTCCTGCATTCTCACAGGAGTTTGTCGGGATAATTTACGCAGTTGGTGCATTGGCTTCTATTGCTGGGGTTCTGATATATCAGAAGG CTCTGAAGAATTGTCCATTTAGAAGCCTAATCCTTTATGCACAACTCCTATATGGCATGTCCGGAATGCTTGATCTCACCTTTGTCCTTCGATGGAACTT AGCCCTTGGAATTCCTGATTACTTCTTTGTTATAGCGGAAGAATGTGTCACTCGAATCATATCCAGAATCAGGTGGATGCCAATGATTGTGTTAAGCACC CGGCTATGCCCTCTAGGCATCGAAGGGACATTTTTTGCACTATTAATGTGCATTGATAGCCTTGGCGCCCTCTCTTCCAAATGGGGAGGAGGAGTTCTTC TTCATCTATTTCATGTCACAAGGACTGATTTCACAAACTTGTGGCTGGTCATTCTCATAAGAAATTTTCTGAGGTTTGCAACACTAGGTTTGATTTTTCT TGTTCCCAGGGGTGATCAAGCAGATAGCTTGATCCCGTCGGATATCTTGACAGCAAATTCTGCTGCAAGTCTAGATGATGATGGCTTGGAACTTGTTCCT GTTAAGGAGACAAGTGAAGAAGTCCAGTTGCTTATTGACGAAAAATGA
AA sequence Show only first row Show all	>Potri.006G265500.1 pacid=42770053 polypeptide=Potri.006G265500.1.p locus=Potri.006G265500 ID=Potri.006G265500.1.v4.1 annot-version=v4.1 MDPLETRELVEKSPTDSSKKDDCQSSKTCSRTSPLYILMEPFQWLQMLSSQLNPTFIFGVVVVYGFSQGLSRSFFKVVTDYYWKDVQKVQPSAVQLYMGL YYIPWVMKPIWGLFTDVFPVRGYKRRPYFIVAGVLGCVSALMIALLGKVPIAVALSCLIGITAGVAIADVTIDACIAKNSIEIRALAPDMQSLCGFCSSL GALIGYSSSGFFVHHLGPQVSLVLLAVPPALLIVLGFVIYEVRSTSLQSEKKKAVEGLQIALRGMSKTIKLPQVWKPSLYMYLSLALSISTHEGHFYWYT DPKAGPAFSQEFVGIIYAVGALASIAGVLIYQKALKNCPFRSLILYAQLLYGMSGMLDLTFVLRWNLALGIPDYFFVIAEECVTRIISRIRWMPMIVLST RLCPLGIEGTFFALLMCIDSLGALSSKWGGGVLLHLFHVTRTDFTNLWLVILIRNFLRFATLGLIFLVPRGDQADSLIPSDILTANSAASLDDDGLELVP VKETSEEVQLLIDEK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10820			Major facilitator superfamily ...		Potri.006G265500 [exp]	0	1
					Potri.019G089200 [exp]	1.41	0.7356
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Potri.007G099000 [exp]	2.82	0.6654
AT3G60650			unknown protein		Potri.002G144400 [exp]	10.48	0.6011
AT3G57170			N-acetylglucosaminyl transfera...		Potri.006G044500 [exp]	16.73	0.6397
AT3G12600		ATNUDT16	nudix hydrolase homolog 16 (.1...		Potri.016G036700 [exp]	26.07	0.6192
AT5G63390			O-fucosyltransferase family pr...		Potri.015G092600 [exp]	51.64	0.5436
AT4G34770			SAUR-like auxin-responsive pro...		Potri.009G127400 [exp]	68.36	0.5196
AT5G06800	GARP		myb-like HTH transcriptional r...		Potri.016G048000 [exp]	78.84	0.5756
AT4G34040			RING/U-box superfamily protein...		Potri.005G139900 [exp]	83.62	0.5182
AT5G13910	AP2_ERF	LEAFY PETIOLE ...	LEAFY PETIOLE, Integrase-type ...		Potri.003G077700 [exp]	93.27	0.5462

Compare expression of checked genes

Potri.006G265500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.