Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24960 761 / 0 unknown protein AT4G02210 281 / 8e-87 unknown protein AT5G05800 118 / 4e-28 unknown protein AT3G11290 93 / 1e-19 unknown protein AT4G02550 81 / 3e-16 unknown protein AT3G11310 75 / 7e-14 unknown protein AT2G19220 73 / 3e-13 unknown protein AT1G30140 59 / 1e-09 unknown protein AT5G27260 58 / 9e-09 unknown protein AT2G29880 52 / 8e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G025200 [exp] 597 / 0 AT2G24960 514 / 2e-168 unknown protein Potri.002G200600 [exp] 271 / 4e-82 AT4G02210 471 / 1e-163 unknown protein Potri.004G172900 [exp] 97 / 9e-22 AT2G24960 96 / 1e-21 unknown protein Potri.002G023800 [exp] 90 / 2e-19 AT2G24960 89 / 2e-19 unknown protein Potri.003G190900 [exp] 86 / 3e-18 AT4G02550 407 / 8e-144 unknown protein Potri.011G163248 [exp] 84 / 2e-17 AT4G02550 93 / 4e-22 unknown protein Potri.010G215600 [exp] 81 / 1e-16 AT4G02550 77 / 7e-16 unknown protein Potri.006G191850 [exp] 74 / 2e-15 AT4G02550 71 / 2e-15 unknown protein Potri.011G088750 [exp] 76 / 4e-15 AT4G02550 79 / 3e-17 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026250 [exp] 853 / 0 AT2G24960 750 / 0.0 unknown protein Lus10013421 [exp] 236 / 3e-70 AT4G02210 418 / 1e-144 unknown protein Lus10010304 [exp] 229 / 1e-67 AT4G02210 395 / 1e-135 unknown protein Lus10042421 [exp] 112 / 3e-29 AT2G24960 92 / 1e-22 unknown protein Lus10025958 [exp] 99 / 3e-22 AT2G24960 102 / 4e-24 unknown protein Lus10014257 [exp] 98 / 7e-21 AT3G14820 282 / 1e-89 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002039 [exp] 78 / 2e-15 AT3G11290 91 / 2e-20 unknown protein Lus10024329 [exp] 67 / 1e-11 AT5G05800 81 / 7e-17 unknown protein Lus10016838 [exp] 64 / 3e-11 AT2G24960 71 / 4e-14 unknown protein Lus10023062 [exp] 61 / 9e-10 AT4G02210 67 / 4e-12 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF12776 [poplar] [flax] Myb_DNA-bind_3 Myb/SANT-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G265900.5 pacid=42767947 polypeptide=Potri.006G265900.5.p locus=Potri.006G265900 ID=Potri.006G265900.5.v4.1 annot-version=v4.1 ATGGGCACGCAAATACCAACAAGTAATGATCGTTCAAGAACATATTGGACACCAACAATGGAGCGGTATTTTATTGATCTTATGTTAGAGCAGTTGCATA GAGGGAATAGGATAGGCCATACATTCAACAAGCAGGCATGGACAGACATGCTGGCTGTGTTCAATGCAAAATTCGAGTCTCAGTATGACAAAGATGTGTT GAAAAGTCGTTATACGAATTTATGGAAGCAGTTCAATGATGTAAAGGAGCTTCTTGGCCAGACTGGGTTCGCTTGGGATGAAAATCGAAAAATGGTGGTG GCTGATGATGGTCTCTGGCATGATTACATCAAGGTTCATCCAGATGCTCGATCCTACAAGACTAAAGCAGTGTTGAATTTTAATGATTTGTGTGTCATAT ATGGATATACCAGTGCAGATGGAAGATACAGTCGATCGAGTCATGATTTTGATTTTGATGATGAAGTCCAAGGGGTAAACATGGGTGATCCAACGAGTAG CTTGTCATCAAATAGTGAGCGTCCAAGGACAGAGTGGACAGCTGCTATGGACCAATATTTTGTTGAGCTTATGCTGGACCAAATGGGAAGAGGCAACAAG ACTGATAATACATTCGTCAAACAAGCATGGACAGATATGCTTTCCTCATTCAACGCAAAGTTCGGTCCTCGCCATGACAAAAGGATTCTAAGACATCGAT ACAAGAAGTTAGCTAAGTACTATAGTGATCTGAAGGTTATTCTGCAACAAAATGGCTTTTCTTGGGATGAAACACAACAGATGATTGTTGCTGATGATGA TAAAGTTTGGGATGCTTATATCAAGGCACATCCACATGCACGGACATATAGAATGAAGACGTTGCCAAATTACAATGATTTGGTCCTTATATATGGGAAT GCAAGTGAAAATGGTGTTCAAAGTAACTTCCTTGAGGACAAAGACCACGAAGCTGACATTTCCAGAAAGAAGGCTGAAGAAGGAAAGGGGAGCCAATCCC TTGGCAGTAGTGATCGTACAAGAACGTATTGGACACCGCCAATGGATCGCTATCTTATTGATTTATTACTGGACCAAGTGCATAGAGGAAATAAATTTGG ACAGACATTTATAAGCCAGGCTTGGATTGACATGGCTGCATTGTTCAATGTCAAATTTCAGTCGCACCATGACAAAGATGTTTTAAAAAACCGGTACAAG CATTTAAGGCGTCTGTACAATGAGATAAAAAATCTTCTTGAAAATAGTGGGTTTTCATGGGACGAAACACGAGAAATGATAACAGCTAAAGATCATATTT GGGATGCTTATATCAAGGCACACCCTGATGCTCGATCATACAGAGTTAAAACTGTGCCGGGTTATCAGAAATTGTGTGTTATAGTTGGACAAGAAAATTC TGGTGGAAGATACAGCCGTTTGGCTCAAAGCATAGATGCCAATGAGGAAATGCCGGTTTTGATGACTGTTGACCCTCTGACAGTAGATTGGCAGCCAGAG ATGAACCGCTATTTTGTTGACCTTATGTTAGAGCAGGTGCATGGAGGGAACAAGATCGATCATACATTCAATGAACAAGCATGGGCTCACATGGTTAAAT TATTTAATGACAAATTTGGACTTACATGTGATAAATACAGTTTAGAGAAGCAGTATGTCAGTTTGATGAAAGATTGTAACGAGATTAGCAGTCTTCTCAG TCATAGGGGGTTTGCATGGGATGGAACTCAGCAAATGGTTGCTGCTGATGACGCTACTTGGGAAGATCATGTTAAGCATGGAATTTTGCAGGGACATCCG GAAGCCATAGCTTACAAAAACAAAGTACTAGACAGTTATCTTGATTTGTGCTTCATCCAAAGAAATGAAGTATCAGATACAAGACTTGGCGATCCAGGTC CACCAATGCAAAATGAAGAAACTGCCATGAAAGTAGAAATAGTGATGGATGGACTGCAGGGGAATGAGCAATTTCCAGTTGAGGACATTGAAATATCTGA TGCACAGAAAAAGCGGCCTGCTACAGTTGCTGAACTTTCTTGCAAGGCGCAGAAAATTGGCAAGGAGATGCGATGTGTAGTTTCAGCATTTGCAAACAAG AAAGAGAGCAAGAACCACATGTCAATAGAAAGTGCAATAGAGACCCTTCAAACTATTCCTGACATAGATGATGAGCTTTTGCTGGATGCTTGTGATCTTC TGGAAGATGAGAGGAAGGCAAAGACATTTTTGGCATTGGATGCAACACTGCGAAAGAAATGGTTATTAAGAAAACTGCGTCCGAAGGAGTCTCAATAG
AA sequence Show only first row Show all	>Potri.006G265900.5 pacid=42767947 polypeptide=Potri.006G265900.5.p locus=Potri.006G265900 ID=Potri.006G265900.5.v4.1 annot-version=v4.1 MGTQIPTSNDRSRTYWTPTMERYFIDLMLEQLHRGNRIGHTFNKQAWTDMLAVFNAKFESQYDKDVLKSRYTNLWKQFNDVKELLGQTGFAWDENRKMVV ADDGLWHDYIKVHPDARSYKTKAVLNFNDLCVIYGYTSADGRYSRSSHDFDFDDEVQGVNMGDPTSSLSSNSERPRTEWTAAMDQYFVELMLDQMGRGNK TDNTFVKQAWTDMLSSFNAKFGPRHDKRILRHRYKKLAKYYSDLKVILQQNGFSWDETQQMIVADDDKVWDAYIKAHPHARTYRMKTLPNYNDLVLIYGN ASENGVQSNFLEDKDHEADISRKKAEEGKGSQSLGSSDRTRTYWTPPMDRYLIDLLLDQVHRGNKFGQTFISQAWIDMAALFNVKFQSHHDKDVLKNRYK HLRRLYNEIKNLLENSGFSWDETREMITAKDHIWDAYIKAHPDARSYRVKTVPGYQKLCVIVGQENSGGRYSRLAQSIDANEEMPVLMTVDPLTVDWQPE MNRYFVDLMLEQVHGGNKIDHTFNEQAWAHMVKLFNDKFGLTCDKYSLEKQYVSLMKDCNEISSLLSHRGFAWDGTQQMVAADDATWEDHVKHGILQGHP EAIAYKNKVLDSYLDLCFIQRNEVSDTRLGDPGPPMQNEETAMKVEIVMDGLQGNEQFPVEDIEISDAQKKRPATVAELSCKAQKIGKEMRCVVSAFANK KESKNHMSIESAIETLQTIPDIDDELLLDACDLLEDERKAKTFLALDATLRKKWLLRKLRPKESQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24960			unknown protein		Potri.006G265900 [exp]	0	1
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.010G056900 [exp]	4.24	0.8687
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Potri.002G139500 [exp]	7.54	0.8566
AT2G02148			unknown protein		Potri.008G143700 [exp]	9.16	0.8086
AT1G21700		CHB4, ATSWI3C	SWITCH/sucrose nonfermenting 3...		Potri.005G180800 [exp]	9.48	0.8644	CHB904,CHB4.1
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Potri.017G047600 [exp]	12.48	0.8557
AT5G53150			DNAJ heat shock N-terminal dom...		Potri.003G171200 [exp]	14.28	0.8432
AT1G77180		SKIP	chromatin protein family (.1.2...		Potri.006G163700 [exp]	15.19	0.8486
AT5G16680			RING/FYVE/PHD zinc finger supe...		Potri.019G041900 [exp]	15.29	0.8448
AT3G13460		ECT2	evolutionarily conserved C-ter...		Potri.003G222700 [exp]	16.52	0.8309
AT5G14610			DEAD box RNA helicase family p...		Potri.001G347100 [exp]	17.29	0.8305

Compare expression of checked genes

Potri.006G265900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.