Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25060 1182 / 0 RNA recognition motif (RRM)-containing protein (.1) AT5G10800 1085 / 0 RNA recognition motif (RRM)-containing protein (.1) AT1G54080 60 / 6e-09 UBP1A oligouridylate-binding protein 1A (.1.2) AT3G14100 59 / 7e-09 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G49600 57 / 4e-08 ATRBP47A RNA-binding protein 47A (.1) AT1G17370 57 / 4e-08 UBP1B oligouridylate binding protein 1B (.1.2) AT1G47490 55 / 2e-07 ATRBP47C RNA-binding protein 47C (.1.2) AT1G47500 55 / 2e-07 ATRBP47C' RNA-binding protein 47C' (.1) AT3G19130 53 / 7e-07 ATRBP47B RNA-binding protein 47B (.1) AT3G52120 53 / 9e-07 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G017200 [exp] 1494 / 0 AT5G25060 1179 / 0.0 RNA recognition motif (RRM)-containing protein (.1) Potri.009G054400 [exp] 64 / 3e-10 AT5G19350 554 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G034600 [exp] 57 / 5e-08 AT1G47490 439 / 2e-152 RNA-binding protein 47C (.1.2) Potri.002G128100 [exp] 56 / 9e-08 AT1G47490 404 / 6e-139 RNA-binding protein 47C (.1.2) Potri.004G017200 [exp] 54 / 3e-07 AT1G11650 423 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.011G138400 [exp] 53 / 6e-07 AT4G27000 463 / 1e-162 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G166100 [exp] 53 / 7e-07 AT1G17370 622 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.003G069000 [exp] 53 / 9e-07 AT1G17370 621 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.001G423400 [exp] 52 / 1e-06 AT4G27000 474 / 2e-166 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026892 [exp] 1350 / 0 AT5G25060 1271 / 0.0 RNA recognition motif (RRM)-containing protein (.1) Lus10042420 [exp] 1298 / 0 AT5G25060 1225 / 0.0 RNA recognition motif (RRM)-containing protein (.1) Lus10026251 [exp] 1293 / 0 AT5G25060 1223 / 0.0 RNA recognition motif (RRM)-containing protein (.1) Lus10031277 [exp] 59 / 1e-08 AT5G19350 558 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10031844 [exp] 58 / 2e-08 AT5G19350 556 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10012070 [exp] 58 / 2e-08 AT1G49600 470 / 5e-165 RNA-binding protein 47A (.1) Lus10012071 [exp] 58 / 2e-08 AT1G49600 442 / 2e-155 RNA-binding protein 47A (.1) Lus10027911 [exp] 56 / 5e-08 AT1G49600 411 / 3e-143 RNA-binding protein 47A (.1) Lus10014029 [exp] 55 / 2e-07 AT3G19130 455 / 1e-160 RNA-binding protein 47B (.1) Lus10021754 [exp] 54 / 4e-07 AT1G47490 509 / 1e-179 RNA-binding protein 47C (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0221 [poplar] [flax] PF01805 [poplar] [flax] Surp Surp module CL0020 [poplar] [flax] TPR PF04818 [poplar] [flax] CID CID domain CL0020 [poplar] [flax] PF08312 [poplar] [flax] cwf21 cwf21 domain
Representative CDS sequence Show only first row Show all	>Potri.006G265700.3 pacid=42768614 polypeptide=Potri.006G265700.3.p locus=Potri.006G265700 ID=Potri.006G265700.3.v4.1 annot-version=v4.1 ATGAGTTCTTTCTCCATTACGAGAAAAAAGACGCCATTCCAGAAGCATAGAGAGGAAGAAGAGGCAAAGAAAAAGAGAGCGGAGGATGAAACAGCTCGAT TGTATGCGGAGTTCGTGGAGTCATTTCAAGGGGATAATGCACCTGGATCGAAGACTTTTGTTCGAGGTGGAACCATCAATCCCAATGAGAAATTGAAGAG TGATGCTGAAGGTGAAAAGTCCAAAGATGGGGTATCTGTTCCAAAGAAGGGAAGTAGGTATGTTCCATCTTTTATACCACCTCCTATGGCACCTAAAGGA AAAGAACCTGAGAGGAAGAGGGAGGAGGAAAGACCAAAGGAGAAGGAAAAGGGAAAGACTCGAAACATAGATCATTTTATGGAGGAGCTGAAGCATGAGC ATGAGATGAGGGAGAGGCGAAATCAAGAACGGGAACATTGGCGTGAAGGACGTCATACTGAAAGTTCTGCTCCATCTAGTCGATTTGATGAACTACCTGA TGACTTTGATCCAAGTGGAAAGCTGCCTGGATCATTTGATGATGGTGATCCACAAACTACAAATCTTTATGTTGGGAATCTCTCACCACAGGTTGATGAG AATTTTCTTCTGCGGACTTTTGGAAGATTTGGGCCTATTGCTAGTGTGAAGATAATGTGGCCCAGGACAGAGGAGGAGCGGAGGCGGCAAAGAAACTGTG GATTCGTAGCATTCATGAATAGAGCTGATGGGCAGGCTGCAAAGGATGAAATGCAAGGAGTTATTGTGTATGAATATGAGTTGAAAATCGGGTGGGGTAA ATCTGTGGCCCTTCCATCGCAGGCATTACCTGCTCCACCACCAGGACAAATGGCTATCAGAAGTAAAGAGGGTGCAACTGTGATTCTCTCTGGTCCATCA GGCCCGCCAGTCACTTCTGTCCCAAATCAGAACTCTGAACTGGTTCTTACTCCAAATGTTCCTGATATAATGGTCGCTCCACCCGAGGATGATCATCTCC GCCATGTGATAGATACAATGGCTCTATATGTTCTGGATGGAGGATGTGCTTTTGAACAAGCTATAATGCAGAGGGGTCGAGGGAATCCTCTTTTCAACTT CTTGTTCGAGCTTGGCTCGAAGGAACATACTTATTATGTTTGGAGGCTCTATTCTTTTGCTCAGGGTGATACTCTTCAAAGGTGGCGAACTGAGCCTTTT ATCATGATAACTGGTAGTGGAAGATGGGTACCACCATCTCTGCCCACAGCAAAGAGTCCAGAGCACGAGAAGGAGTCTGGTAGCACACATGCTGCTGGAA GAAGCAGGCGTGTTGACCCTGAAAGAACACTGACTGATCCACAAAGGGATGAGTTTGAGGATATGTTGCGTGCTTTAACATTGGAAAGAAGTCAAATAAA GGATGCTATGGGTTTTGCCCTGGATAATGTTGATGCTGCAGGGGAGGTAGTTGAAGTTCTGACAGAATCTTTGACACTTAAAGAAACTCCTATTCCAACA AAAGTAGCAAGACTCATGCTTGTCTCTGATATCCTTCATAATAGTAGTGCTCCTGTAAAAAATGCATCTGCTTATCGAACTAAATTTGAAGCTGCTCTGC CTGACATAATGGAGAGCTTTAATGACTTGTATCGTAGTATAACTGGAAGGATCACTGCTGAGGCCCTTAAGGAACGAGTTCTGAAAGTGTTGCAAGTATG GTCGGATTGGTTTCTGTTTTCAGATGCTTATGTGAATGGACTACGTGCTACTTTTCTTCGTTCTAGTAACTCTGGTGTGATCCCGTTTCATTCTATGTGC GGTGATGCACCTGAAATTGAGAAAAAGAATAGCACAGAAGACACAGTTGATGGGGGAAAGACCAATCAAGATGCTGCATTGGCAATGGGCAAAGGAGCTG CTACGAAGGAGCTAATGGATCTTCCCCTTGCTGAGTTGGAAAGACGTTGCAGACATAATGGATTGTCGCTCGTTGGTGGTAGAGAAACGATGGTGGCACG ATTGCTGAACCTGGAAGAGGCAGAAAAACAAAGGGGGTATGAATTAGATGGTGACTTGAAAATTGCTCAGAGCAATTCAAGTTCCAGTAGATATTCAAGT GTTCACAGAGAAGTGAATGTTGATCCAGGGCCAGTGGGATTGACAGGGTGGAACATTTATGGAGAGGATGATACGCCATCCCAGAATAAAAGGTCTGTCT CTTTGGTTTCAACCCTCCCAATTCCACAACCTGAACTAAAAGCCTTTGCAAAGAAAGAGAAGAATGATCCTGTTCTGCCAGCATCTAAATGGGCTAGAGA TGATGATGAAAGTGATGATGAACAAAAGAGAAGTGTTAGGGACCTTGGGTTAAGCTACTCATCTTCTGGAAGTGAAAATGCTGGTGATGGTCAAGGTAAG GAAGATGAAATGGAATTTGCTACTGACGCAAGCATTCCAACGCAACCTGAGAGTGGAATGAATGAAGAGCAGAGACAAAAGTTGAGACGTTTGGAAGTTG CTTTAATAGAGTATCGTGAATCCCTCGAGGAGCAAGGAATGAAAAATTCAGAGGAATTTGAGAGGAAAGTTGCAGTACATCGGAAACGGCTAGAGTCTGA ATATGGCCTATCAAGTTCAAATGAAGATGTCACTGGCAACAAGAGAATATCTTCTGAAAGGAGGGATAGACGTGATGATAATCATGAATCCTCAAGAAAG CGACACCGCAGTGAAAGCAGAAGCGAAAGCCCACTAAGAAAACTATCACTTAGGGACAGAGAGAGGGGACATGACTCAGACAAGGACCGGGAAAGGCATA GGGAAAGAGATAGGGGAAATAATTTGGAAAGTGAAAGACGGGACCGCGATTACCGAGAAAAGAGTGGAAGCAAAGAGCGGGATGATCATGACAGAGACAG AGGCAGAGACAGGGATAGGAGGAGACGTGTAAAATGA
AA sequence Show only first row Show all	>Potri.006G265700.3 pacid=42768614 polypeptide=Potri.006G265700.3.p locus=Potri.006G265700 ID=Potri.006G265700.3.v4.1 annot-version=v4.1 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNEKLKSDAEGEKSKDGVSVPKKGSRYVPSFIPPPMAPKG KEPERKREEERPKEKEKGKTRNIDHFMEELKHEHEMRERRNQEREHWREGRHTESSAPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDE NFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVIVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKEGATVILSGPS GPPVTSVPNQNSELVLTPNVPDIMVAPPEDDHLRHVIDTMALYVLDGGCAFEQAIMQRGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPF IMITGSGRWVPPSLPTAKSPEHEKESGSTHAAGRSRRVDPERTLTDPQRDEFEDMLRALTLERSQIKDAMGFALDNVDAAGEVVEVLTESLTLKETPIPT KVARLMLVSDILHNSSAPVKNASAYRTKFEAALPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRSSNSGVIPFHSMC GDAPEIEKKNSTEDTVDGGKTNQDAALAMGKGAATKELMDLPLAELERRCRHNGLSLVGGRETMVARLLNLEEAEKQRGYELDGDLKIAQSNSSSSRYSS VHREVNVDPGPVGLTGWNIYGEDDTPSQNKRSVSLVSTLPIPQPELKAFAKKEKNDPVLPASKWARDDDESDDEQKRSVRDLGLSYSSSGSENAGDGQGK EDEMEFATDASIPTQPESGMNEEQRQKLRRLEVALIEYRESLEEQGMKNSEEFERKVAVHRKRLESEYGLSSSNEDVTGNKRISSERRDRRDDNHESSRK RHRSESRSESPLRKLSLRDRERGHDSDKDRERHRERDRGNNLESERRDRDYREKSGSKERDDHDRDRGRDRDRRRRVK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25060			RNA recognition motif (RRM)-co...		Potri.006G265700 [exp]	0	1
AT4G24680		MOS1	modifier of snc1 (.1)		Potri.015G079800 [exp]	3.00	0.8759
AT5G58340	MYB		myb-like HTH transcriptional r...		Potri.013G154500 [exp]	6.32	0.7981
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Potri.017G047600 [exp]	8.12	0.8635
AT1G32490		EMB2733, ESP3	ENHANCED SILENCING PHENOTYPE 3...		Potri.015G008700 [exp]	9.00	0.8468
AT2G40650			PRP38 family protein (.1)		Potri.005G021600 [exp]	9.53	0.8201
AT1G20300			Pentatricopeptide repeat (PPR)...		Potri.005G066700 [exp]	9.74	0.8384
AT2G39260			binding;RNA binding (.1)		Potri.010G216100 [exp]	10.48	0.8236
AT5G12100			pentatricopeptide (PPR) repeat...		Potri.010G249800 [exp]	10.95	0.7316
AT5G08630			DDT domain-containing protein ...		Potri.004G138900 [exp]	13.22	0.7824
AT5G40340			Tudor/PWWP/MBT superfamily pro...		Potri.004G130600 [exp]	13.26	0.8410

Compare expression of checked genes

Potri.006G265700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.